Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G087400 Glycine max HOM05D001991 ORTHO05D002030 1.1e-87 326.6 166 100.0
Glyma.08G131600 Glycine max HOM05D001991 ORTHO05D002030 1.7e-24 116.7 116 58.6
Glyma.05G174400 Glycine max HOM05D001991 ORTHO05D002030 6.5e-24 114.8 116 57.8
VMungo0251G2038 Vigna mungo HOM05D001991 ORTHO05D002030 2.5e-23 112.8 125 54.4
Phvul.002G259400 Phaseolus vulgaris HOM05D001991 ORTHO05D002030 3.5e-22 109.0 134 52.2
Prupe.1G246800 Prunus persica HOM05D001991 ORTHO05D002030 4.5e-17 92.0 147 44.9
MD16G1099600 Malus domestica HOM05D001991 ORTHO05D002030 2.2e-16 89.7 154 42.9
Psat7g059440 Pisum sativum HOM05D001991 ORTHO05D002030 5.0e-16 88.6 139 43.2
MD13G1098600 Malus domestica HOM05D001991 ORTHO05D002030 8.5e-16 87.8 149 41.6
arahy.Tifrunner.gnm1.ann1.FAC3HW Arachis hypogaea HOM05D001991 ORTHO05D002030 1.1e-15 87.4 117 45.3
arahy.Tifrunner.gnm1.ann1.YC9QB8 Arachis hypogaea HOM05D001991 ORTHO05D002030 1.1e-15 87.4 117 45.3
Cpa.g.sc33.43 Carica papaya HOM05D001991 ORTHO05D002030 1.9e-15 86.7 125 45.6
TWI75G1322 Tripterygium wilfordii HOM05D001991 ORTHO05D002030 1.9e-15 86.7 130 45.4
Medtr8g089785 Medicago truncatula HOM05D001991 ORTHO05D002030 4.2e-15 85.5 129 42.6
RcHm_v2.0_Chr4g0433421 Rosa chinensis HOM05D001991 ORTHO05D002030 4.2e-15 85.5 139 46.0
FAN22G0770 Fragaria x ananassa HOM05D001991 ORTHO05D002030 7.2e-15 84.7 137 43.1
Haze_12267 Corylus avellana HOM05D001991 ORTHO05D002030 9.4e-15 84.3 124 46.0
Lj4g0004810 Lotus japonicus HOM05D001991 ORTHO05D002030 3.6e-14 82.4 134 46.3
Manes.13G022300 Manihot esculenta HOM05D001991 ORTHO05D002030 3.6e-14 82.4 123 44.7
Cfa009231 Carpinus fangiana HOM05D001991 ORTHO05D000198 6.1e-14 81.6 122 45.1
FAN07G0001 Fragaria x ananassa HOM05D001991 ORTHO05D002030 7.9e-14 81.3 136 43.4
Lalb_Chr12g0204031 Lupinus albus HOM05D001991 ORTHO05D002030 1.0e-13 80.9 137 46.0
FvH4_4g26000 Fragaria vesca HOM05D001991 ORTHO05D002030 1.4e-13 80.5 144 42.4
FAN12G2989 Fragaria x ananassa HOM05D001991 ORTHO05D002030 1.4e-13 80.5 144 42.4
FAN12G4314 Fragaria x ananassa HOM05D001991 ORTHO05D002030 1.4e-13 80.5 144 42.4
MBI10_g31499_MAGBIO Magnolia biondii HOM05D001991 ORTHO05D002030 1.8e-13 80.1 125 43.2
Dinv14734 Davidia involucrata HOM05D001991 ORTHO05D002030 3.0e-13 79.3 128 43.8
Gohir.D01G151800 Gossypium hirsutum HOM05D001991 ORTHO05D002030 3.0e-13 79.3 132 43.9
Gorai.002G188100 Gossypium raimondii HOM05D001991 ORTHO05D002030 3.0e-13 79.3 132 43.9
TWI18G0479 Tripterygium wilfordii HOM05D001991 ORTHO05D002030 3.0e-13 79.3 129 45.0
Aa31LG2G6130 Aethionema arabicum HOM05D001991 ORTHO05D002030 3.9e-13 79.0 136 42.6
Ca_17780_v3 Cicer arietinum L. HOM05D001991 ORTHO05D002030 3.9e-13 79.0 129 41.1
Hma1.2p1_0079F.1_g041070 Hydrangea macrophylla HOM05D001991 ORTHO05D002030 5.1e-13 78.6 162 38.9
Manes.12G021400 Manihot esculenta HOM05D001991 ORTHO05D002030 5.1e-13 78.6 124 43.5
THA.LOC104824007 Tarenaya hassleriana HOM05D001991 ORTHO05D002030 6.7e-13 78.2 137 39.4
FAN17G1615 Fragaria x ananassa HOM05D001991 ORTHO05D002030 1.1e-12 77.4 143 42.0
Lalb_Chr13g0295851 Lupinus albus HOM05D001991 ORTHO05D002030 1.1e-12 77.4 139 47.5
ClCG08G017650 Citrullus lanatus HOM05D001991 ORTHO05D002030 2.0e-12 76.6 123 41.5
Gohir.A01G163000 Gossypium hirsutum HOM05D001991 ORTHO05D002030 2.5e-12 76.3 133 42.9
Carub.0001s1277 Capsella rubella HOM05D001991 ORTHO05D002030 3.3e-12 75.9 128 39.8
TPR.G6216 Trifolium pratense HOM05D001991 ORTHO05D002030 3.3e-12 75.9 122 42.6
THA.LOC104825667 Tarenaya hassleriana HOM05D001991 ORTHO05D002030 4.3e-12 75.5 138 40.6
CiPaw.06G066600 Carya illinoinensis HOM05D001991 ORTHO05D002030 5.7e-12 75.1 126 42.1
Ciclev10031235m.g Citrus clementina HOM05D001991 ORTHO05D002030 5.7e-12 75.1 132 41.7
CiPaw.05G179600 Carya illinoinensis HOM05D001991 ORTHO05D002030 7.4e-12 74.7 121 42.1
Duzib268G1304 Durio zibethinus HOM05D001991 ORTHO05D002030 7.4e-12 74.7 132 40.9
Nn3g16681 Nelumbo nucifera HOM05D001991 ORTHO05D002030 7.4e-12 74.7 155 38.7
TAR629G2755 Trochodendron aralioides HOM05D001991 ORTHO05D002030 7.4e-12 74.7 127 40.9
Atru.chr11.2159 Acer truncatum HOM05D001991 ORTHO05D002030 9.7e-12 74.3 120 43.3
CsaV3_2G024990 Cucumis sativus L. HOM05D001991 ORTHO05D002030 9.7e-12 74.3 121 40.5
TWI36G0509 Tripterygium wilfordii HOM05D001991 ORTHO05D002030 1.3e-11 73.9 149 40.3
THA.LOC104805280 Tarenaya hassleriana HOM05D001991 ORTHO05D002030 1.7e-11 73.6 142 41.5
Duzib248G0408 Durio zibethinus HOM05D001991 ORTHO05D002030 2.2e-11 73.2 129 41.9
Thecc.02G262800 Theobroma cacao HOM05D001991 ORTHO05D002030 2.8e-11 72.8 124 42.7
Eucgr.B03270 Eucalyptus grandis HOM05D001991 ORTHO05D002030 3.7e-11 72.4 131 39.7
Lsat_1_v5_gn_8_152681 Lactuca sativa HOM05D001991 ORTHO05D002030 3.7e-11 72.4 150 38.0
PGR119G1839 Punica granatum HOM05D001991 ORTHO05D002030 3.7e-11 72.4 117 46.2
TAR622G0091 Trochodendron aralioides HOM05D001991 ORTHO05D002030 4.8e-11 72.0 122 41.8
Lalb_Chr07g0185411 Lupinus albus HOM05D001991 ORTHO05D002030 6.3e-11 71.6 135 43.0
CSS0025753 Camellia sinensis var. sinensis HOM05D001991 ORTHO05D002030 1.1e-10 70.9 127 44.1
Nitab4.5_0000229g0070 Nicotiana tabacum HOM05D001991 ORTHO05D002030 1.4e-10 70.5 132 39.4
Nitab4.5_0002653g0010 Nicotiana tabacum HOM05D001991 ORTHO05D002030 1.4e-10 70.5 132 39.4
Aqoxy5G03723 Aquilegia oxysepala HOM05D001991 ORTHO05D002030 1.8e-10 70.1 95 46.3
Sp1g11570 Schrenkiella parvula HOM05D001991 ORTHO05D002030 1.8e-10 70.1 134 38.1
PGSC0003DMG400018596 Solanum tuberosum HOM05D001991 ORTHO05D002030 1.8e-10 70.1 131 39.7
Aqoxy5G03724 Aquilegia oxysepala HOM05D001991 ORTHO05D002030 3.1e-10 69.3 100 44.0
Solyc05g013700.4 Solanum lycopersicum HOM05D001991 ORTHO05D002030 3.1e-10 69.3 131 40.5
Sopen05g008610 Solanum pennellii HOM05D001991 ORTHO05D002030 3.1e-10 69.3 131 40.5
Duzib251G0379 Durio zibethinus HOM05D001991 ORTHO05D002030 4.1e-10 68.9 133 40.6
Gohir.A03G133200 Gossypium hirsutum HOM05D001991 ORTHO05D002030 6.9e-10 68.2 133 39.8
Lsat_1_v5_gn_4_3980 Lactuca sativa HOM05D001991 ORTHO05D002030 6.9e-10 68.2 155 33.5
PGR102G1816 Punica granatum HOM05D001991 ORTHO05D002030 9.1e-10 67.8 71 53.5
QL03p057223 Quercus lobata HOM05D001991 ORTHO05D002030 9.1e-10 67.8 128 39.1
arahy.Tifrunner.gnm1.ann1.R6BV62 Arachis hypogaea HOM05D001991 ORTHO05D002030 1.2e-09 67.4 125 42.4
CANSAT01G2806 Cannabis sativa HOM05D001991 ORTHO05D002030 1.2e-09 67.4 124 40.3
PSO063G3998 Papaver somniferum HOM05D001991 ORTHO05D002030 1.2e-09 67.4 121 38.8
Dinv15212 Davidia involucrata HOM05D001991 ORTHO05D002030 2.6e-09 66.2 116 40.5
Gohir.D02G157500 Gossypium hirsutum HOM05D001991 ORTHO05D002030 2.6e-09 66.2 129 39.5
Gorai.005G176700 Gossypium raimondii HOM05D001991 ORTHO05D002030 2.6e-09 66.2 129 39.5
PSO754G0066 Papaver somniferum HOM05D001991 ORTHO05D002030 2.6e-09 66.2 121 38.0
Thhalv10007279m.g Eutrema salsugineum HOM05D001991 ORTHO05D002030 4.5e-09 65.5 74 52.7
Nn4g22575 Nelumbo nucifera HOM05D001991 ORTHO05D002030 4.5e-09 65.5 125 40.0
TAR374G1687 Trochodendron aralioides HOM05D000273 ORTHO05D000198 4.5e-09 65.5 114 41.2
AT1G13020 Arabidopsis thaliana HOM05D001991 ORTHO05D002030 5.9e-09 65.1 71 52.1
arahy.Tifrunner.gnm1.ann1.2WLS1Y Arachis hypogaea HOM05D001991 ORTHO05D002030 5.9e-09 65.1 125 41.6
CARHR013350 Cardamine hirsuta HOM05D001991 ORTHO05D002030 5.9e-09 65.1 129 36.4
Aa31LG1G1780 Aethionema arabicum HOM05D001991 ORTHO05D002030 1.0e-08 64.3 135 34.8
AL1G24670 Arabidopsis lyrata HOM05D001991 ORTHO05D002030 1.0e-08 64.3 132 37.1
ECA233G4229 Erigeron canadensis HOM05D003359 ORTHO05D004472 1.0e-08 64.3 122 40.2
C08p46930 Brassica napus HOM05D001991 ORTHO05D002030 2.2e-08 63.2 71 49.3
BolC8t52231H Brassica oleracea HOM05D001991 ORTHO05D002030 2.2e-08 63.2 71 49.3
A02p34560 Brassica napus HOM05D001991 ORTHO05D002030 2.9e-08 62.8 72 47.2
HanXRQChr12g0371941 Helianthus annuus HOM05D001991 ORTHO05D002030 2.9e-08 62.8 151 37.1
A09p63480 Brassica napus HOM05D001991 ORTHO05D002030 3.8e-08 62.4 118 33.9
BraA09t41698Z Brassica rapa HOM05D001991 ORTHO05D002030 3.8e-08 62.4 118 33.9
Hma1.2p1_0815F.1_g222670 Hydrangea macrophylla HOM05D001991 ORTHO05D002030 3.8e-08 62.4 117 41.9
Cpa.g.sc37.183 Carica papaya HOM05D001991 ORTHO05D002030 6.5e-08 61.6 122 37.7
MSTRG.558 Avicennia marina HOM05D001991 ORTHO05D002030 1.1e-07 60.8 123 38.2
Thhalv10003946m.g Eutrema salsugineum HOM05D001991 ORTHO05D002030 1.1e-07 60.8 74 50.0
MELO3C010696.2 Cucumis melo HOM05D001991 ORTHO05D002030 1.9e-07 60.1 100 40.0
Sp2g15550 Schrenkiella parvula HOM05D001991 ORTHO05D002030 1.9e-07 60.1 75 52.0
TAR371G0096 Trochodendron aralioides HOM05D001991 ORTHO05D002030 1.9e-07 60.1 156 35.3
vmacro16182 Vaccinium macrocarpon HOM05D001991 ORTHO05D002030 1.9e-07 60.1 121 39.7
Peaxi162Scf00128g00454 Petunia axillaris HOM05D001991 ORTHO05D002030 2.5e-07 59.7 103 42.7
A06p42040 Brassica napus HOM05D001991 ORTHO05D002030 3.2e-07 59.3 73 53.4
Cc02_g16460 Coffea canephora HOM05D001991 ORTHO05D002030 4.2e-07 58.9 79 43.0
Migut.K00613 Erythranthe guttata HOM05D001991 ORTHO05D002030 4.2e-07 58.9 115 39.1
Carub.0005s0437 Capsella rubella HOM05D001991 ORTHO05D002030 5.5e-07 58.5 75 46.7
BcaNung06887 Brassica carinata HOM05D001991 ORTHO05D002030 7.2e-07 58.2 73 53.4
C07p35440 Brassica napus HOM05D001991 ORTHO05D002030 7.2e-07 58.2 73 53.4
BolC7t44068H Brassica oleracea HOM05D001991 ORTHO05D002030 7.2e-07 58.2 73 53.4
BraA06t27121Z Brassica rapa HOM05D001991 ORTHO05D002030 7.2e-07 58.2 73 53.4
unitig_21.g20015 Utricularia gibba HOM05D001991 ORTHO05D002030 7.2e-07 58.2 70 41.4
BcaC03g17339 Brassica carinata HOM05D001991 ORTHO05D002030 9.4e-07 57.8 133 36.8
C02p53040 Brassica napus HOM05D001991 ORTHO05D002030 9.4e-07 57.8 133 36.8
Potri.010G048200 Populus trichocarpa HOM05D001991 ORTHO05D002030 9.4e-07 57.8 67 56.7
SalBow8G0331 Salvia bowleyana HOM05D001991 ORTHO05D002030 9.4e-07 57.8 107 40.2
Sed0007163 Sechium edule HOM05D001991 ORTHO05D002030 9.4e-07 57.8 68 47.1
vmacro01119 Vaccinium macrocarpon HOM05D001991 ORTHO05D002030 9.4e-07 57.8 110 40.9
HPP92_024687 Vanilla planifolia HOM05D001991 ORTHO05D002030 9.4e-07 57.8 74 44.6
BcaB08g34234 Brassica carinata HOM05D001991 ORTHO05D002030 1.6e-06 57.0 72 45.8
COL.COLO4_17265 Corchorus olitorius HOM05D001991 ORTHO05D002030 1.6e-06 57.0 86 43.0
Sabra10G0020600 Salix brachista HOM05D001991 ORTHO05D002030 1.6e-06 57.0 67 55.2
unitig_52.g17179 Utricularia gibba HOM05D001991 ORTHO05D002030 1.6e-06 57.0 75 46.7
unitig_578.g16748 Utricularia gibba HOM05D001991 ORTHO05D002030 2.1e-06 56.6 88 36.4
Ah.03g133340 Amaranthus hybridus HOM05D001991 ORTHO05D002030 2.7e-06 56.2 75 41.3
MSTRG.7948 Avicennia marina HOM05D001991 ORTHO05D002030 2.7e-06 56.2 115 38.3
BraA02t08464Z Brassica rapa HOM05D003359 ORTHO05D004472 2.7e-06 56.2 73 52.1
AUR62005498 Chenopodium quinoa HOM05D001991 ORTHO05D002030 2.7e-06 56.2 75 48.0
AUR62024243 Chenopodium quinoa HOM05D001991 ORTHO05D002030 2.7e-06 56.2 75 48.0
Gohir.D04G164600 Gossypium hirsutum HOM05D001991 ORTHO05D002030 2.7e-06 56.2 63 44.4
C08p15780 Brassica napus HOM05D001991 ORTHO05D002030 4.7e-06 55.5 72 48.6
BolC8t49204H Brassica oleracea HOM05D001991 ORTHO05D002030 4.7e-06 55.5 72 48.6
Gorai.012G153000 Gossypium raimondii HOM05D001991 ORTHO05D002030 4.7e-06 55.5 63 42.9
Nn5g29104 Nelumbo nucifera HOM05D001991 ORTHO05D002030 4.7e-06 55.5 68 42.6
CARHR147420 Cardamine hirsuta HOM05D001991 ORTHO05D002030 6.1e-06 55.1 65 53.8
Cc11_g15900 Coffea canephora HOM05D001991 ORTHO05D002030 6.1e-06 55.1 125 39.2
COL.COLO4_23473 Corchorus olitorius HOM05D001991 ORTHO05D002030 6.1e-06 55.1 110 40.0
A08p32510 Brassica napus HOM05D001991 ORTHO05D002030 7.9e-06 54.7 74 45.9
BraA08t35175Z Brassica rapa HOM05D001991 ORTHO05D002030 7.9e-06 54.7 74 45.9
CDE09G0346 Ceratophyllum demersum HOM05D000273 ORTHO05D000198 7.9e-06 54.7 82 42.7
SGA_v2.0_scaffold63G21739 Striga asiatica HOM05D001991 ORTHO05D002030 7.9e-06 54.7 123 35.8


User provided reference genes

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