Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 3.9e-57 224.6 111 100.0
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 1.7e-49 199.1 117 88.9
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 2.1e-47 192.2 113 88.5
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 2.4e-43 178.7 109 81.7
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 1.5e-40 169.5 112 77.7
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 3.3e-40 168.3 112 75.9
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 3.3e-40 168.3 115 74.8
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 5.6e-40 167.5 113 75.2
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 5.6e-40 167.5 115 76.5
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 2.1e-39 165.6 116 76.7
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.8e-38 162.5 111 73.9
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 9.0e-38 160.2 111 72.1
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 9.0e-38 160.2 114 71.9
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 9.0e-38 160.2 114 71.1
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.2e-37 159.8 114 70.2
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 2.0e-37 159.1 112 74.1
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.6e-37 158.7 114 71.1
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 3.4e-37 158.3 111 73.9
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 3.4e-37 158.3 114 71.9
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 3.4e-37 158.3 114 73.7
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 7.6e-37 157.1 115 69.6
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 7.6e-37 157.1 87 85.1
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 1.3e-36 156.4 114 70.2
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 1.7e-36 156.0 109 73.4
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 1.7e-36 156.0 111 69.4
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 2.2e-36 155.6 108 72.2
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 4.9e-36 154.5 113 71.7
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 4.9e-36 154.5 114 69.3
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 4.9e-36 154.5 93 79.6
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 4.9e-36 154.5 93 79.6
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 4.9e-36 154.5 93 79.6
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 4.9e-36 154.5 114 67.5
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 4.9e-36 154.5 85 84.7
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 4.9e-36 154.5 85 84.7
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 8.4e-36 153.7 89 80.9
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 1.1e-35 153.3 116 68.1
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.1e-35 153.3 115 72.2
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.1e-35 153.3 115 67.8
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 1.1e-35 153.3 85 84.7
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 1.4e-35 152.9 114 71.9
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.4e-35 152.9 115 68.7
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 1.4e-35 152.9 88 83.0
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.9e-35 152.5 109 71.6
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.9e-35 152.5 116 72.4
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.9e-35 152.5 85 82.4
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.2e-35 151.8 86 82.6
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 4.2e-35 151.4 109 70.6
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 4.2e-35 151.4 111 70.3
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 5.4e-35 151.0 88 83.0
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 5.4e-35 151.0 88 84.1
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 1.6e-34 149.4 85 81.2
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 1.6e-34 149.4 85 82.4
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 2.1e-34 149.1 87 83.9
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 2.1e-34 149.1 87 83.9
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 3.5e-34 148.3 111 65.8
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 7.9e-34 147.1 119 66.4
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 7.9e-34 147.1 115 68.7
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 7.9e-34 147.1 96 81.2
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.0e-33 146.7 116 64.7
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 1.0e-33 146.7 113 69.0
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.3e-33 146.4 110 66.4
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 1.3e-33 146.4 114 68.4
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.8e-33 146.0 114 64.0
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 3.0e-33 145.2 110 65.5
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 6.7e-33 144.1 80 80.0
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 1.1e-32 143.3 82 85.4
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 1.1e-32 143.3 111 67.6
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.5e-32 142.9 88 78.4
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 1.5e-32 142.9 82 81.7
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.9e-32 142.5 114 65.8
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.9e-32 142.5 88 77.3
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 1.9e-32 142.5 114 64.0
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 2.5e-32 142.1 88 78.4
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 3.3e-32 141.7 85 75.3
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 3.3e-32 141.7 116 65.5
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 3.3e-32 141.7 83 80.7
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 4.3e-32 141.4 76 88.2
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 4.3e-32 141.4 142 56.3
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 4.3e-32 141.4 88 79.5
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 5.6e-32 141.0 114 64.9
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 5.6e-32 141.0 114 64.9
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 7.4e-32 140.6 83 79.5
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 7.4e-32 140.6 89 77.5
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 9.6e-32 140.2 107 67.3
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 9.6e-32 140.2 155 52.3
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 9.6e-32 140.2 114 64.9
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.3e-31 139.8 113 62.8
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.3e-31 139.8 98 72.4
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.3e-31 139.8 111 66.7
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 1.6e-31 139.4 113 61.9
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.6e-31 139.4 114 63.2
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 1.6e-31 139.4 88 76.1
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 2.1e-31 139.0 114 62.3
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 2.1e-31 139.0 92 71.7
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 3.7e-31 138.3 117 60.7
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 3.7e-31 138.3 114 62.3
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 3.7e-31 138.3 114 62.3
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 3.7e-31 138.3 114 62.3
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 3.7e-31 138.3 114 62.3
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 3.7e-31 138.3 113 61.9
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 6.2e-31 137.5 113 61.9
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 6.2e-31 137.5 85 72.9
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 6.2e-31 137.5 85 76.5
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 1.1e-30 136.7 114 62.3
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.1e-30 136.7 107 68.2
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.4e-30 136.3 103 69.9
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 1.8e-30 136.0 85 74.1
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 4.0e-30 134.8 93 69.9
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.0e-30 134.8 77 83.1
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 5.3e-30 134.4 113 60.2
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 5.3e-30 134.4 83 78.3
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 6.9e-30 134.0 111 68.5
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 9.0e-30 133.7 113 61.9
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.0e-30 133.7 77 81.8
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 9.0e-30 133.7 113 61.9
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.2e-29 133.3 93 69.9
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 7.6e-29 130.6 133 53.4
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 2.2e-28 129.0 80 75.0
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.2e-28 129.0 90 66.7
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.9e-28 128.6 86 67.4
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 4.9e-28 127.9 115 58.3
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 8.4e-28 127.1 82 72.0
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 1.4e-27 126.3 114 58.8
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 4.2e-27 124.8 90 65.6
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 3.5e-26 121.7 117 58.1
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 1.3e-25 119.8 116 58.6
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 1.3e-25 119.8 72 77.8
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 8.7e-25 117.1 81 66.7
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 7.4e-24 114.0 77 67.5
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 9.6e-24 113.6 85 63.5
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 9.6e-24 113.6 77 67.5
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 6.2e-23 110.9 88 67.0
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.1e-22 110.2 76 67.1
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 1.4e-22 109.8 84 69.0
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 3.1e-22 108.6 64 81.2
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 6.9e-22 107.5 84 66.7
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 7.6e-21 104.0 113 55.8
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.3e-20 103.2 83 66.3
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.2e-20 102.4 92 60.9
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 3.8e-20 101.7 72 69.4
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 4.2e-19 98.2 81 64.2
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 1.6e-18 96.3 58 79.3
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 2.3e-17 92.4 74 60.8
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 3.0e-17 92.0 92 50.0
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 3.0e-17 92.0 77 57.1
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 3.0e-17 92.0 77 57.1
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 1.1e-16 90.1 94 53.2
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 1.5e-16 89.7 50 86.0
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 1.5e-16 89.7 87 52.9
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 7.4e-16 87.4 51 80.4
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.1e-14 83.6 61 68.9
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 5.3e-14 81.3 75 57.3
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 4.5e-13 78.2 92 43.5
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 3.8e-12 75.1 55 65.5
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 5.0e-12 74.7 55 63.6
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.5e-11 72.4 54 64.8
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 9.4e-11 70.5 78 51.3
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 6.1e-10 67.8 50 72.0
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 8.8e-09 63.9 72 45.8
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 1.1e-08 63.5 70 51.4
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 8.2e-07 57.4 65 41.5
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 8.2e-07 57.4 65 41.5


User provided reference genes

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