Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 8.0e-219 763.5 383 100.0
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 4.1e-199 698.0 383 91.4
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 5.0e-197 691.0 383 90.9
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 4.0e-194 681.4 383 88.0
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 2.6e-193 678.7 383 86.4
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 3.7e-192 674.9 381 86.1
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 8.3e-192 673.7 383 85.4
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 4.6e-190 667.9 383 85.4
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 4.4e-185 651.4 385 82.9
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 4.9e-184 647.9 381 82.7
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 1.6e-182 642.9 389 81.5
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 2.7e-174 615.5 385 77.1
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 2.7e-174 615.5 385 77.1
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.0e-173 613.6 380 78.4
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 1.0e-173 613.6 385 78.7
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 2.5e-172 609.0 386 77.7
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 4.3e-172 608.2 386 75.6
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 7.3e-172 607.4 386 77.5
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 4.8e-171 604.7 377 76.1
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 6.2e-171 604.4 384 74.5
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 1.1e-170 603.6 381 76.1
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 5.3e-170 601.3 386 75.1
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 5.3e-170 601.3 390 74.6
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 6.9e-170 600.9 386 74.1
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 9.0e-170 600.5 386 73.3
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 3.4e-169 598.6 386 73.6
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 1.7e-168 596.3 386 74.1
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 1.4e-167 593.2 383 72.8
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 2.4e-167 592.4 386 73.3
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 2.4e-167 592.4 380 75.0
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 3.2e-167 592.0 384 74.0
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 1.2e-166 590.1 382 74.9
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 1.7e-165 586.3 384 73.2
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 5.1e-165 584.7 383 73.1
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 1.1e-164 583.6 383 72.8
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 3.3e-164 582.0 386 72.5
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 2.1e-163 579.3 391 71.6
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 4.8e-163 578.2 381 73.2
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 4.8e-163 578.2 392 71.2
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 6.2e-163 577.8 383 73.4
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 1.4e-162 576.6 393 71.5
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 1.4e-162 576.6 386 70.7
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 1.8e-162 576.2 385 73.0
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 2.4e-162 575.9 383 72.3
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 4.0e-162 575.1 387 73.1
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 4.0e-162 575.1 383 72.1
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 5.3e-162 574.7 380 72.4
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 9.0e-162 573.9 402 68.7
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 3.4e-161 572.0 385 70.9
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 5.8e-161 571.2 384 71.1
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 9.9e-161 570.5 386 70.2
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 2.9e-160 568.9 385 71.2
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 3.8e-160 568.5 518 58.7
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 4.9e-160 568.2 382 71.5
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 8.4e-160 567.4 384 71.6
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 2.4e-159 565.8 381 70.6
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 2.4e-159 565.8 384 71.1
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 5.4e-159 564.7 386 68.9
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 7.1e-159 564.3 386 70.5
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 2.1e-158 562.8 379 69.7
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 2.7e-158 562.4 386 68.7
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 4.6e-158 561.6 383 70.0
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 1.5e-156 556.6 386 68.4
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.9e-156 556.2 388 69.1
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 4.3e-156 555.1 384 68.8
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 4.3e-156 555.1 381 70.3
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 4.3e-156 555.1 380 69.2
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 4.3e-156 555.1 380 69.2
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 1.3e-155 553.5 379 68.9
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 1.6e-155 553.1 385 69.6
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 2.1e-155 552.7 383 67.9
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 1.1e-154 550.4 384 68.5
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 1.4e-154 550.1 384 68.5
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 4.5e-153 545.0 384 68.0
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 5.8e-153 544.7 384 67.2
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 1.0e-152 543.9 390 66.4
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 2.2e-152 542.7 385 66.8
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 1.3e-149 533.5 382 67.0
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 2.5e-148 529.3 381 69.8
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 2.5e-148 529.3 384 66.7
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 4.8e-147 525.0 383 67.4
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 6.2e-147 524.6 356 69.4
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.1e-146 523.9 352 71.9
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 1.8e-146 523.1 385 64.9
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 5.3e-146 521.5 385 64.7
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 1.5e-145 520.0 377 67.6
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 7.6e-145 517.7 384 63.0
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 2.9e-144 515.8 426 62.2
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 1.4e-143 513.5 381 67.7
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 4.2e-143 511.9 383 65.3
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 9.3e-143 510.8 347 71.5
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 1.6e-142 510.0 310 79.0
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 1.3e-141 506.9 382 66.2
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 5.1e-141 505.0 385 63.1
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 8.7e-141 504.2 379 64.1
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 1.6e-139 500.0 386 64.2
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 3.3e-132 475.7 308 74.4
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 7.4e-132 474.6 291 75.9
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 5.9e-129 464.9 291 74.6
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.6e-126 456.8 307 70.7
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 1.7e-123 446.8 332 66.6
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 1.3e-120 437.2 307 70.4
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 2.5e-119 433.0 383 59.0
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 2.7e-118 429.5 379 54.6
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 1.5e-116 423.7 262 75.6
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 5.0e-112 408.7 379 53.8
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 3.5e-105 386.0 230 77.4
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 5.9e-105 385.2 266 68.8
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.3e-104 384.0 403 47.1
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 2.2e-104 383.3 378 50.3
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 2.9e-104 382.9 380 49.7
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 3.6e-102 375.9 232 75.0
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 5.2e-93 345.5 270 64.4
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 1.3e-88 330.9 230 71.3
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 6.2e-70 268.9 232 60.8
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 1.7e-64 250.8 153 75.8
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 1.3e-59 234.6 428 36.2
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 1.7e-59 234.2 391 36.3
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 1.7e-56 224.2 423 35.2
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 5.1e-56 222.6 153 72.5
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 1.5e-47 194.5 156 60.3
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 6.4e-43 179.1 115 75.7
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 3.1e-37 160.2 107 65.4
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 1.2e-33 148.3 180 42.2
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 2.4e-29 134.0 144 54.9
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 6.7e-24 115.9 101 63.4
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 2.8e-22 110.5 66 74.2
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 2.6e-20 104.0 153 37.3
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 2.5e-18 97.4 151 38.4
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 6.1e-17 92.8 66 68.2
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 1.2e-12 78.6 113 39.8
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 4.5e-12 76.6 71 52.1
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 5.9e-12 76.3 36 100.0
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 1.3e-11 75.1 69 46.4
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 7.2e-10 69.3 36 91.7
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 4.4e-07 60.1 81 40.7


User provided reference genes

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