Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 0.0e+00 1240.3 799 100.0
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 5.3e-273 944.5 803 78.1
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 2.8e-242 842.4 772 72.4
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 6.1e-229 798.1 818 65.6
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 3.2e-222 775.8 787 68.0
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.9e-206 723.4 808 65.6
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 3.6e-205 719.2 803 59.7
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 2.9e-202 709.5 809 65.4
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 1.1e-180 637.9 920 47.4
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 4.4e-179 632.5 914 52.8
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 2.3e-175 620.2 809 60.8
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 2.0e-171 607.1 841 52.0
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 6.4e-170 602.1 789 56.4
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 7.9e-168 595.1 787 57.1
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 3.9e-159 566.2 864 49.8
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 7.1e-153 545.4 854 45.2
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 5.9e-147 525.8 836 48.9
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 5.0e-146 522.7 450 67.6
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 1.2e-144 518.1 836 44.6
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 2.7e-144 516.9 806 49.5
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 1.5e-139 501.1 890 46.7
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 1.3e-138 498.0 868 45.4
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 1.1e-137 495.0 786 48.6
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 1.4e-137 494.6 901 44.1
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 1.0e-135 488.4 855 45.7
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 2.8e-133 480.3 852 44.7
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 2.0e-131 474.2 884 43.6
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 4.5e-131 473.0 880 49.0
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 7.7e-131 472.2 889 42.6
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 1.0e-130 471.9 881 43.5
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 1.9e-129 467.6 836 46.2
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 3.2e-129 466.8 892 48.3
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 1.8e-127 461.1 881 43.0
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 1.5e-126 458.0 880 48.9
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 1.5e-126 458.0 802 45.6
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 3.3e-126 456.8 778 44.5
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 2.2e-125 454.1 880 48.8
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 2.8e-125 453.8 445 62.0
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 7.0e-124 449.1 873 41.6
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 2.1e-120 437.6 690 49.3
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 1.0e-119 435.3 443 60.5
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 1.0e-119 435.3 815 41.8
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.5e-118 431.4 798 42.6
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 5.7e-118 429.5 784 42.3
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 6.3e-117 426.0 751 50.6
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 7.7e-115 419.1 971 40.2
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 1.9e-113 414.5 667 51.9
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 5.5e-113 412.9 438 57.5
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 4.7e-112 409.8 406 60.6
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 8.0e-112 409.1 837 42.3
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 1.3e-109 401.7 948 37.7
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 2.8e-109 400.6 447 53.5
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 7.0e-108 396.0 773 38.8
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 1.2e-107 395.2 419 56.3
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 1.6e-107 394.8 799 37.7
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 2.0e-107 394.4 670 44.0
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 6.5e-106 389.4 860 46.6
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 8.5e-106 389.0 447 53.0
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 1.6e-104 384.8 432 53.5
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 2.8e-104 384.0 421 54.4
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 2.8e-104 384.0 441 52.6
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 2.0e-102 377.9 883 42.5
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 3.7e-101 373.6 449 52.3
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 8.3e-101 372.5 801 40.8
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 1.1e-100 372.1 451 52.5
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 9.2e-100 369.0 414 56.5
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 1.6e-99 368.2 884 44.5
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 1.6e-99 368.2 437 53.5
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 2.0e-99 367.9 723 45.0
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 7.8e-99 365.9 431 54.3
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 1.0e-98 365.5 399 53.6
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 1.7e-98 364.8 435 53.6
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 3.8e-98 363.6 840 44.8
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 1.1e-97 362.1 734 40.2
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 3.3e-97 360.5 442 53.6
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 2.1e-96 357.8 730 40.7
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 5.2e-95 353.2 872 39.4
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 2.0e-94 351.3 445 51.5
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 4.4e-94 350.1 878 39.6
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 4.4e-94 350.1 816 41.2
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 4.4e-94 350.1 781 37.0
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 1.7e-93 348.2 872 39.2
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 4.1e-92 343.6 395 52.7
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 4.6e-91 340.1 400 50.8
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 5.9e-91 339.7 351 58.7
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 2.5e-89 334.3 873 38.4
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 4.3e-89 333.6 750 38.7
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 4.7e-88 330.1 873 38.5
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 6.2e-88 329.7 803 41.6
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 1.6e-83 315.1 443 46.5
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 1.6e-83 315.1 417 51.1
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 2.5e-81 307.8 850 38.2
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 5.6e-81 306.6 771 38.0
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 1.8e-79 301.6 441 45.6
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 1.2e-75 288.9 413 48.7
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 7.1e-52 209.9 394 38.1
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 7.1e-52 209.9 394 38.1
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 3.3e-49 201.1 641 39.9
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 4.5e-46 190.7 352 41.5
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.5e-38 165.6 884 29.3
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 4.9e-37 160.6 141 61.7
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 1.4e-36 159.1 289 40.5
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 2.2e-32 145.2 343 35.9
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 3.3e-25 121.3 221 43.4
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 5.7e-25 120.6 132 50.8
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 2.8e-24 118.2 585 40.3
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 4.8e-24 117.5 93 64.5
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 1.8e-23 115.5 92 69.6
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 3.4e-22 111.3 229 36.2
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 1.0e-21 109.8 147 53.1
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 1.9e-20 105.5 138 51.4
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 2.4e-15 88.6 93 53.8
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 1.3e-13 82.8 197 41.6
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.1e-12 79.7 144 43.1
Glyma.10G258901 Glycine max HOM05D006481 ORTHO05D008160 1.6e-11 75.9 71 60.6
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.7e-11 75.1 354 34.2
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 3.3e-09 68.2 128 41.4
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.1e-07 63.2 47 72.3
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 3.1e-07 61.6 412 27.7
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 5.3e-07 60.8 47 63.8


User provided reference genes

Program Settings