Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G115900 Glycine max HOM05D007757 ORTHO05D009619 4.1e-54 214.9 149 100.0
Glyma.10G274100 Glycine max HOM05D007757 ORTHO05D009619 7.3e-43 177.6 153 70.6
VMungo0720G1194 Vigna mungo HOM05D007757 ORTHO05D009619 1.9e-35 152.9 154 64.9
Phvul.007G027400 Phaseolus vulgaris HOM05D007757 ORTHO05D009619 1.6e-34 149.8 153 64.7
Medtr1g110790 Medicago truncatula HOM05D007757 ORTHO05D009619 7.8e-29 131.0 148 60.1
Lalb_Chr02g0145961 Lupinus albus HOM05D007757 ORTHO05D009619 3.1e-25 119.0 143 46.2
Psat6g227960 Pisum sativum HOM05D007757 ORTHO05D009619 3.1e-25 119.0 149 45.6
TPR.G1503 Trifolium pratense HOM05D007757 ORTHO05D009619 5.2e-25 118.2 70 71.4
Ca_11172_v3 Cicer arietinum L. HOM05D007757 ORTHO05D009619 2.6e-24 115.9 72 68.1
Lalb_Chr06g0166051 Lupinus albus HOM05D007757 ORTHO05D009619 4.9e-23 111.7 68 72.1
Lj5g0000209 Lotus japonicus HOM05D007757 ORTHO05D009619 4.3e-19 98.6 64 70.3
Potri.010G124700 Populus trichocarpa HOM05D007757 ORTHO05D009619 2.1e-13 79.7 59 55.9
COL.COLO4_37757 Corchorus olitorius HOM05D007757 ORTHO05D009619 3.5e-13 79.0 64 54.7
CiPaw.15G085600 Carya illinoinensis HOM05D007757 ORTHO05D009619 7.9e-13 77.8 59 52.5
Duzib248G1397 Durio zibethinus HOM05D007757 ORTHO05D009619 7.9e-13 77.8 64 53.1
Manes.06G067700 Manihot esculenta HOM05D007757 ORTHO05D009619 2.3e-12 76.3 55 58.2
TWI75G0183 Tripterygium wilfordii HOM05D007757 ORTHO05D009619 3.0e-12 75.9 63 50.8
Haze_17487 Corylus avellana HOM05D007757 ORTHO05D009619 5.1e-12 75.1 63 50.8
Sopen05g005100 Solanum pennellii HOM05D007757 ORTHO05D009619 8.7e-12 74.3 49 63.3
Peaxi162Scf00382g00073 Petunia axillaris HOM05D007757 ORTHO05D009619 1.5e-11 73.6 51 60.8
THA.LOC104821934 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 1.9e-11 73.2 53 58.5
Sabra10G0094600 Salix brachista HOM05D007757 ORTHO05D009619 3.3e-11 72.4 59 50.8
CAN.G610.82 Capsicum annuum HOM05D007757 ORTHO05D009619 4.3e-11 72.0 51 60.8
Solyc05g009340.1 Solanum lycopersicum HOM05D007757 ORTHO05D009619 5.6e-11 71.6 49 61.2
PGSC0003DMG400014580 Solanum tuberosum HOM05D007757 ORTHO05D009619 5.6e-11 71.6 49 61.2
Thecc.02G230200 Theobroma cacao HOM05D007757 ORTHO05D009619 5.6e-11 71.6 63 49.2
Actinidia16654 Actinidia chinensis HOM05D007757 ORTHO05D009619 9.6e-11 70.9 59 54.2
Nitab4.5_0000791g0090 Nicotiana tabacum HOM05D007757 ORTHO05D009619 1.6e-10 70.1 49 59.2
Peaxi162Scf00382g00086 Petunia axillaris HOM05D007757 ORTHO05D009619 1.6e-10 70.1 51 56.9
THA.LOC104800008 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 2.1e-10 69.7 64 48.4
Actinidia14892 Actinidia chinensis HOM05D007757 ORTHO05D009619 6.2e-10 68.2 61 47.5
DCAR_030156 Daucus carota HOM05D007757 ORTHO05D009619 6.2e-10 68.2 61 47.5
Prupe.1G311500 Prunus persica HOM05D007757 ORTHO05D009619 8.1e-10 67.8 46 60.9
Gohir.D01G175600 Gossypium hirsutum HOM05D007757 ORTHO05D009619 1.1e-09 67.4 59 54.2
Gorai.002G217900 Gossypium raimondii HOM05D007757 ORTHO05D009619 1.1e-09 67.4 59 54.2
Cpa.g.sc1.36 Carica papaya HOM05D007757 ORTHO05D009619 2.4e-09 66.2 55 49.1
Gohir.D04G138100 Gossypium hirsutum HOM05D007757 ORTHO05D009619 4.0e-09 65.5 60 50.0
Gorai.012G123000 Gossypium raimondii HOM05D007757 ORTHO05D009619 4.0e-09 65.5 60 50.0
Rhsim09G0107900 Rhododendron simsii HOM05D007757 ORTHO05D009619 9.0e-09 64.3 65 49.2
CANSAT01G0578 Cannabis sativa HOM05D007757 ORTHO05D009619 1.2e-08 63.9 55 56.4
MD13G1041700 Malus domestica HOM05D007757 ORTHO05D009619 1.5e-08 63.5 54 53.7
Nn4g23846 Nelumbo nucifera HOM05D021434 ORTHO05D009619 2.0e-08 63.2 61 44.3
Sc11g0003440 Simmondsia chinensis HOM05D007757 ORTHO05D009619 2.6e-08 62.8 55 50.9
Nn3g17018 Nelumbo nucifera HOM05D021434 ORTHO05D009619 3.4e-08 62.4 61 42.6
CARHR026040 Cardamine hirsuta HOM05D007757 ORTHO05D009619 4.5e-08 62.0 60 41.7
Nn3g17848 Nelumbo nucifera HOM05D021434 ORTHO05D009619 5.8e-08 61.6 63 39.7
AT1G68500 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 7.6e-08 61.2 46 50.0
Migut.E00343 Erythranthe guttata HOM05D007757 ORTHO05D009619 7.6e-08 61.2 51 52.9
BcaC03g14960 Brassica carinata HOM05D007757 ORTHO05D009619 9.9e-08 60.8 53 49.1
BcaC08g46271 Brassica carinata HOM05D007757 ORTHO05D009619 9.9e-08 60.8 53 49.1
A07p34900 Brassica napus HOM05D007757 ORTHO05D009619 9.9e-08 60.8 53 49.1
C02p24780 Brassica napus HOM05D007757 ORTHO05D009619 9.9e-08 60.8 53 49.1
C06p41430 Brassica napus HOM05D007757 ORTHO05D009619 9.9e-08 60.8 53 49.1
BolC2t08570H Brassica oleracea HOM05D007757 ORTHO05D009619 9.9e-08 60.8 53 49.1
BolC6t39280H Brassica oleracea HOM05D007757 ORTHO05D009619 9.9e-08 60.8 53 49.1
BcaB03g15824 Brassica carinata HOM05D007757 ORTHO05D009619 1.3e-07 60.5 53 49.1
AT1G25422 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 1.7e-07 60.1 54 46.3
RcHm_v2.0_Chr4g0435141 Rosa chinensis HOM05D007757 ORTHO05D009619 1.7e-07 60.1 63 50.8
Sp5g23570 Schrenkiella parvula HOM05D007757 ORTHO05D009619 2.2e-07 59.7 53 47.2
AL2G27370 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 2.9e-07 59.3 43 51.2
BcaB05g24389 Brassica carinata HOM05D007757 ORTHO05D009619 4.9e-07 58.5 53 47.2
BraA02t06576Z Brassica rapa HOM05D007757 ORTHO05D009619 4.9e-07 58.5 53 47.2
Carub.0001s2507 Capsella rubella HOM05D007757 ORTHO05D009619 4.9e-07 58.5 57 49.1
Carub.0002s1501 Capsella rubella HOM05D007757 ORTHO05D009619 4.9e-07 58.5 41 51.2
Cc11_g10120 Coffea canephora HOM05D007757 ORTHO05D009619 4.9e-07 58.5 43 55.8
Thhalv10019384m.g Eutrema salsugineum HOM05D007757 ORTHO05D009619 6.4e-07 58.2 43 51.2
CARHR061280 Cardamine hirsuta HOM05D007757 ORTHO05D009619 8.4e-07 57.8 43 46.5
AL1G39890 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 1.1e-06 57.4 54 44.4
FvH4_4g27340 Fragaria vesca HOM05D007757 ORTHO05D009619 1.1e-06 57.4 51 51.0
FAN12G3266 Fragaria x ananassa HOM05D007757 ORTHO05D009619 1.1e-06 57.4 51 51.0
FAN12G3307 Fragaria x ananassa HOM05D007757 ORTHO05D009619 1.1e-06 57.4 51 51.0
MSTRG.2233 Avicennia marina HOM05D007757 ORTHO05D009619 1.9e-06 56.6 48 50.0
A02p15100 Brassica napus HOM05D007757 ORTHO05D009619 1.9e-06 56.6 43 48.8
FAN07G0332 Fragaria x ananassa HOM05D007757 ORTHO05D009619 1.9e-06 56.6 50 46.0
Ciclev10017153m.g Citrus clementina HOM05D007757 ORTHO05D009619 2.4e-06 56.2 61 44.3
MD16G1042600 Malus domestica HOM05D007757 ORTHO05D009619 2.4e-06 56.2 59 45.8


User provided reference genes

Program Settings