Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G091700 Glycine max HOM05D008018 ORTHO05D001531 5.0e-44 180.6 87 100.0
Glyma.20G091800 Glycine max HOM05D008018 ORTHO05D001531 5.2e-41 170.6 86 95.3
Glyma.10G143100 Glycine max HOM05D008018 ORTHO05D001531 4.9e-39 164.1 85 92.9
Glyma.20G091600 Glycine max HOM05D008018 ORTHO05D001531 4.9e-39 164.1 82 95.1
Phvul.007G205600 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 1.2e-37 159.5 87 89.7
Phvul.007G205400 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 1.6e-37 159.1 87 89.7
Glyma.10G143000 Glycine max HOM05D008018 ORTHO05D001531 1.3e-36 156.0 81 92.6
Phvul.007G205300 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 6.6e-36 153.7 87 87.4
Glyma.10G143200 Glycine max HOM05D008018 ORTHO05D001531 1.9e-35 152.1 83 89.2
VMungo0720G1916 Vigna mungo HOM05D008018 ORTHO05D001531 2.9e-31 138.3 75 88.0
Lalb_Chr21g0310041 Lupinus albus HOM05D008018 ORTHO05D001531 3.7e-23 111.3 83 65.1
Lalb_Chr02g0147521 Lupinus albus HOM05D008018 ORTHO05D001531 1.1e-22 109.8 83 65.1
Lj5g0000373 Lotus japonicus HOM05D008018 ORTHO05D001531 5.4e-22 107.5 90 63.3
Lj5g0007331 Lotus japonicus HOM05D008018 ORTHO05D001531 5.4e-22 107.5 90 63.3
Ca_10206_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 7.1e-22 107.1 84 66.7
Medtr1g484990 Medicago truncatula HOM05D008018 ORTHO05D001531 9.2e-22 106.7 88 62.5
Psat6g156960 Pisum sativum HOM05D008018 ORTHO05D001531 1.2e-21 106.3 82 68.3
TPR.G2624 Trifolium pratense HOM05D008018 ORTHO05D001531 3.5e-21 104.8 86 66.3
Psat6g154200 Pisum sativum HOM05D008018 ORTHO05D001531 6.0e-21 104.0 82 65.9
Psat6g154080 Pisum sativum HOM05D008018 ORTHO05D001531 7.8e-21 103.6 82 65.9
Medtr0187s0020 Medicago truncatula HOM05D008018 ORTHO05D001531 1.3e-20 102.8 82 63.4
Medtr1g084840 Medicago truncatula HOM05D008018 ORTHO05D001531 2.3e-20 102.1 82 63.4
Psat6g157040 Pisum sativum HOM05D008018 ORTHO05D001531 3.0e-20 101.7 81 64.2
Medtr1g485020 Medicago truncatula HOM05D008018 ORTHO05D001531 8.6e-20 100.1 84 61.9
Psat6g154160 Pisum sativum HOM05D008018 ORTHO05D001531 1.5e-19 99.4 81 64.2
TPR.G2630 Trifolium pratense HOM05D008018 ORTHO05D001531 1.5e-19 99.4 83 65.1
TPR.G18867 Trifolium pratense HOM05D008018 ORTHO05D001531 7.3e-19 97.1 82 64.6
Medtr0187s0050 Medicago truncatula HOM05D008018 ORTHO05D001531 1.2e-18 96.3 81 61.7
Medtr0187s0070 Medicago truncatula HOM05D008018 ORTHO05D001531 1.2e-18 96.3 81 61.7
Medtr1g084920 Medicago truncatula HOM05D008018 ORTHO05D001531 2.1e-18 95.5 82 62.2
Lalb_Chr06g0167281 Lupinus albus HOM05D008018 ORTHO05D001531 2.8e-18 95.1 83 57.8
Glyma.20G091900 Glycine max HOM05D008018 ORTHO05D001531 4.7e-18 94.4 83 60.2
Glyma.10G143300 Glycine max HOM05D008018 ORTHO05D001531 1.4e-17 92.8 84 58.3
Phvul.007G205200 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 1.4e-17 92.8 82 61.0
Psat6g154120 Pisum sativum HOM05D008018 ORTHO05D001531 3.1e-17 91.7 74 64.9
Ca_10202_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 2.0e-16 89.0 80 53.8
Ca_10203_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 2.0e-16 89.0 80 53.8
Ca_10204_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 3.4e-16 88.2 82 57.3
Psat3g015160 Pisum sativum HOM05D008018 ORTHO05D001531 7.6e-16 87.0 83 51.8
Psat6g153800 Pisum sativum HOM05D008018 ORTHO05D001531 9.9e-16 86.7 88 47.7
Lj5g0006453 Lotus japonicus HOM05D008018 ORTHO05D001531 2.9e-15 85.1 83 54.2
Lj5g0009947 Lotus japonicus HOM05D008018 ORTHO05D001531 2.9e-15 85.1 83 54.2
Psat6g154000 Pisum sativum HOM05D008018 ORTHO05D001531 2.9e-15 85.1 84 48.8
Psat6g154040 Pisum sativum HOM05D008018 ORTHO05D001531 3.8e-15 84.7 82 51.2
Lalb_Chr02g0147531 Lupinus albus HOM05D008018 ORTHO05D001531 4.9e-15 84.3 74 59.5
arahy.Tifrunner.gnm1.ann1.RMBA11 Arachis hypogaea HOM05D008018 ORTHO05D001531 8.4e-15 83.6 80 50.0
Lalb_Chr21g0310051 Lupinus albus HOM05D008018 ORTHO05D001531 8.4e-15 83.6 77 63.6
arahy.Tifrunner.gnm1.ann1.1WI4WZ Arachis hypogaea HOM05D008018 ORTHO05D001531 1.1e-14 83.2 80 50.0
Medtr0187s0030 Medicago truncatula HOM05D008018 ORTHO05D001531 3.2e-14 81.6 82 56.1
Medtr0187s0060 Medicago truncatula HOM05D008018 ORTHO05D001531 3.2e-14 81.6 82 56.1
Psat6g155760 Pisum sativum HOM05D008018 ORTHO05D001531 3.2e-14 81.6 82 48.8
Lalb_Chr06g0167291 Lupinus albus HOM05D008018 ORTHO05D001531 4.2e-14 81.3 80 52.5
Glyma.03G228000 Glycine max HOM05D008018 ORTHO05D001531 9.2e-14 80.1 83 50.6
Ca_10205_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 1.2e-13 79.7 83 51.8
Lj1g0006603 Lotus japonicus HOM05D008018 ORTHO05D001531 1.6e-13 79.3 83 49.4
Medtr7g111500 Medicago truncatula HOM05D008018 ORTHO05D001531 1.6e-13 79.3 75 50.7
Psat2g102520 Pisum sativum HOM05D008018 ORTHO05D001531 1.6e-13 79.3 80 50.0
Phvul.001G221900 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 3.5e-13 78.2 86 57.0
Glyma.19G225200 Glycine max HOM05D008018 ORTHO05D001531 6.0e-13 77.4 83 49.4
Psat2g102400 Pisum sativum HOM05D008018 ORTHO05D001531 1.0e-12 76.6 83 45.8
Psat2g102480 Pisum sativum HOM05D008018 ORTHO05D001531 1.0e-12 76.6 83 45.8
Psat6g153880 Pisum sativum HOM05D008018 ORTHO05D001531 1.7e-12 75.9 84 45.2
Psat2g102440 Pisum sativum HOM05D008018 ORTHO05D001531 3.9e-12 74.7 83 44.6
Medtr1g484970 Medicago truncatula HOM05D008018 ORTHO05D001531 8.7e-12 73.6 84 48.8
Medtr1g485000 Medicago truncatula HOM05D008018 ORTHO05D001531 8.7e-12 73.6 84 48.8
Medtr1g084830 Medicago truncatula HOM05D008018 ORTHO05D001531 1.1e-11 73.2 84 48.8
TPR.G17727 Trifolium pratense HOM05D008018 ORTHO05D001531 1.5e-11 72.8 82 54.9
Aqoxy5G02840 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 1.9e-11 72.4 78 59.0
Cpa.g.sc48.225 Carica papaya HOM05D002165 ORTHO05D001531 4.3e-11 71.2 80 60.0
arahy.Tifrunner.gnm1.ann1.NUY1UV Arachis hypogaea HOM05D008018 ORTHO05D001531 5.6e-11 70.9 71 50.7
Ciclev10013220m.g Citrus clementina HOM05D002165 ORTHO05D001531 9.6e-11 70.1 89 48.3
Atru.chr12.1534 Acer truncatum HOM05D002165 ORTHO05D001531 1.4e-09 66.2 86 50.0
Atru.chr12.1536 Acer truncatum HOM05D002165 ORTHO05D001531 1.4e-09 66.2 86 50.0
Ciclev10013801m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.4e-09 66.2 86 46.5
Ciclev10013222m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.8e-09 65.9 86 48.8
FAN02G1676 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.8e-09 65.9 89 48.3
FAN05G4164 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.8e-09 65.9 89 48.3
FAN09G0584 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.8e-09 65.9 89 48.3
Ciclev10013684m.g Citrus clementina HOM05D002165 ORTHO05D001531 2.4e-09 65.5 79 49.4
Eucgr.H01321 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.4e-09 65.5 77 50.6
Eucgr.H01327 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.1e-09 65.1 86 45.3
Eucgr.H01329 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.1e-09 65.1 86 45.3
Manes.08G107400 Manihot esculenta HOM05D002165 ORTHO05D001531 4.0e-09 64.7 87 49.4
TAR362G0276 Trochodendron aralioides HOM05D002165 ORTHO05D001531 4.0e-09 64.7 77 51.9
TAR633G1086 Trochodendron aralioides HOM05D002165 ORTHO05D001531 4.0e-09 64.7 73 57.5
arahy.Tifrunner.gnm1.ann1.R57IYC Arachis hypogaea HOM05D008018 ORTHO05D001531 5.3e-09 64.3 76 51.3
Gohir.D13G184400 Gossypium hirsutum HOM05D002165 ORTHO05D001531 5.3e-09 64.3 82 46.3
Gorai.013G210100 Gossypium raimondii HOM05D002165 ORTHO05D001531 5.3e-09 64.3 82 46.3
Haze_03985 Corylus avellana HOM05D016210 ORTHO05D001531 9.0e-09 63.5 68 52.9
MD04G1186400 Malus domestica HOM05D002165 ORTHO05D001531 9.0e-09 63.5 76 53.9
Medtr0187s0080 Medicago truncatula HOM05D008018 ORTHO05D001531 9.0e-09 63.5 70 47.1
Medtr1g084900 Medicago truncatula HOM05D008018 ORTHO05D001531 9.0e-09 63.5 70 47.1
Eucgr.H01332 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.2e-08 63.2 92 45.7
FvH4_6g08530 Fragaria vesca HOM05D002165 ORTHO05D001531 1.2e-08 63.2 89 47.2
FAN14G5435 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.2e-08 63.2 89 47.2
Gohir.A13G177800 Gossypium hirsutum HOM05D002165 ORTHO05D001531 1.2e-08 63.2 82 46.3
Thecc.09G084900 Theobroma cacao HOM05D002165 ORTHO05D001531 1.2e-08 63.2 82 51.2
Cfa006774 Carpinus fangiana HOM05D016210 ORTHO05D001531 1.5e-08 62.8 83 47.0
Nn3g21955 Nelumbo nucifera HOM05D002165 ORTHO05D001531 1.5e-08 62.8 71 53.5
Cfa006773 Carpinus fangiana HOM05D016210 ORTHO05D001531 2.0e-08 62.4 83 48.2
Phvul.001G221800 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 2.0e-08 62.4 65 52.3
Cfa006772 Carpinus fangiana HOM05D016210 ORTHO05D001531 4.4e-08 61.2 69 50.7
Sed0010612 Sechium edule HOM05D008018 ORTHO05D001531 4.4e-08 61.2 72 44.4
Prupe.6G304300 Prunus persica HOM05D002165 ORTHO05D001531 5.8e-08 60.8 78 50.0
VMungo1383G2747 Vigna mungo HOM05D008018 ORTHO05D001531 5.8e-08 60.8 68 48.5
Oeu000103.1 Olea europaea HOM05D008018 ORTHO05D001531 9.9e-08 60.1 72 50.0
Aa31LG5G16230 Aethionema arabicum HOM05D002165 ORTHO05D001531 1.3e-07 59.7 88 46.6
Ciclev10010714m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.7e-07 59.3 79 51.9
Eucgr.H01326 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.2e-07 58.9 77 46.8
Eucgr.H01331 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.2e-07 58.9 84 46.4
Sed0018337 Sechium edule HOM05D002165 ORTHO05D001531 2.2e-07 58.9 64 50.0
Eucgr.H01325 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.9e-07 58.5 77 46.8
GSVIVG01017705001 Vitis vinifera HOM05D002165 ORTHO05D001531 2.9e-07 58.5 77 50.6
GSVIVG01017706001 Vitis vinifera HOM05D002165 ORTHO05D001531 2.9e-07 58.5 77 50.6
Sed0002745 Sechium edule HOM05D002165 ORTHO05D001531 3.8e-07 58.2 72 45.8
Prupe.6G304200 Prunus persica HOM05D002165 ORTHO05D001531 4.9e-07 57.8 78 51.3
Eucgr.H01330 Eucalyptus grandis HOM05D002165 ORTHO05D001531 6.4e-07 57.4 77 46.8
Oeu062790.1 Olea europaea HOM05D002165 ORTHO05D001531 6.4e-07 57.4 72 47.2
GSVIVG01017704001 Vitis vinifera HOM05D002165 ORTHO05D001531 6.4e-07 57.4 77 49.4
Aqoxy2G02476 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 8.4e-07 57.0 78 47.4
Eucgr.H01328 Eucalyptus grandis HOM05D002165 ORTHO05D001531 8.4e-07 57.0 77 46.8
Eucgr.H01334 Eucalyptus grandis HOM05D002165 ORTHO05D001531 8.4e-07 57.0 81 44.4
Gohir.A09G242300 Gossypium hirsutum HOM05D002165 ORTHO05D001531 8.4e-07 57.0 71 49.3
TWI12G1307 Tripterygium wilfordii HOM05D002165 ORTHO05D001531 8.4e-07 57.0 89 49.4
MELO3C004151.2 Cucumis melo HOM05D002165 ORTHO05D001531 1.1e-06 56.6 72 45.8
DCAR_001884 Daucus carota HOM05D002165 ORTHO05D001531 1.1e-06 56.6 74 52.7
BcaNung06223 Brassica carinata HOM05D002165 ORTHO05D001531 1.4e-06 56.2 88 45.5
A02p39040 Brassica napus HOM05D002165 ORTHO05D001531 1.4e-06 56.2 88 45.5
C02p58650 Brassica napus HOM05D002165 ORTHO05D001531 1.4e-06 56.2 88 45.5
BolC2t11925H Brassica oleracea HOM05D002165 ORTHO05D001531 1.4e-06 56.2 88 45.5
BraA02t08873Z Brassica rapa HOM05D002165 ORTHO05D001531 1.4e-06 56.2 88 45.5
Gohir.D09G243000 Gossypium hirsutum HOM05D002165 ORTHO05D001531 1.4e-06 56.2 71 47.9
Gorai.006G266800 Gossypium raimondii HOM05D002165 ORTHO05D001531 1.4e-06 56.2 71 47.9
BcaNung03681 Brassica carinata HOM05D002165 ORTHO05D001531 1.9e-06 55.8 88 45.5
C07p41550 Brassica napus HOM05D002165 ORTHO05D001531 1.9e-06 55.8 88 45.5
BolC7t44687H Brassica oleracea HOM05D002165 ORTHO05D001531 1.9e-06 55.8 88 45.5
Ciclev10006471m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.9e-06 55.8 81 50.6
COL.COLO4_05484 Corchorus olitorius HOM05D002165 ORTHO05D001531 1.9e-06 55.8 85 48.2
RcHm_v2.0_Chr1g0321401 Rosa chinensis HOM05D002165 ORTHO05D001531 1.9e-06 55.8 85 44.7
BcaB07g29941 Brassica carinata HOM05D002165 ORTHO05D001531 2.4e-06 55.5 88 45.5
Migut.B00883 Erythranthe guttata HOM05D002165 ORTHO05D001531 2.4e-06 55.5 71 49.3
Eucgr.H01323 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.4e-06 55.5 57 50.9
PSO761G0534 Papaver somniferum HOM05D002165 ORTHO05D001531 2.4e-06 55.5 84 45.2
BcaC01g04301 Brassica carinata HOM05D002165 ORTHO05D001531 3.2e-06 55.1 88 48.9
C03p41790 Brassica napus HOM05D002165 ORTHO05D001531 3.2e-06 55.1 88 48.9
BolC3t16462H Brassica oleracea HOM05D002165 ORTHO05D001531 3.2e-06 55.1 88 48.9
DCAR_001886 Daucus carota HOM05D002165 ORTHO05D001531 3.2e-06 55.1 72 47.2
BcaNung03907 Brassica carinata HOM05D002165 ORTHO05D001531 5.4e-06 54.3 88 44.3
A06p36950 Brassica napus HOM05D002165 ORTHO05D001531 5.4e-06 54.3 88 44.3
BraA06t26620Z Brassica rapa HOM05D002165 ORTHO05D001531 5.4e-06 54.3 88 44.3
CARHR186860 Cardamine hirsuta HOM05D002165 ORTHO05D001531 5.4e-06 54.3 88 43.2
CsaV3_6G002670 Cucumis sativus L. HOM05D002165 ORTHO05D001531 5.4e-06 54.3 83 42.2
Migut.N00975 Erythranthe guttata HOM05D002165 ORTHO05D001531 5.4e-06 54.3 69 50.7
Eucgr.H01322 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.4e-06 54.3 67 44.8
Eucgr.L03553 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.4e-06 54.3 67 44.8
DCAR_001885 Daucus carota HOM05D002165 ORTHO05D001531 7.1e-06 53.9 73 49.3
AT3G05858 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 9.3e-06 53.5 86 44.2
BcaB04g19240 Brassica carinata HOM05D002165 ORTHO05D001531 9.3e-06 53.5 88 47.7
BcaC03g17834 Brassica carinata HOM05D002165 ORTHO05D001531 9.3e-06 53.5 81 46.9
A03p34320 Brassica napus HOM05D002165 ORTHO05D001531 9.3e-06 53.5 88 47.7
BraA03t12608Z Brassica rapa HOM05D002165 ORTHO05D001531 9.3e-06 53.5 88 47.7
Carub.0006s2437 Capsella rubella HOM05D002165 ORTHO05D001531 9.3e-06 53.5 88 43.2
MELO3C025018.2 Cucumis melo HOM05D002165 ORTHO05D001531 9.3e-06 53.5 83 44.6
CsaV3_6G002630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 9.3e-06 53.5 83 43.4
Thhalv10021847m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 9.3e-06 53.5 88 47.7
QL03p011013 Quercus lobata HOM05D016210 ORTHO05D001531 9.3e-06 53.5 66 39.4
RcHm_v2.0_Chr3g0458591 Rosa chinensis HOM05D002165 ORTHO05D001531 9.3e-06 53.5 90 46.7
Sp3g04720 Schrenkiella parvula HOM05D002165 ORTHO05D001531 9.3e-06 53.5 88 46.6


User provided reference genes

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