Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 1.1e-150 536.6 270 100.0
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 3.3e-102 375.6 230 84.8
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 1.3e-101 373.6 233 83.7
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 1.3e-93 347.1 231 79.7
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 1.2e-91 340.5 231 80.1
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 5.8e-91 338.2 234 79.1
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 1.2e-88 330.5 240 75.4
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 1.5e-86 323.6 243 73.7
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 1.4e-84 317.0 235 74.5
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.3e-82 310.5 230 74.3
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.1e-81 307.4 230 73.9
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 4.8e-77 292.0 234 70.1
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 8.2e-77 291.2 222 72.1
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 1.4e-76 290.4 216 74.5
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 6.9e-76 288.1 219 73.1
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 1.5e-75 287.0 217 71.0
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 1.7e-74 283.5 199 78.4
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 2.9e-74 282.7 224 70.5
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 3.8e-74 282.3 232 69.8
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 6.5e-74 281.6 199 76.9
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 1.4e-73 280.4 201 76.1
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 1.9e-73 280.0 243 67.9
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 3.2e-73 279.3 234 68.8
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 5.5e-73 278.5 197 77.2
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 9.4e-73 277.7 220 69.5
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 9.4e-73 277.7 218 69.3
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 9.4e-73 277.7 218 69.3
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.2e-72 277.3 201 75.6
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 4.7e-72 275.4 201 76.1
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 7.9e-72 274.6 213 70.0
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.8e-71 273.5 248 65.7
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 3.9e-71 272.3 218 67.9
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 3.9e-71 272.3 246 63.4
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 3.9e-71 272.3 187 77.5
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 5.1e-71 271.9 217 70.0
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 5.1e-71 271.9 201 71.1
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 3.3e-70 269.2 201 71.1
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 3.3e-70 269.2 235 66.0
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 4.4e-70 268.9 219 70.8
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 7.4e-70 268.1 204 71.1
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 1.3e-69 267.3 196 73.5
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 1.3e-69 267.3 196 73.5
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 1.7e-69 266.9 211 71.6
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 3.7e-69 265.8 220 68.2
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 3.7e-69 265.8 198 71.2
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 6.3e-69 265.0 220 67.7
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 6.3e-69 265.0 197 73.1
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 1.1e-68 264.2 215 68.8
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 2.4e-68 263.1 223 65.5
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 2.4e-68 263.1 223 66.4
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 2.4e-68 263.1 222 66.7
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 3.1e-68 262.7 197 73.1
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 5.3e-68 261.9 195 71.3
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 5.3e-68 261.9 203 71.9
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 5.3e-68 261.9 197 71.6
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 7.0e-68 261.5 192 72.4
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 9.1e-68 261.2 192 71.9
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 1.5e-67 260.4 197 71.1
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 1.5e-67 260.4 197 71.1
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 1.5e-67 260.4 197 71.1
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 1.5e-67 260.4 175 79.4
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 1.5e-67 260.4 214 70.6
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 2.0e-67 260.0 192 74.5
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 2.0e-67 260.0 235 65.1
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 2.0e-67 260.0 194 74.7
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 2.6e-67 259.6 198 70.2
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 2.6e-67 259.6 192 71.4
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 3.5e-67 259.2 204 70.1
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 3.5e-67 259.2 204 70.1
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 5.9e-67 258.5 208 71.2
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 7.7e-67 258.1 200 68.5
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 7.7e-67 258.1 191 71.7
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 7.7e-67 258.1 214 68.7
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.3e-66 257.3 194 70.1
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 1.3e-66 257.3 189 76.2
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 2.2e-66 256.5 195 73.3
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 3.8e-66 255.8 192 70.3
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 5.0e-66 255.4 201 68.2
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 8.5e-66 254.6 194 70.6
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 1.1e-65 254.2 195 70.3
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 1.1e-65 254.2 195 70.3
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.1e-65 254.2 192 70.3
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 1.9e-65 253.4 215 64.2
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 3.2e-65 252.7 194 69.6
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 4.2e-65 252.3 194 70.1
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 7.2e-65 251.5 196 67.9
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 1.2e-64 250.8 170 77.1
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 1.2e-64 250.8 169 76.9
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 1.2e-64 250.8 196 69.4
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 3.6e-64 249.2 189 70.4
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 4.7e-64 248.8 218 61.9
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 4.7e-64 248.8 218 61.0
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 6.1e-64 248.4 227 60.4
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 8.0e-64 248.1 222 61.7
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 8.0e-64 248.1 192 69.3
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 1.4e-63 247.3 227 61.2
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 1.8e-63 246.9 156 79.5
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 8.8e-63 244.6 223 63.7
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 1.5e-62 243.8 227 59.9
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 1.5e-62 243.8 203 66.0
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 3.3e-62 242.7 163 78.5
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 1.8e-60 236.9 194 64.4
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 2.6e-59 233.0 160 75.6
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 3.5e-59 232.6 170 73.5
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 7.7e-59 231.5 160 73.1
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 8.5e-58 228.0 172 68.0
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.1e-57 227.6 164 70.7
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 5.5e-57 225.3 160 71.2
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 3.6e-56 222.6 189 63.5
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 3.0e-55 219.5 189 61.9
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 3.7e-53 212.6 162 67.9
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 3.1e-52 209.5 145 76.6
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 7.0e-52 208.4 186 57.0
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 9.1e-52 208.0 152 74.3
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 2.9e-50 203.0 157 70.1
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 5.5e-49 198.7 185 61.6
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 5.5e-49 198.7 153 66.0
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 1.5e-46 190.7 238 51.3
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.4e-44 184.1 237 51.9
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 1.6e-43 180.6 187 58.8
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 3.5e-43 179.5 139 66.2
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 3.8e-42 176.0 125 76.0
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 8.0e-40 168.3 195 55.9
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 6.8e-39 165.2 114 78.1
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 2.6e-38 163.3 102 84.3
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 4.4e-38 162.5 99 87.9
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 4.4e-38 162.5 100 85.0
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 1.7e-37 160.6 101 83.2
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 3.2e-36 156.4 102 80.4
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.6e-35 154.1 101 77.2
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.3e-34 151.0 148 58.1
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 3.3e-33 146.4 105 69.5
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 7.3e-33 145.2 172 54.1
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 7.3e-33 145.2 189 47.1
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.5e-30 137.5 96 71.9
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 2.9e-29 133.3 118 67.8
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 8.6e-26 121.7 78 83.3
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 2.5e-25 120.2 99 65.7
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 4.3e-25 119.4 103 62.1
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 2.1e-24 117.1 78 75.6
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 1.1e-23 114.8 68 83.8
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 1.1e-23 114.8 139 51.8
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 1.3e-21 107.8 61 88.5
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 6.0e-19 99.0 107 52.3
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 1.3e-18 97.8 176 36.9
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 2.5e-17 93.6 64 78.1
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 3.3e-17 93.2 66 66.7
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 7.3e-17 92.0 59 79.7
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 9.5e-17 91.7 61 77.0
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 9.9e-14 81.6 55 78.2
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 9.9e-14 81.6 59 67.8
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 3.7e-13 79.7 51 82.4
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 1.4e-12 77.8 52 75.0
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 1.9e-12 77.4 58 70.7
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 2.5e-09 67.0 47 68.1
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 2.0e-06 57.4 39 76.9


User provided reference genes

Program Settings