Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G129600 Glycine max HOM05D000049 ORTHO05D008785 7.7e-74 280.4 143 100.0
Glyma.20G127500 Glycine max HOM05D000049 ORTHO05D008785 4.1e-67 258.1 143 91.6
Glyma.10G263000 Glycine max HOM05D000049 ORTHO05D008785 2.4e-59 232.3 143 82.5
Phvul.007G038900 Phaseolus vulgaris HOM05D000049 ORTHO05D008785 5.5e-56 221.1 143 78.3
VMungo0720G1000 Vigna mungo HOM05D000049 ORTHO05D008785 3.0e-54 215.3 143 78.3
Lalb_Chr02g0145351 Lupinus albus HOM05D000049 ORTHO05D008785 2.7e-47 192.2 143 67.8
Lj5g0006015 Lotus japonicus HOM05D000049 ORTHO05D008785 6.8e-46 187.6 144 70.8
Psat6g219680 Pisum sativum HOM05D000049 ORTHO05D008785 6.3e-44 181.0 146 66.4
Thecc.02G106900 Theobroma cacao HOM05D000049 ORTHO05D008785 5.4e-43 177.9 144 68.1
TPR.G13867 Trifolium pratense HOM05D000049 ORTHO05D008785 5.0e-41 171.4 145 63.4
Duzib248G1051 Durio zibethinus HOM05D000049 ORTHO05D008785 8.6e-41 170.6 144 66.0
Duzib132G0396 Durio zibethinus HOM05D000049 ORTHO05D008785 4.2e-40 168.3 142 64.8
Atru.chr5.2581 Acer truncatum HOM05D000049 ORTHO05D008785 5.2e-38 161.4 144 63.2
Hund06332 Selenicereus undatus HOM05D000049 ORTHO05D008785 4.4e-37 158.3 144 63.2
Cpa.g.sc106.84 Carica papaya HOM05D000049 ORTHO05D008785 1.7e-36 156.4 146 62.3
Gohir.D02G207500 Gossypium hirsutum HOM05D000049 ORTHO05D008785 1.7e-36 156.4 146 62.3
Manes.02G137400 Manihot esculenta HOM05D000049 ORTHO05D008785 2.2e-36 156.0 144 60.4
Medtr1g107490 Medicago truncatula HOM05D000049 ORTHO05D008785 2.2e-36 156.0 132 64.4
Gorai.005G235400 Gossypium raimondii HOM05D000049 ORTHO05D008785 2.8e-36 155.6 146 62.3
Gohir.A03G186700 Gossypium hirsutum HOM05D000049 ORTHO05D008785 6.3e-36 154.5 146 61.6
MD05G1088100 Malus domestica HOM05D000049 ORTHO05D008785 1.8e-35 152.9 148 60.1
Prupe.8G134100 Prunus persica HOM05D000049 ORTHO05D008785 1.8e-35 152.9 144 61.1
Aqoxy5G01153 Aquilegia oxysepala HOM05D000049 ORTHO05D008785 3.1e-35 152.1 103 77.7
Ciclev10029534m.g Citrus clementina HOM05D000049 ORTHO05D008785 3.1e-35 152.1 143 60.8
CANSAT25G0973 Cannabis sativa HOM05D000049 ORTHO05D008785 4.1e-35 151.8 145 62.1
arahy.Tifrunner.gnm1.ann1.KJA62A Arachis hypogaea HOM05D000049 ORTHO05D008785 5.4e-35 151.4 161 56.5
CsaV3_7G008250 Cucumis sativus L. HOM05D000049 ORTHO05D008785 5.4e-35 151.4 145 62.1
GSVIVG01003167001 Vitis vinifera HOM05D000049 ORTHO05D008785 5.4e-35 151.4 128 66.4
Atru.chr11.1081 Acer truncatum HOM05D000049 ORTHO05D008785 7.0e-35 151.0 142 59.9
EL10Ac9g22295 Beta vulgaris HOM05D000049 ORTHO05D008785 7.0e-35 151.0 144 59.0
CANSAT25G0620 Cannabis sativa HOM05D000049 ORTHO05D008785 2.0e-34 149.4 143 61.5
Ah.01g018130 Amaranthus hybridus HOM05D000049 ORTHO05D008785 2.7e-34 149.1 145 63.4
Nn1g04714 Nelumbo nucifera HOM05D000049 ORTHO05D008785 3.5e-34 148.7 113 71.7
Cfa004569 Carpinus fangiana HOM05D000049 ORTHO05D008785 5.9e-34 147.9 147 63.3
Hma1.2p1_0796F.1_g219130 Hydrangea macrophylla HOM05D000049 ORTHO05D008785 5.9e-34 147.9 137 62.8
QL11p033983 Quercus lobata HOM05D000049 ORTHO05D008785 5.9e-34 147.9 143 60.8
ClCG02G006290 Citrullus lanatus HOM05D000049 ORTHO05D008785 1.3e-33 146.7 146 62.3
AUR62039109 Chenopodium quinoa HOM05D000049 ORTHO05D008785 1.7e-33 146.4 144 57.6
Cc02_g19180 Coffea canephora HOM05D000049 ORTHO05D008785 1.7e-33 146.4 144 59.0
Dinv42184 Davidia involucrata HOM05D000049 ORTHO05D008785 2.3e-33 146.0 135 60.7
Sabra16G0189300 Salix brachista HOM05D000049 ORTHO05D008785 2.9e-33 145.6 149 57.0
AUR62010281 Chenopodium quinoa HOM05D000049 ORTHO05D008785 3.8e-33 145.2 144 56.2
Haze_10161 Corylus avellana HOM05D000049 ORTHO05D008785 3.8e-33 145.2 147 62.6
Oeu010393.1 Olea europaea HOM05D000049 ORTHO05D008785 6.6e-33 144.4 145 57.2
Potri.009G096800 Populus trichocarpa HOM05D000049 ORTHO05D008785 6.6e-33 144.4 144 55.6
TWI31G0015 Tripterygium wilfordii HOM05D000049 ORTHO05D008785 6.6e-33 144.4 144 59.0
Eucgr.H03224 Eucalyptus grandis HOM05D000049 ORTHO05D008785 8.6e-33 144.1 147 58.5
arahy.Tifrunner.gnm1.ann1.MU25MQ Arachis hypogaea HOM05D000049 ORTHO05D008785 1.5e-32 143.3 97 75.3
FvH4_2g05321 Fragaria vesca HOM05D000049 ORTHO05D008785 1.9e-32 142.9 143 58.0
Aa31LG2G16660 Aethionema arabicum HOM05D000049 ORTHO05D008785 2.5e-32 142.5 149 57.0
AT4G34190 Arabidopsis thaliana HOM05D000049 ORTHO05D008785 5.6e-32 141.4 147 58.5
Migut.N01171 Erythranthe guttata HOM05D000049 ORTHO05D008785 5.6e-32 141.4 137 62.0
Potri.001G301100 Populus trichocarpa HOM05D000049 ORTHO05D008785 7.3e-32 141.0 144 56.2
SGA_v2.0_scaffold393G50708 Striga asiatica HOM05D000049 ORTHO05D008785 7.3e-32 141.0 105 72.4
Sc08g0001450 Simmondsia chinensis HOM05D000049 ORTHO05D008785 9.5e-32 140.6 144 56.2
CiPaw.06G170000 Carya illinoinensis HOM05D000049 ORTHO05D008785 1.6e-31 139.8 142 59.9
FAN20G0640 Fragaria x ananassa HOM05D000049 ORTHO05D008785 1.6e-31 139.8 143 56.6
RcHm_v2.0_Chr6g0255531 Rosa chinensis HOM05D000049 ORTHO05D008785 1.6e-31 139.8 143 57.3
Thhalv10026482m.g Eutrema salsugineum HOM05D000049 ORTHO05D008785 2.1e-31 139.4 155 56.8
HanXRQChr03g0070281 Helianthus annuus HOM05D000049 ORTHO05D008785 3.6e-31 138.7 102 70.6
Sed0018040 Sechium edule HOM05D000049 ORTHO05D008785 3.6e-31 138.7 143 58.0
CiPaw.05G010600 Carya illinoinensis HOM05D000049 ORTHO05D008785 4.7e-31 138.3 94 74.5
AL7G17120 Arabidopsis lyrata HOM05D000049 ORTHO05D008785 6.1e-31 137.9 151 58.9
Oeu018599.1 Olea europaea HOM05D000049 ORTHO05D008785 6.1e-31 137.9 95 74.7
PGR042G1228 Punica granatum HOM05D000049 ORTHO05D008785 6.1e-31 137.9 147 57.8
SalBow3G3686 Salvia bowleyana HOM05D000049 ORTHO05D008785 6.1e-31 137.9 118 67.8
Carub.0007s0619 Capsella rubella HOM05D000049 ORTHO05D008785 8.0e-31 137.5 149 55.7
MSTRG.5347 Avicennia marina HOM05D000049 ORTHO05D008785 1.0e-30 137.1 103 68.0
A01p04250 Brassica napus HOM05D000049 ORTHO05D008785 1.0e-30 137.1 148 55.4
BraA01t00414Z Brassica rapa HOM05D000049 ORTHO05D008785 1.0e-30 137.1 148 55.4
ECA240G2980 Erigeron canadensis HOM05D000049 ORTHO05D000027 1.0e-30 137.1 138 55.8
TAR381G1170 Trochodendron aralioides HOM05D000049 ORTHO05D008785 1.0e-30 137.1 111 65.8
Actinidia27967 Actinidia chinensis HOM05D000049 ORTHO05D008785 1.4e-30 136.7 102 71.6
C01p04640 Brassica napus HOM05D000049 ORTHO05D008785 1.4e-30 136.7 148 55.4
BolC1t00447H Brassica oleracea HOM05D000049 ORTHO05D008785 1.4e-30 136.7 148 55.4
CSS0023695 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 1.8e-30 136.3 103 71.8
BcaNung03801 Brassica carinata HOM05D000049 ORTHO05D008785 2.3e-30 136.0 154 55.8
Solyc01g107660.3 Solanum lycopersicum HOM05D000049 ORTHO05D008785 2.3e-30 136.0 145 56.6
CAN.G1231.12 Capsicum annuum HOM05D000049 ORTHO05D008785 5.2e-30 134.8 145 55.9
PGSC0003DMG400025866 Solanum tuberosum HOM05D000049 ORTHO05D008785 5.2e-30 134.8 145 57.2
CARHR242610 Cardamine hirsuta HOM05D000049 ORTHO05D008785 6.8e-30 134.4 155 58.1
CDE02G2484 Ceratophyllum demersum HOM05D000049 ORTHO05D008785 6.8e-30 134.4 102 69.6
THA.LOC104819560 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 6.8e-30 134.4 152 56.6
Nitab4.5_0002815g0100 Nicotiana tabacum HOM05D000049 ORTHO05D008785 4.4e-29 131.7 145 56.6
Migut.B00381 Erythranthe guttata HOM05D000049 ORTHO05D008785 7.5e-29 131.0 158 47.5
Sp7g31960 Schrenkiella parvula HOM05D000049 ORTHO05D008785 1.7e-28 129.8 154 54.5
Peaxi162Scf00016g02238 Petunia axillaris HOM05D000049 ORTHO05D008785 2.9e-28 129.0 145 55.9
HPP92_004768 Vanilla planifolia HOM05D000049 ORTHO05D008785 2.9e-28 129.0 102 64.7
THA.LOC104807247 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 4.9e-28 128.3 108 63.9
PSO210G6109 Papaver somniferum HOM05D000049 ORTHO05D008785 3.2e-27 125.6 114 62.3
unitig_22.g6845 Utricularia gibba HOM05D000049 ORTHO05D008785 4.1e-27 125.2 112 61.6
Nitab4.5_0005392g0020 Nicotiana tabacum HOM05D000049 ORTHO05D008785 1.2e-26 123.6 82 79.3
FAN24G0707 Fragaria x ananassa HOM05D000049 ORTHO05D008785 3.5e-26 122.1 130 53.8
DCAR_030806 Daucus carota HOM05D000049 ORTHO05D008785 1.0e-25 120.6 75 74.7
PSO170G1282 Papaver somniferum HOM05D000049 ORTHO05D008785 3.0e-25 119.0 109 65.1
CSS0021501 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 3.9e-25 118.6 100 65.0
CSS0024818 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 5.0e-25 118.2 122 57.4
FAN15G1433 Fragaria x ananassa HOM05D000049 ORTHO05D008785 8.6e-25 117.5 130 51.5
MELO3C018482.2 Cucumis melo HOM05D000049 ORTHO05D000027 9.5e-24 114.0 91 69.2
SEGI_21574 Sequoiadendron giganteum HOM05D000049 ORTHO05D008785 8.9e-22 107.5 76 65.8
TAR376G0829 Trochodendron aralioides HOM05D000049 ORTHO05D008785 9.8e-21 104.0 72 73.6
Hund00143 Selenicereus undatus HOM05D000049 ORTHO05D008785 2.2e-20 102.8 73 71.2
Dinv15757 Davidia involucrata HOM05D000049 ORTHO05D008785 2.9e-20 102.4 116 49.1
vmacro19520 Vaccinium macrocarpon HOM05D000049 ORTHO05D008785 3.2e-19 99.0 113 49.6
Sabra09G0074400 Salix brachista HOM05D000049 ORTHO05D008785 1.2e-18 97.1 131 43.5
Zm00001eb048670 Zea mays HOM05D000049 ORTHO05D008785 4.6e-18 95.1 105 48.6
Mapoly0006s0145 Marchantia polymorpha HOM05D000049 ORTHO05D008785 3.3e-16 89.0 144 41.0
Pp3c1_21810 Physcomitrium patens HOM05D000049 ORTHO05D008785 4.3e-16 88.6 89 49.4
Os11g0621400 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D008785 2.8e-15 85.9 86 51.2
ATR0691G295 Amborella trichopoda HOM05D000049 ORTHO05D008785 5.2e-14 81.6 55 80.0
TAR628G1275 Trochodendron aralioides HOM05D000049 ORTHO05D008785 5.2e-14 81.6 69 60.9
FAN27G0752 Fragaria x ananassa HOM05D000049 ORTHO05D000027 8.9e-14 80.9 118 45.8
SalBow6G4602 Salvia bowleyana HOM05D010989 ORTHO05D013112 1.2e-13 80.5 117 47.9
SMO340G0196 Selaginella moellendorffii HOM05D000049 ORTHO05D008785 2.2e-12 76.3 76 51.3
AagrBONN_evm.TU.Sc2ySwM_117.2783 Anthoceros agrestis HOM05D000049 ORTHO05D008785 6.4e-12 74.7 75 50.7
COL.COLO4_15744 Corchorus olitorius HOM05D001416 ORTHO05D002549 3.3e-08 62.4 32 93.8
Os10g0395200 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D008785 1.8e-06 56.6 52 53.8


User provided reference genes

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