Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 1.4e-182 642.9 330 100.0
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 1.6e-138 496.5 287 90.2
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 1.2e-125 453.8 283 81.6
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 7.6e-125 451.1 290 81.0
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 1.7e-124 449.9 291 81.8
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 1.5e-120 436.8 331 73.1
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 1.4e-118 430.3 287 78.4
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 9.9e-117 424.1 238 91.2
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 2.7e-114 416.0 288 74.0
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 3.6e-111 405.6 283 73.5
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 1.4e-110 403.7 300 69.7
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 4.0e-110 402.1 288 71.9
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 1.5e-109 400.2 287 71.4
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 1.7e-108 396.7 298 69.5
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 3.2e-107 392.5 296 68.6
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 3.2e-107 392.5 285 70.2
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 4.2e-107 392.1 277 72.2
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 4.2e-107 392.1 275 72.4
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 5.4e-107 391.7 269 73.6
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 3.5e-106 389.0 291 67.0
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 3.9e-105 385.6 292 68.5
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 6.7e-105 384.8 274 69.7
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 8.7e-105 384.4 273 71.8
arahy.Tifrunner.gnm1.ann1.ESII2D Arachis hypogaea HOM05D001568 ORTHO05D008804 1.5e-104 383.6 230 83.9
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 1.9e-104 383.3 287 69.3
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 3.3e-104 382.5 289 68.5
arahy.Tifrunner.gnm1.ann1.804FU2 Arachis hypogaea HOM05D001568 ORTHO05D008804 4.3e-104 382.1 230 83.5
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 2.1e-103 379.8 276 69.6
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 2.8e-103 379.4 289 67.8
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 8.1e-103 377.9 280 68.9
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 1.1e-102 377.5 278 70.9
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 1.1e-102 377.5 301 65.4
Cfa004706 Carpinus fangiana HOM05D001568 ORTHO05D008804 1.4e-102 377.1 294 67.7
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 4.0e-102 375.6 272 69.9
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 2.6e-101 372.9 293 66.6
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 4.5e-101 372.1 285 66.7
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 4.5e-101 372.1 253 73.1
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 1.0e-100 370.9 289 67.1
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 2.2e-100 369.8 283 67.1
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 2.2e-100 369.8 272 68.8
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 2.9e-100 369.4 263 70.0
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 4.9e-100 368.6 272 69.5
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 1.4e-99 367.1 274 69.0
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 2.5e-99 366.3 321 60.4
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 3.2e-99 365.9 290 65.9
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 2.7e-98 362.8 287 66.6
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 3.5e-98 362.5 271 68.3
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 1.0e-97 360.9 275 68.0
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 1.0e-97 360.9 274 66.4
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 1.0e-97 360.9 274 66.4
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 3.9e-97 359.0 296 63.5
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 6.7e-97 358.2 276 66.3
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 2.5e-96 356.3 260 69.6
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 1.3e-95 354.0 279 65.6
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 1.6e-95 353.6 281 64.4
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 6.2e-95 351.7 248 70.2
CDE04G1257 Ceratophyllum demersum HOM05D001568 ORTHO05D008804 1.1e-94 350.9 255 68.2
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 1.1e-94 350.9 254 70.1
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 1.4e-94 350.5 285 63.5
Cfa004705 Carpinus fangiana HOM05D001568 ORTHO05D008804 2.4e-94 349.7 264 68.6
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 5.3e-94 348.6 284 64.1
Aqoxy1G00265 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 6.9e-94 348.2 274 65.0
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 6.9e-94 348.2 264 66.7
MD10G1109100 Malus domestica HOM05D001568 ORTHO05D008804 1.2e-93 347.4 230 73.5
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 2.0e-93 346.7 282 64.9
Lj9A337T44 Lonicera japonica HOM05D001568 ORTHO05D008804 2.0e-93 346.7 231 73.2
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 2.6e-93 346.3 228 75.4
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 3.4e-93 345.9 288 61.8
DCAR_001738 Daucus carota HOM05D001568 ORTHO05D008804 5.8e-93 345.1 280 62.5
FAN15G2988 Fragaria x ananassa HOM05D001568 ORTHO05D008804 2.9e-92 342.8 331 58.0
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 5.0e-92 342.0 285 63.9
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 5.0e-92 342.0 285 63.9
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 1.4e-91 340.5 285 63.9
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 1.9e-91 340.1 276 61.6
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 2.5e-91 339.7 301 58.8
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 1.2e-90 337.4 264 65.2
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 1.0e-89 334.3 291 61.9
ClCG02G007120 Citrullus lanatus HOM05D001568 ORTHO05D008804 1.5e-88 330.5 284 60.9
MBI16_g16470_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D008804 7.4e-88 328.2 228 72.4
Thhalv10011739m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 6.3e-87 325.1 230 70.0
Peaxi162Scf00016g03020 Petunia axillaris HOM05D001568 ORTHO05D008804 7.7e-85 318.2 254 64.6
Os03g0729700 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D008804 1.4e-83 313.9 266 60.2
Psat6g214440 Pisum sativum HOM05D001568 ORTHO05D008804 9.4e-83 311.2 205 77.6
HPP92_026588 Vanilla planifolia HOM05D001568 ORTHO05D008804 1.8e-81 307.0 254 59.1
CARHR040100 Cardamine hirsuta HOM05D001568 ORTHO05D008804 3.3e-80 302.8 217 71.0
Hma1.2p1_0661F.1_g198116 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 2.8e-79 299.7 203 74.9
Aa31LG10G4130 Aethionema arabicum HOM05D001568 ORTHO05D008804 2.0e-77 293.5 205 73.2
AUR62027019 Chenopodium quinoa HOM05D001568 ORTHO05D008804 3.4e-77 292.7 217 68.7
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 7.9e-74 281.6 264 59.5
AUR62030859 Chenopodium quinoa HOM05D001568 ORTHO05D008804 4.4e-72 275.8 205 68.3
PGR142G1084 Punica granatum HOM05D001568 ORTHO05D008804 1.1e-70 271.2 203 68.5
AagrBONN_evm.TU.Sc2ySwM_362.475 Anthoceros agrestis HOM05D001568 ORTHO05D008804 1.8e-70 270.4 268 52.6
Sabra16G0181700 Salix brachista HOM05D001568 ORTHO05D008804 1.5e-67 260.8 213 66.2
Ah.01g007040 Amaranthus hybridus HOM05D001568 ORTHO05D008804 2.7e-66 256.5 183 67.8
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 1.1e-64 251.1 288 48.6
Mapoly0081s0053 Marchantia polymorpha HOM05D001568 ORTHO05D008804 1.5e-64 250.8 282 47.5
Pp3c3_17050 Physcomitrium patens HOM05D001568 ORTHO05D008804 2.8e-63 246.5 249 50.2
SMO358G0428 Selaginella moellendorffii HOM05D001568 ORTHO05D008804 1.0e-60 238.0 245 49.4
THA.LOC104809178 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 2.9e-60 236.5 165 73.3
FAN24G1144 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.6e-58 230.7 211 59.7
CBR_g48696 Chara braunii HOM05D001568 ORTHO05D008804 9.1e-54 214.9 249 44.6
TAR376G0809 Trochodendron aralioides HOM05D001568 ORTHO05D008804 6.8e-49 198.7 278 47.5
Manes.10G086502 Manihot esculenta HOM05D001568 ORTHO05D008804 5.7e-48 195.7 275 42.5
Aqoxy335s004 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 8.6e-44 181.8 134 66.4
FAN24G0164 Fragaria x ananassa HOM05D001568 ORTHO05D008804 4.0e-33 146.4 111 66.7
MCO02G312 Micromonas commoda HOM05D001568 ORTHO05D008804 3.5e-29 133.3 194 39.2
Thhalv10012254m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 9.5e-27 125.2 99 65.7
MSTRG.20236 Avicennia marina HOM05D001568 ORTHO05D008804 1.6e-26 124.4 104 61.5
PRCOL_00000434 Prasinoderma coloniale HOM05D001568 ORTHO05D008804 6.6e-20 102.4 304 28.9
Cre03.g175800 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D008804 4.3e-19 99.8 340 27.6
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 8.9e-17 92.0 103 54.4
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 2.0e-16 90.9 102 53.9
Ah.01g007020 Amaranthus hybridus HOM05D001568 ORTHO05D008804 5.1e-12 76.3 49 73.5
RcHm_v2.0_Chr6g0248571 Rosa chinensis HOM05D001568 ORTHO05D008804 4.3e-11 73.2 103 46.6
Ca_28940_v3 Cicer arietinum L. HOM05D001568 ORTHO05D148655 9.6e-11 72.0 270 23.7
Haze_10306 Corylus avellana HOM05D000031 ORTHO05D001033 1.5e-08 64.7 57 61.4
C05p34140 Brassica napus HOM05D001568 ORTHO05D019891 4.4e-08 63.2 50 58.0
BcaC05g27454 Brassica carinata HOM05D001568 ORTHO05D019891 7.6e-08 62.4 50 56.0
BcaC05g27456 Brassica carinata HOM05D001568 ORTHO05D019891 7.6e-08 62.4 50 56.0
BolC5t32148H Brassica oleracea HOM05D058656 ORTHO05D019891 7.6e-08 62.4 50 56.0
Actinidia27998 Actinidia chinensis HOM05D001568 ORTHO05D008804 7.1e-06 55.8 30 80.0


User provided reference genes

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