Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G110900 Glycine max HOM05D007506 ORTHO05D008409 3.8e-39 164.5 89 100.0
Glyma.10G277900 Glycine max HOM05D007506 ORTHO05D008409 9.7e-27 123.2 87 81.6
VMungo0720G0153 Vigna mungo HOM05D007506 ORTHO05D008409 3.2e-22 108.2 87 72.4
Phvul.007G023500 Phaseolus vulgaris HOM05D007506 ORTHO05D008409 7.2e-22 107.1 87 73.6
Medtr1g111840 Medicago truncatula HOM05D007506 ORTHO05D008409 4.4e-19 97.8 89 67.4
Lj5g0016646 Lotus japonicus HOM05D007506 ORTHO05D008409 2.4e-17 92.0 85 67.1
Ca_25653_v3 Cicer arietinum L. HOM05D007506 ORTHO05D008409 2.7e-16 88.6 89 64.0
TPR.G2499 Trifolium pratense HOM05D007506 ORTHO05D008409 3.5e-16 88.2 64 71.9
Lalb_Chr06g0166331 Lupinus albus HOM05D007506 ORTHO05D008409 5.0e-15 84.3 84 61.9
arahy.Tifrunner.gnm1.ann1.DEP6R1 Arachis hypogaea HOM05D007506 ORTHO05D008409 1.5e-14 82.8 57 77.2
arahy.Tifrunner.gnm1.ann1.MBF964 Arachis hypogaea HOM05D007506 ORTHO05D008409 1.5e-14 82.8 57 77.2
Psat6g238400 Pisum sativum HOM05D007506 ORTHO05D008409 7.2e-14 80.5 57 75.4
arahy.Tifrunner.gnm1.ann1.KXIJ9T Arachis hypogaea HOM05D007506 ORTHO05D008409 1.0e-12 76.6 58 70.7
Lalb_Chr02g0146201 Lupinus albus HOM05D007506 ORTHO05D008409 1.0e-12 76.6 89 60.7
PGR142G2547 Punica granatum HOM05D007506 ORTHO05D008409 3.4e-11 71.6 89 57.3
Cc02_g09560 Coffea canephora HOM05D007506 ORTHO05D008409 1.7e-10 69.3 64 67.2
Nitab4.5_0002586g0040 Nicotiana tabacum HOM05D007506 ORTHO05D008409 6.3e-10 67.4 83 57.8
Thecc.10G114000 Theobroma cacao HOM05D007506 ORTHO05D008409 1.8e-09 65.9 62 69.4
Haze_03301 Corylus avellana HOM05D007506 ORTHO05D008409 4.1e-09 64.7 66 63.6
Ciclev10017346m.g Citrus clementina HOM05D007506 ORTHO05D008409 3.5e-08 61.6 60 66.7
Lsat_1_v5_gn_2_104161 Lactuca sativa HOM05D021830 ORTHO05D025293 1.0e-07 60.1 77 50.6
Oeu027974.1 Olea europaea HOM05D007506 ORTHO05D008409 1.3e-07 59.7 58 65.5
arahy.Tifrunner.gnm1.ann1.X5G790 Arachis hypogaea HOM05D007506 ORTHO05D008409 2.3e-07 58.9 43 72.1
Peaxi162Scf00519g00621 Petunia axillaris HOM05D007506 ORTHO05D008409 2.3e-07 58.9 56 60.7
THA.LOC104816468 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 2.3e-07 58.9 93 48.4
Duzib106G0675 Durio zibethinus HOM05D007506 ORTHO05D008409 5.0e-07 57.8 62 56.5
CiPaw.14G033800 Carya illinoinensis HOM05D007506 ORTHO05D008409 6.6e-07 57.4 90 50.0
CARHR208540 Cardamine hirsuta HOM05D012863 ORTHO05D008409 8.6e-07 57.0 71 54.9
Dinv12843 Davidia involucrata HOM05D007506 ORTHO05D008409 8.6e-07 57.0 63 63.5
HanXRQChr12g0368271 Helianthus annuus HOM05D021830 ORTHO05D008409 8.6e-07 57.0 57 57.9
RcHm_v2.0_Chr1g0331731 Rosa chinensis HOM05D007506 ORTHO05D008409 8.6e-07 57.0 88 51.1
THA.LOC109117254 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 8.6e-07 57.0 77 53.2
PSO801G0534 Papaver somniferum HOM05D007506 ORTHO05D008409 1.1e-06 56.6 87 50.6
Zm00001eb242800 Zea mays HOM05D007506 ORTHO05D008409 1.1e-06 56.6 56 62.5
Migut.F00865 Erythranthe guttata HOM05D007506 ORTHO05D008409 3.3e-06 55.1 64 59.4
Hund06790 Selenicereus undatus HOM05D007506 ORTHO05D008409 3.3e-06 55.1 73 54.8
Manes.07G086800 Manihot esculenta HOM05D007506 ORTHO05D008409 4.3e-06 54.7 48 68.8
Potri.010G240401 Populus trichocarpa HOM05D007506 ORTHO05D008409 4.3e-06 54.7 87 48.3
QL04p046828 Quercus lobata HOM05D007506 ORTHO05D008409 4.3e-06 54.7 85 51.8
Sabra08G0010500 Salix brachista HOM05D007506 ORTHO05D008409 4.3e-06 54.7 61 60.7
arahy.Tifrunner.gnm1.ann1.C6ZGU5 Arachis hypogaea HOM05D007506 ORTHO05D008409 5.6e-06 54.3 38 71.1
PSO339G4482 Papaver somniferum HOM05D007506 ORTHO05D008409 5.6e-06 54.3 87 49.4
CSS0050385 Camellia sinensis var. sinensis HOM05D007506 ORTHO05D008409 7.3e-06 53.9 56 66.1
Atru.chr12.1049 Acer truncatum HOM05D007506 ORTHO05D008409 9.5e-06 53.5 59 62.7
AL6G14410 Arabidopsis lyrata HOM05D012863 ORTHO05D008409 9.5e-06 53.5 86 44.2
arahy.Tifrunner.gnm1.ann1.HD4K12 Arachis hypogaea HOM05D000602 ORTHO05D085448 9.5e-06 53.5 34 76.5
Solyc11g006750.1 Solanum lycopersicum HOM05D007506 ORTHO05D008409 9.5e-06 53.5 58 63.8
Sopen11g002680 Solanum pennellii HOM05D007506 ORTHO05D008409 9.5e-06 53.5 58 63.8


User provided reference genes

Program Settings