Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 0.0e+00 3128.2 1664 100.0
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 0.0e+00 2630.9 1669 85.6
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 0.0e+00 2056.2 1672 70.8
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 0.0e+00 1833.2 1669 65.7
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 0.0e+00 1725.7 1633 63.5
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 0.0e+00 1629.8 1695 58.6
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 0.0e+00 1509.6 1712 56.6
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 0.0e+00 1475.7 1708 54.9
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 0.0e+00 1432.2 1713 52.8
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 0.0e+00 1417.9 1729 52.1
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 0.0e+00 1389.4 1708 52.6
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 0.0e+00 1328.5 1769 50.3
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 0.0e+00 1207.6 1742 47.1
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 0.0e+00 1103.6 1553 47.1
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 1.2e-183 648.7 1868 34.9
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 9.6e-176 622.5 1849 34.7
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 1.1e-160 572.4 1849 33.7
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 1.0e-148 532.7 1925 33.1
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 6.3e-143 513.5 1879 31.8
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 2.1e-130 471.9 1887 31.3
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 2.4e-126 458.4 1807 31.2
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 2.5e-123 448.4 1800 31.2
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 1.3e-111 409.5 1759 29.7
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 4.8e-111 407.5 1775 29.5
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 7.0e-110 403.7 1894 29.9
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 1.9e-107 395.6 1878 27.6
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 5.5e-107 394.0 1789 29.9
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 3.4e-104 384.8 1877 29.8
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 5.9e-101 374.0 1947 29.9
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 1.3e-100 372.9 1793 29.1
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 8.9e-97 360.1 1724 28.2
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.8e-95 355.1 1837 27.7
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 8.3e-95 353.6 1753 27.7
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 8.3e-95 353.6 1936 28.6
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 2.7e-93 348.6 1752 29.1
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 5.9e-93 347.4 1950 28.3
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 7.8e-93 347.1 1713 28.5
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 4.7e-90 337.8 1689 28.9
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 3.1e-89 335.1 1709 28.0
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.6e-88 332.0 1777 29.1
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 5.4e-86 324.3 1845 27.8
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.6e-85 322.8 1702 27.7
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.0e-84 318.5 1703 28.0
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.5e-83 316.2 1841 28.0
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.5e-83 315.5 1835 28.7
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 5.6e-83 314.3 1823 27.7
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 3.6e-82 311.6 332 54.8
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 6.2e-82 310.8 1880 27.7
Psat2g132120 Pisum sativum HOM05D004836 ORTHO05D005150 2.3e-81 308.9 356 50.6
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 5.8e-80 304.3 2045 27.9
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 2.4e-78 298.9 1817 28.3
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 3.5e-77 295.0 1895 27.2
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 8.6e-76 290.4 2085 26.5
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 9.5e-75 287.0 1722 28.2
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 1.4e-73 283.1 1759 27.4
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 8.3e-71 273.9 1769 26.5
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 2.7e-69 268.9 1891 27.2
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 1.3e-68 266.5 1758 26.1
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 6.6e-68 264.2 1861 27.0
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.6e-66 258.5 463 47.1
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 1.1e-65 256.9 1768 27.9
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 4.0e-65 255.0 1799 27.0
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 5.2e-65 254.6 1780 27.0
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 5.2e-65 254.6 1725 27.4
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 8.9e-65 253.8 1788 24.8
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 2.6e-64 252.3 2073 26.3
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 2.2e-63 249.2 771 32.4
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 7.3e-59 234.2 2008 25.6
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 9.6e-59 233.8 460 38.0
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 2.8e-58 232.3 1799 26.1
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 4.8e-58 231.5 1840 25.9
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 1.4e-57 229.9 496 46.2
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 4.0e-57 228.4 682 37.7
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 2.6e-56 225.7 842 28.9
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 4.4e-56 224.9 1854 26.2
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 2.7e-53 215.7 2034 25.4
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 2.7e-53 215.7 2009 25.6
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.3e-52 212.6 1850 25.5
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 3.9e-52 211.8 1952 25.7
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 8.7e-52 210.7 1831 25.3
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 2.5e-51 209.1 1647 24.7
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 7.3e-51 207.6 1857 25.1
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 9.6e-51 207.2 346 41.6
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 4.8e-50 204.9 1597 27.1
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 4.2e-46 191.8 177 62.7
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 2.7e-45 189.1 2000 24.9
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 6.0e-45 188.0 458 44.8
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 2.1e-42 179.5 871 28.8
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 1.4e-41 176.8 1751 25.3
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 4.9e-39 168.3 655 33.9
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 1.9e-38 166.4 1751 25.6
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 5.5e-38 164.9 485 37.5
Medtr1g111690 Medicago truncatula HOM05D006281 ORTHO05D005138 1.6e-37 163.3 228 46.1
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 3.5e-37 162.2 626 33.2
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 1.0e-36 160.6 1745 24.4
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 1.1e-35 157.1 549 36.8
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 5.7e-35 154.8 716 32.1
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 5.7e-35 154.8 687 32.8
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 9.6e-35 154.1 1858 25.2
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 2.0e-32 146.4 591 29.4
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 2.6e-32 146.0 516 34.7
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 8.4e-31 141.0 1771 24.4
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 1.6e-29 136.7 666 32.9
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 2.7e-29 136.0 1809 23.9
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 4.3e-27 128.6 666 26.9
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 4.3e-27 128.6 1802 24.4
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 1.6e-26 126.7 602 31.4
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 1.6e-26 126.7 1921 24.8
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 6.3e-26 124.8 277 33.9
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 8.2e-26 124.4 675 31.9
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 4.1e-25 122.1 1122 24.5
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 5.3e-25 121.7 1881 24.1
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 7.7e-24 117.9 671 32.5
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 1.0e-23 117.5 671 32.5
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 8.5e-23 114.4 194 39.2
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 1.9e-22 113.2 1819 24.2
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 7.2e-22 111.3 259 47.5
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 1.2e-21 110.5 670 31.0
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 7.4e-19 101.3 549 26.0
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 9.7e-19 100.9 107 50.5
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.7e-15 90.1 498 27.3
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 1.4e-14 87.0 495 30.3
Medtr8g465700 Medicago truncatula HOM05D000451 ORTHO05D000351 1.6e-13 83.6 112 42.9
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 4.7e-13 82.0 88 61.4
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 6.1e-13 81.6 187 36.9
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.4e-12 80.5 256 29.7
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 3.3e-11 75.9 446 30.5
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 7.4e-11 74.7 425 26.4
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 9.7e-11 74.3 233 32.6
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 1.7e-10 73.6 275 30.2
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 4.8e-10 72.0 462 23.8
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 6.3e-10 71.6 260 33.8
PSO063G5346 Papaver somniferum HOM05D004836 ORTHO05D005150 3.1e-09 69.3 172 32.6
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 4.1e-09 68.9 67 52.2
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 9.1e-09 67.8 188 26.1
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 5.9e-08 65.1 445 24.5
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 1.7e-07 63.5 51 72.5
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 6.5e-07 61.6 77 41.6
Psat7g120880 Pisum sativum HOM05D000120 ORTHO05D030268 8.5e-07 61.2 48 66.7
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 4.2e-06 58.9 85 49.4
Mapoly0020s0135 Marchantia polymorpha HOM05D014698 ORTHO05D016532 5.5e-06 58.5 64 48.4


User provided reference genes

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