Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G095000 Glycine max HOM05D004955 ORTHO05D005965 0.0e+00 1106.7 560 100.0
Glyma.07G096600 Glycine max HOM05D004955 ORTHO05D005965 3.8e-312 1073.9 562 97.2
VMungo1215G2917 Vigna mungo HOM05D004955 ORTHO05D005965 1.2e-279 966.1 560 87.7
Phvul.002G003600 Phaseolus vulgaris HOM05D004955 ORTHO05D005965 3.0e-275 951.4 560 86.8
Ca_24631_v3 Cicer arietinum L. HOM05D004955 ORTHO05D005965 1.1e-269 932.9 560 84.3
arahy.Tifrunner.gnm1.ann1.JVPY2N Arachis hypogaea HOM05D004955 ORTHO05D005965 4.2e-269 931.0 555 84.3
arahy.Tifrunner.gnm1.ann1.U6D9EY Arachis hypogaea HOM05D004955 ORTHO05D005965 4.2e-269 931.0 555 84.3
Psat2g174720 Pisum sativum HOM05D004955 ORTHO05D005965 8.8e-267 923.3 560 83.2
Lj2g0012431 Lotus japonicus HOM05D004955 ORTHO05D005965 2.9e-262 908.3 555 82.5
Medtr5g013970 Medicago truncatula HOM05D004955 ORTHO05D005965 6.5e-262 907.1 555 83.4
QL12p007112 Quercus lobata HOM05D004955 ORTHO05D005965 7.3e-245 850.5 562 77.6
Prupe.5G046300 Prunus persica HOM05D004955 ORTHO05D005965 4.9e-241 837.8 562 75.6
RcHm_v2.0_Chr7g0208321 Rosa chinensis HOM05D004955 ORTHO05D005965 2.0e-239 832.4 562 75.4
Dinv28916 Davidia involucrata HOM05D004955 ORTHO05D005965 6.0e-239 830.9 562 75.1
FvH4_5g21180 Fragaria vesca HOM05D004955 ORTHO05D005965 1.7e-238 829.3 557 75.4
GSVIVG01013229001 Vitis vinifera HOM05D004955 ORTHO05D005965 1.7e-238 829.3 561 76.1
Lalb_Chr16g0379231 Lupinus albus HOM05D004955 ORTHO05D005965 5.0e-238 827.8 498 84.5
GSVIVG01011242001 Vitis vinifera HOM05D004955 ORTHO05D005965 1.5e-237 826.2 561 75.9
MD06G1040100 Malus domestica HOM05D004955 ORTHO05D005965 3.3e-237 825.1 563 74.8
COL.COLO4_17563 Corchorus olitorius HOM05D004955 ORTHO05D005965 1.6e-236 822.8 561 74.7
Gorai.002G043000 Gossypium raimondii HOM05D004955 ORTHO05D005965 2.1e-236 822.4 561 74.0
Gohir.A01G044000 Gossypium hirsutum HOM05D004955 ORTHO05D005965 4.7e-236 821.2 561 73.6
Gohir.D01G034800 Gossypium hirsutum HOM05D004955 ORTHO05D005965 8.1e-236 820.5 561 73.8
FAN08G3652 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.1e-235 820.1 558 75.3
FAN18G2324 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.4e-235 819.7 576 72.9
Potri.001G146900 Populus trichocarpa HOM05D004955 ORTHO05D005965 1.4e-235 819.7 561 73.8
Thecc.07G110200 Theobroma cacao HOM05D004955 ORTHO05D005965 3.1e-235 818.5 561 74.5
Duzib213G0438 Durio zibethinus HOM05D004955 ORTHO05D005965 6.8e-235 817.4 561 73.6
CSS0030337 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 1.2e-234 816.6 562 74.6
CSS0027312 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 1.5e-234 816.2 562 74.6
Ciclev10031124m.g Citrus clementina HOM05D004955 ORTHO05D005965 1.9e-232 809.3 560 73.2
Rhsim09G0128800 Rhododendron simsii HOM05D004955 ORTHO05D005965 4.1e-232 808.1 562 74.2
TWI81G0724 Tripterygium wilfordii HOM05D004955 ORTHO05D005965 1.0e-230 803.5 561 73.1
vmacro21668 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 1.7e-230 802.7 561 74.0
Sabra01G0115600 Salix brachista HOM05D004955 ORTHO05D005965 3.0e-230 802.0 561 73.1
TAR375G0042 Trochodendron aralioides HOM05D004955 ORTHO05D005965 3.0e-230 802.0 562 73.5
CiPaw.12G060300 Carya illinoinensis HOM05D004955 ORTHO05D005965 1.5e-229 799.7 559 73.9
DCAR_005602 Daucus carota HOM05D004955 ORTHO05D005965 1.5e-229 799.7 557 73.1
FAN13G2236 Fragaria x ananassa HOM05D004955 ORTHO05D005965 2.5e-229 798.9 578 72.0
Nitab4.5_0002055g0140 Nicotiana tabacum HOM05D004955 ORTHO05D005965 2.1e-228 795.8 562 72.6
Sopen08g025850 Solanum pennellii HOM05D004955 ORTHO05D005965 2.8e-228 795.4 562 73.0
Solyc08g077270.4 Solanum lycopersicum HOM05D004955 ORTHO05D005965 1.1e-227 793.5 562 72.4
Eucgr.D02153 Eucalyptus grandis HOM05D004955 ORTHO05D005965 5.2e-227 791.2 555 73.0
FAN04G2254 Fragaria x ananassa HOM05D004955 ORTHO05D005965 2.0e-226 789.3 569 72.2
PGR031G1993 Punica granatum HOM05D004955 ORTHO05D005965 2.0e-226 789.3 560 71.8
Hund14430 Selenicereus undatus HOM05D004955 ORTHO05D005965 3.4e-226 788.5 571 72.2
Atru.BG.31.p Acer truncatum HOM05D004955 ORTHO05D005965 1.3e-225 786.6 535 74.8
EL10Ac5g12196 Beta vulgaris HOM05D004955 ORTHO05D005965 2.2e-225 785.8 561 71.5
Lj3A396G10 Lonicera japonica HOM05D004955 ORTHO05D005965 3.2e-224 781.9 560 71.6
CAN.G799.17 Capsicum annuum HOM05D004955 ORTHO05D005965 4.1e-224 781.6 562 72.1
Sc07g0008830 Simmondsia chinensis HOM05D004955 ORTHO05D005965 6.0e-223 777.7 562 69.9
Nn1g00613 Nelumbo nucifera HOM05D004955 ORTHO05D005965 7.8e-223 777.3 561 71.8
MD16G1269200 Malus domestica HOM05D004955 ORTHO05D005965 1.3e-222 776.5 570 71.1
Cc05_g03300 Coffea canephora HOM05D004955 ORTHO05D005965 2.3e-222 775.8 561 70.6
Cpa.g.sc39.114 Carica papaya HOM05D004955 ORTHO05D005965 3.0e-222 775.4 561 70.4
MBI04_g44837_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 1.5e-221 773.1 577 70.4
Peaxi162Scf00084g00922 Petunia axillaris HOM05D004955 ORTHO05D005965 4.3e-221 771.5 589 68.8
Oeu039341.2 Olea europaea HOM05D004955 ORTHO05D005965 4.7e-220 768.1 584 68.5
MSTRG.1970 Avicennia marina HOM05D004955 ORTHO05D005965 1.2e-218 763.5 562 70.5
Aqoxy3G03106 Aquilegia oxysepala HOM05D004955 ORTHO05D005965 2.6e-218 762.3 586 67.2
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 2.6e-218 762.3 541 73.6
PSO063G1154 Papaver somniferum HOM05D004955 ORTHO05D005965 3.4e-218 761.9 561 69.5
CsaV3_1G038770 Cucumis sativus L. HOM05D004955 ORTHO05D005965 9.9e-218 760.4 561 69.9
PSO017G5366 Papaver somniferum HOM05D004955 ORTHO05D005965 1.3e-217 760.0 561 69.2
THA.LOC104814429 Tarenaya hassleriana HOM05D004955 ORTHO05D005965 4.9e-217 758.1 557 70.0
Migut.E00912 Erythranthe guttata HOM05D004955 ORTHO05D005965 5.4e-216 754.6 556 70.7
Haze_07894 Corylus avellana HOM05D004955 ORTHO05D005965 1.2e-215 753.4 562 70.3
Migut.E00798 Erythranthe guttata HOM05D004955 ORTHO05D005965 1.6e-215 753.1 556 70.5
AUR62007230 Chenopodium quinoa HOM05D004955 ORTHO05D005965 2.1e-215 752.7 566 69.4
MELO3C015301.2 Cucumis melo HOM05D004955 ORTHO05D005965 2.1e-215 752.7 561 69.9
AUR62018770 Chenopodium quinoa HOM05D004955 ORTHO05D005965 2.7e-215 752.3 561 70.1
PSO541G5086 Papaver somniferum HOM05D004955 ORTHO05D005965 2.7e-215 752.3 561 68.3
Sed0006321 Sechium edule HOM05D004955 ORTHO05D005965 2.7e-215 752.3 561 70.2
SalBow6G1446 Salvia bowleyana HOM05D004955 ORTHO05D005965 7.8e-215 750.7 562 68.7
CANSAT80G1132 Cannabis sativa HOM05D004955 ORTHO05D005965 2.1e-212 742.7 558 69.2
MBI04_g29834_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 4.8e-212 741.5 567 69.3
Aa31LG9G15390 Aethionema arabicum HOM05D004955 ORTHO05D005965 1.8e-211 739.6 563 67.9
AUR62001104 Chenopodium quinoa HOM05D004955 ORTHO05D005965 2.6e-210 735.7 568 68.1
Lsat_1_v5_gn_6_66461 Lactuca sativa HOM05D004955 ORTHO05D005965 2.2e-209 732.6 559 68.7
CARHR195050 Cardamine hirsuta HOM05D004955 ORTHO05D005965 4.2e-208 728.4 558 67.9
Manes.15G172800 Manihot esculenta HOM05D004955 ORTHO05D005965 2.1e-207 726.1 509 72.1
Nitab4.5_0006693g0050 Nicotiana tabacum HOM05D004955 ORTHO05D005965 4.6e-207 724.9 519 71.9
Actinidia25945 Actinidia chinensis HOM05D004955 ORTHO05D005965 1.0e-206 723.8 557 68.6
HanXRQChr14g0455871 Helianthus annuus HOM05D004955 ORTHO05D005965 1.0e-206 723.8 539 69.6
Thhalv10013080m.g Eutrema salsugineum HOM05D004955 ORTHO05D005965 3.0e-206 722.2 561 67.6
HPP92_017500 Vanilla planifolia HOM05D004955 ORTHO05D005965 3.3e-205 718.8 559 66.4
AL6G29260 Arabidopsis lyrata HOM05D004955 ORTHO05D005965 5.6e-205 718.0 561 67.2
ClCG03G017340 Citrullus lanatus HOM05D004955 ORTHO05D005965 9.6e-205 717.2 560 67.3
Carub.0006s1636 Capsella rubella HOM05D004955 ORTHO05D005965 1.3e-204 716.8 561 66.7
AT5G18070 Arabidopsis thaliana HOM05D004955 ORTHO05D005965 1.6e-204 716.5 561 66.1
ECA233G2813 Erigeron canadensis HOM05D004955 ORTHO05D005965 6.9e-203 711.1 560 65.2
Sp6g26230 Schrenkiella parvula HOM05D004955 ORTHO05D005965 2.0e-202 709.5 564 66.0
CSS0006893 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 3.8e-201 705.3 498 72.7
C09p58920 Brassica napus HOM05D004955 ORTHO05D005965 3.2e-200 702.2 557 64.6
BcaC04g18728 Brassica carinata HOM05D004955 ORTHO05D005965 2.7e-199 699.1 557 64.3
BraA10t44206Z Brassica rapa HOM05D004955 ORTHO05D005965 1.3e-198 696.8 557 64.1
ATR0829G014 Amborella trichopoda HOM05D004955 ORTHO05D005965 2.3e-198 696.0 559 64.9
PGSC0003DMG400024224 Solanum tuberosum HOM05D004955 ORTHO05D005965 5.1e-198 694.9 500 71.0
BolC9t58736H Brassica oleracea HOM05D004955 ORTHO05D005965 8.7e-198 694.1 557 64.3
A10p21440 Brassica napus HOM05D004955 ORTHO05D005965 7.4e-197 691.0 558 63.8
A03p08630 Brassica napus HOM05D004955 ORTHO05D005965 2.4e-195 686.0 556 64.7
BraA03t10187Z Brassica rapa HOM05D004955 ORTHO05D005965 1.9e-192 676.4 559 63.7
C03p10070 Brassica napus HOM05D004955 ORTHO05D005965 5.5e-192 674.9 559 63.9
BcaB01g05173 Brassica carinata HOM05D004955 ORTHO05D005965 2.1e-191 672.9 560 63.9
BolC3t13493H Brassica oleracea HOM05D004955 ORTHO05D005965 2.1e-191 672.9 560 63.9
SEGI_00537 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 1.8e-187 659.8 552 63.8
SGA_v2.0_scaffold18G08384 Striga asiatica HOM05D004955 ORTHO05D005965 2.4e-187 659.4 496 67.5
Zm00001eb119880 Zea mays HOM05D004955 ORTHO05D005965 2.2e-185 652.9 551 62.4
Os07g0195400 Oryza sativa ssp. japonica HOM05D004955 ORTHO05D005965 1.2e-183 647.1 537 60.7
unitig_21.g20378 Utricularia gibba HOM05D004955 ORTHO05D005965 2.7e-183 646.0 549 64.3
BcaB08g36711 Brassica carinata HOM05D004955 ORTHO05D005965 1.5e-170 603.6 559 58.9
Haze_08303 Corylus avellana HOM05D004955 ORTHO05D005965 1.0e-169 600.9 429 71.6
Haze_08299 Corylus avellana HOM05D004955 ORTHO05D005965 3.9e-166 589.0 508 63.0
SHI01417 Sapria himalayana HOM05D004955 ORTHO05D005965 4.2e-160 568.9 447 67.1
Glyma.01G201400 Glycine max HOM05D004955 ORTHO05D005965 5.2e-158 562.0 298 96.3
Pp3c15_140 Physcomitrium patens HOM05D004955 ORTHO05D005965 5.3e-155 552.0 565 54.2
Mapoly0074s0077 Marchantia polymorpha HOM05D004955 ORTHO05D005965 3.6e-151 539.3 564 53.2
AagrBONN_evm.TU.Sc2ySwM_362.507 Anthoceros agrestis HOM05D004955 ORTHO05D005965 1.8e-150 537.0 555 54.2
Dinv25184 Davidia involucrata HOM05D004955 ORTHO05D005965 6.8e-150 535.0 403 69.7
CBR_g36832 Chara braunii HOM05D004955 ORTHO05D005965 4.4e-149 532.3 571 52.4
SMO174G0171 Selaginella moellendorffii HOM05D004955 ORTHO05D005965 1.3e-145 520.8 547 54.1
SGA_v2.0_scaffold157G37418 Striga asiatica HOM05D004955 ORTHO05D005965 1.6e-143 513.8 458 59.8
CDE08G0647 Ceratophyllum demersum HOM05D004955 ORTHO05D005965 3.6e-143 512.7 404 64.4
Atru.chr6.1775 Acer truncatum HOM05D004955 ORTHO05D005965 8.3e-140 501.5 362 71.3
TPR.G6765 Trifolium pratense HOM05D004955 ORTHO05D005965 4.0e-126 456.1 569 50.1
Haze_08304 Corylus avellana HOM05D004955 ORTHO05D005965 4.0e-118 429.5 408 57.6
PRCOL_00000375 Prasinoderma coloniale HOM05D004955 ORTHO05D005965 1.7e-116 424.1 536 48.1
MCO08G085 Micromonas commoda HOM05D004955 ORTHO05D005965 3.0e-113 413.3 566 44.2
Glyma.16G093333 Glycine max HOM05D004955 ORTHO05D005965 1.3e-105 387.9 199 96.5
Cre08.g379700 Chlamydomonas reinhardtii HOM05D004955 ORTHO05D005965 3.6e-103 379.8 545 45.1
Nn3g19414 Nelumbo nucifera HOM05D004955 ORTHO05D005965 3.1e-102 376.7 280 68.2
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 1.6e-74 284.6 488 39.8
Glyma.16G093267 Glycine max HOM05D004955 ORTHO05D005965 9.0e-70 268.9 142 94.4
Glyma.01G201300 Glycine max HOM05D004955 ORTHO05D005965 9.7e-64 248.8 142 90.8
MD09G1284100 Malus domestica HOM05D004955 ORTHO05D005965 2.6e-61 240.7 379 41.4
Haze_26496 Corylus avellana HOM05D004955 ORTHO05D005965 4.7e-50 203.4 282 44.0
BcaB01g01790 Brassica carinata HOM05D004955 ORTHO05D005965 3.7e-39 167.2 147 56.5
Haze_08302 Corylus avellana HOM05D004955 ORTHO05D005965 8.3e-39 166.0 192 52.1
Cc05_g03290 Coffea canephora HOM05D004955 ORTHO05D005965 1.4e-38 165.2 107 72.9
SEGI_27182 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 2.2e-36 157.9 437 30.2
Glyma.16G093100 Glycine max HOM05D004955 ORTHO05D005965 5.5e-35 153.3 77 96.1
vmacro21667 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 1.4e-33 148.7 140 60.0
SHI01420 Sapria himalayana HOM05D004955 ORTHO05D000023 2.3e-33 147.9 107 67.3
BcaB01g06395 Brassica carinata HOM05D004955 ORTHO05D005965 3.1e-30 137.5 100 65.0
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.2e-24 119.0 131 50.4
CARHR185470 Cardamine hirsuta HOM05D004955 ORTHO05D005965 6.3e-23 113.2 85 63.5
Haze_08300 Corylus avellana HOM05D004955 ORTHO05D005965 3.1e-17 94.4 89 59.6
Ah.04g153990 Amaranthus hybridus HOM05D004955 ORTHO05D005965 3.4e-16 90.9 204 33.8
SEGI_05540 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 5.8e-16 90.1 74 60.8
ATR0149G020 Amborella trichopoda HOM05D004955 ORTHO05D005965 7.5e-16 89.7 87 55.2


User provided reference genes

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