Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 3.7e-137 491.5 240 100.0
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 3.8e-102 375.2 254 78.3
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 4.6e-87 325.1 228 73.2
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 3.2e-80 302.4 242 68.2
Lj5g0018140 Lotus japonicus HOM05D003268 ORTHO05D003719 2.0e-58 229.9 213 56.8
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 1.3e-52 210.7 197 54.3
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 2.8e-52 209.5 259 45.6
Lalb_Chr06g0167311 Lupinus albus HOM05D003268 ORTHO05D003719 9.0e-51 204.5 245 48.2
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 4.5e-50 202.2 253 45.1
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 1.4e-48 197.2 250 43.2
Lalb_Chr02g0147571 Lupinus albus HOM05D003268 ORTHO05D003719 3.0e-46 189.5 243 46.5
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 2.4e-40 169.9 224 46.0
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 3.2e-40 169.5 185 49.7
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 3.5e-39 166.0 181 49.2
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 1.6e-36 157.1 171 50.9
RcHm_v2.0_Chr3g0458411 Rosa chinensis HOM05D003268 ORTHO05D003719 4.0e-35 152.5 160 55.0
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 9.0e-35 151.4 171 50.3
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 1.2e-34 151.0 262 40.1
FvH4_6g08440 Fragaria vesca HOM05D003268 ORTHO05D003719 5.8e-34 148.7 161 55.3
FAN14G0797 Fragaria x ananassa HOM05D003268 ORTHO05D003719 5.8e-34 148.7 161 55.3
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 5.8e-34 148.7 227 41.0
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 7.6e-34 148.3 197 46.2
FAN02G3445 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.7e-33 147.1 177 50.3
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 2.2e-33 146.7 260 39.6
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 2.2e-33 146.7 260 39.6
Thecc.05G329300 Theobroma cacao HOM05D003268 ORTHO05D003719 6.5e-33 145.2 163 46.6
Duzib128G0788 Durio zibethinus HOM05D003268 ORTHO05D003719 8.4e-33 144.8 154 50.0
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 4.2e-32 142.5 166 49.4
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 1.6e-31 140.6 183 42.1
FAN09G1400 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.6e-31 140.6 158 53.8
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 7.9e-31 138.3 164 45.1
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 1.8e-30 137.1 165 47.9
COL.COLO4_05489 Corchorus olitorius HOM05D003268 ORTHO05D003719 6.7e-30 135.2 172 44.2
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 1.5e-29 134.0 179 44.1
Atru.chr12.1545 Acer truncatum HOM05D003268 ORTHO05D003719 7.4e-29 131.7 166 44.0
Gohir.D13G184200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.6e-28 130.6 160 43.8
Gorai.013G209800 Gossypium raimondii HOM05D003268 ORTHO05D003719 1.6e-28 130.6 160 43.8
Gohir.A13G177600 Gossypium hirsutum HOM05D003268 ORTHO05D003719 2.2e-28 130.2 175 41.7
THA.LOC104820490 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 3.7e-28 129.4 159 47.8
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 6.3e-28 128.6 202 41.1
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 9.0e-27 124.8 176 40.3
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 9.0e-27 124.8 192 40.6
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 1.2e-26 124.4 197 38.6
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 2.0e-26 123.6 183 41.0
CSS0047817 Camellia sinensis var. sinensis HOM05D003268 ORTHO05D003719 2.0e-26 123.6 176 42.6
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 3.4e-26 122.9 167 45.5
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 5.9e-26 122.1 175 43.4
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 5.9e-26 122.1 153 49.0
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 7.6e-26 121.7 159 43.4
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 1.7e-25 120.6 181 41.4
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 3.8e-25 119.4 187 37.4
Carub.0001s0886 Capsella rubella HOM05D003268 ORTHO05D003719 8.5e-25 118.2 169 42.0
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 1.1e-24 117.9 207 36.2
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.4e-24 117.5 189 40.2
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 1.4e-24 117.5 189 40.2
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.9e-24 117.1 197 36.0
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 1.9e-24 117.1 223 38.1
AL1G20040 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 2.5e-24 116.7 160 42.5
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 2.5e-24 116.7 200 40.0
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 2.5e-24 116.7 182 40.1
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 5.5e-24 115.5 189 39.7
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 5.5e-24 115.5 200 36.5
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 5.5e-24 115.5 200 36.5
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 1.2e-23 114.4 189 38.1
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 1.2e-23 114.4 181 40.3
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.6e-23 114.0 196 35.7
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 1.6e-23 114.0 189 38.1
TAR636G0250 Trochodendron aralioides HOM05D003268 ORTHO05D003719 1.6e-23 114.0 188 35.6
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 2.1e-23 113.6 189 38.6
C05p07520 Brassica napus HOM05D003268 ORTHO05D003719 2.7e-23 113.2 171 37.4
BolC5t29506H Brassica oleracea HOM05D003268 ORTHO05D003719 2.7e-23 113.2 171 37.4
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 2.7e-23 113.2 181 39.2
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 3.6e-23 112.8 164 40.9
A06p06210 Brassica napus HOM05D003268 ORTHO05D003719 4.6e-23 112.5 171 36.8
BraA06t23832Z Brassica rapa HOM05D003268 ORTHO05D003719 4.6e-23 112.5 171 36.8
Ciclev10013870m.g Citrus clementina HOM05D003268 ORTHO05D003719 6.1e-23 112.1 178 41.0
MBI19_g47476_MAGBIO Magnolia biondii HOM05D003268 ORTHO05D003719 7.9e-23 111.7 170 40.0
TAR633G0292 Trochodendron aralioides HOM05D003268 ORTHO05D003719 1.0e-22 111.3 184 34.8
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 1.8e-22 110.5 206 35.9
TAR362G1252 Trochodendron aralioides HOM05D003268 ORTHO05D003719 2.3e-22 110.2 186 36.6
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 3.0e-22 109.8 164 40.2
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 3.9e-22 109.4 181 39.8
vmacro01600 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 3.9e-22 109.4 169 41.4
Thhalv10008580m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 5.1e-22 109.0 186 38.7
MSTRG.20352 Avicennia marina HOM05D003268 ORTHO05D003719 1.1e-21 107.8 166 39.8
Sp1g08120 Schrenkiella parvula HOM05D003268 ORTHO05D003719 1.1e-21 107.8 158 39.2
C08p49440 Brassica napus HOM05D003268 ORTHO05D003719 1.5e-21 107.5 183 37.2
CARHR009490 Cardamine hirsuta HOM05D003268 ORTHO05D003719 2.5e-21 106.7 161 37.9
C08p12950 Brassica napus HOM05D003268 ORTHO05D003719 4.3e-21 105.9 197 36.0
A09p65470 Brassica napus HOM05D003268 ORTHO05D003719 5.7e-21 105.5 183 37.2
BraA09t41892Z Brassica rapa HOM05D003268 ORTHO05D003719 5.7e-21 105.5 183 37.2
A08p34520 Brassica napus HOM05D003268 ORTHO05D003719 7.4e-21 105.1 198 35.4
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 9.7e-21 104.8 197 35.0
A08p34530 Brassica napus HOM05D003268 ORTHO05D003719 2.8e-20 103.2 184 35.9
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 2.8e-20 103.2 165 38.2
AT1G09520 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 3.7e-20 102.8 160 40.0
BolC8t48925H Brassica oleracea HOM05D003268 ORTHO05D003719 3.7e-20 102.8 197 35.0
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 3.7e-20 102.8 170 39.4
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 4.8e-20 102.4 211 35.5
MD16G1136300 Malus domestica HOM05D003268 ORTHO05D003719 4.8e-20 102.4 170 41.2
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 6.3e-20 102.1 174 35.1
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 6.3e-20 102.1 169 36.1
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 6.3e-20 102.1 160 41.2
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 8.2e-20 101.7 191 36.6
SalBow5G1243 Salvia bowleyana HOM05D003268 ORTHO05D003719 1.1e-19 101.3 162 38.9
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 1.4e-19 100.9 170 34.7
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 1.8e-19 100.5 192 35.4
BraA08t35363Z Brassica rapa HOM05D003268 ORTHO05D003719 2.4e-19 100.1 194 34.5
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 2.4e-19 100.1 153 41.8
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 2.4e-19 100.1 186 38.7
Dinv29508 Davidia involucrata HOM05D003268 ORTHO05D003719 3.1e-19 99.8 194 38.1
BraA08t35364Z Brassica rapa HOM05D003268 ORTHO05D003719 5.3e-19 99.0 184 34.8
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 9.1e-19 98.2 178 39.3
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 1.5e-18 97.4 185 34.6
Migut.B00880 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.5e-18 97.4 191 35.1
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 1.5e-18 97.4 232 34.1
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 2.0e-18 97.1 172 37.2
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 2.0e-18 97.1 170 34.1
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 2.6e-18 96.7 170 37.6
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 2.6e-18 96.7 177 33.9
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 2.6e-18 96.7 186 38.2
BcaC07g38514 Brassica carinata HOM05D003268 ORTHO05D003719 3.4e-18 96.3 174 36.2
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 5.9e-18 95.5 163 39.3
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 5.9e-18 95.5 159 37.1
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 7.7e-18 95.1 167 38.9
Sabra08G0150300 Salix brachista HOM05D003268 ORTHO05D003719 1.0e-17 94.7 139 40.3
Prupe.1G105300 Prunus persica HOM05D003268 ORTHO05D003719 1.7e-17 94.0 136 40.4
TWI09G0361 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 1.7e-17 94.0 148 37.8
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 2.2e-17 93.6 190 33.2
DCAR_001893 Daucus carota HOM05D003268 ORTHO05D003719 3.8e-17 92.8 198 30.3
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 5.0e-17 92.4 179 36.3
Potri.008G206600 Populus trichocarpa HOM05D003268 ORTHO05D003719 5.0e-17 92.4 139 40.3
Ah.10g026900 Amaranthus hybridus HOM05D003268 ORTHO05D003719 6.5e-17 92.0 189 31.7
C08p00580 Brassica napus HOM05D003268 ORTHO05D003719 6.5e-17 92.0 159 37.7
Nitab4.5_0000039g0190 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.4e-16 90.9 180 36.1
Solyc03g114270.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.9e-16 90.5 156 35.9
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 1.9e-16 90.5 156 35.9
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 2.5e-16 90.1 161 35.4
Medtr4g124100 Medicago truncatula HOM05D003268 ORTHO05D003719 3.2e-16 89.7 176 35.2
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 5.5e-16 89.0 173 33.5
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 5.5e-16 89.0 159 35.2
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 7.2e-16 88.6 161 37.9
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 1.6e-15 87.4 167 37.7
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 1.6e-15 87.4 169 33.7
BolC8t52481H Brassica oleracea HOM05D003268 ORTHO05D003719 2.1e-15 87.0 160 34.4
PGSC0003DMG400024495 Solanum tuberosum HOM05D003268 ORTHO05D003719 2.1e-15 87.0 156 35.3
Migut.B00893 Erythranthe guttata HOM05D003268 ORTHO05D003719 4.7e-15 85.9 170 34.1
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 1.0e-14 84.7 191 34.6
Carub.0003s1718 Capsella rubella HOM05D003268 ORTHO05D003719 1.4e-14 84.3 175 31.4
FAN05G0723 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.8e-14 84.0 77 54.5
ECA234G2755 Erigeron canadensis HOM05D003268 ORTHO05D003719 3.0e-14 83.2 179 32.4
TPR.G12613 Trifolium pratense HOM05D003268 ORTHO05D003719 3.0e-14 83.2 143 36.4
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 3.9e-14 82.8 160 35.6
BcaC09g48702 Brassica carinata HOM05D003268 ORTHO05D003719 5.1e-14 82.4 152 35.5
C01p46780 Brassica napus HOM05D003268 ORTHO05D003719 5.1e-14 82.4 152 35.5
BolC1t04651H Brassica oleracea HOM05D003268 ORTHO05D003719 5.1e-14 82.4 152 35.5
Migut.O00762 Erythranthe guttata HOM05D003268 ORTHO05D003719 6.7e-14 82.0 175 33.7
Migut.N00971 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.1e-13 81.3 208 31.7
AL3G30540 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 1.5e-13 80.9 190 30.5
BcaC09g48706 Brassica carinata HOM05D003268 ORTHO05D003719 1.5e-13 80.9 156 35.3
BolC1t04640H Brassica oleracea HOM05D003268 ORTHO05D003719 1.5e-13 80.9 156 35.3
unitig_578.g15945 Utricularia gibba HOM05D003268 ORTHO05D003719 2.0e-13 80.5 96 40.6
Zm00001eb417400 Zea mays HOM05D003268 ORTHO05D003719 2.6e-13 80.1 167 35.3
BcaC07g38513 Brassica carinata HOM05D003268 ORTHO05D003719 3.3e-13 79.7 159 34.6
CARHR092780 Cardamine hirsuta HOM05D003268 ORTHO05D003719 9.7e-13 78.2 180 29.4
Psat0s1206g0240 Pisum sativum HOM05D003268 ORTHO05D003719 1.3e-12 77.8 143 35.0
AT3G17460 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 3.7e-12 76.3 180 30.0
Sed0001415 Sechium edule HOM05D003268 ORTHO05D003719 3.7e-12 76.3 199 30.7
Aqoxy5G02799 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 4.8e-12 75.9 184 33.7
Sp3g15630 Schrenkiella parvula HOM05D003268 ORTHO05D003719 1.1e-11 74.7 179 30.7
BraA01t03748Z Brassica rapa HOM05D003268 ORTHO05D003719 1.8e-11 73.9 165 31.5
MELO3C006751.2 Cucumis melo HOM05D003268 ORTHO05D003719 2.4e-11 73.6 171 31.0
HanXRQChr09g0248281 Helianthus annuus HOM05D003268 ORTHO05D003719 2.4e-11 73.6 245 29.0
A01p36890 Brassica napus HOM05D003268 ORTHO05D003719 3.1e-11 73.2 154 33.1
Thhalv10022081m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 3.1e-11 73.2 180 30.0
BcaC07g36965 Brassica carinata HOM05D003268 ORTHO05D003719 4.1e-11 72.8 123 36.6
C01p46720 Brassica napus HOM05D003268 ORTHO05D003719 4.1e-11 72.8 150 34.0
BcaB06g25842 Brassica carinata HOM05D003268 ORTHO05D003719 5.3e-11 72.4 147 34.7
Actinidia17741 Actinidia chinensis HOM05D003268 ORTHO05D003719 1.2e-10 71.2 114 37.7
BcaB04g20839 Brassica carinata HOM05D003268 ORTHO05D003719 7.7e-10 68.6 155 31.0
CsaV3_3G015530 Cucumis sativus L. HOM05D003268 ORTHO05D003719 1.3e-09 67.8 130 33.8
HanXRQChr10g0294291 Helianthus annuus HOM05D003268 ORTHO05D003719 1.3e-09 67.8 197 26.4
Os05g0277200 Oryza sativa ssp. japonica HOM05D003268 ORTHO05D003719 1.7e-09 67.4 194 32.0
Aa31LG1G5600 Aethionema arabicum HOM05D003268 ORTHO05D003719 2.9e-09 66.6 104 38.5
C05p48980 Brassica napus HOM05D003268 ORTHO05D003719 1.4e-08 64.3 186 29.0
BolC5t33638H Brassica oleracea HOM05D003268 ORTHO05D003719 1.4e-08 64.3 186 29.0
ECA236G0017 Erigeron canadensis HOM05D003268 ORTHO05D003719 1.9e-08 63.9 172 29.1
vmacro22837 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 6.7e-06 55.5 104 37.5
Dinv24510 Davidia involucrata HOM05D003268 ORTHO05D003719 8.8e-06 55.1 72 47.2


User provided reference genes

Program Settings