Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 4.0e-66 254.6 127 100.0
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 7.5e-65 250.4 127 97.6
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 9.9e-65 250.0 127 98.4
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 2.2e-64 248.8 127 96.1
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 1.1e-60 236.5 128 91.4
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 3.3e-60 235.0 128 92.2
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 4.3e-60 234.6 127 91.3
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 3.6e-59 231.5 127 90.6
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 1.3e-56 223.0 127 89.8
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 6.4e-56 220.7 127 85.8
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 6.4e-56 220.7 127 85.8
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 3.2e-55 218.4 128 87.5
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 1.1e-52 209.9 127 85.0
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 1.9e-52 209.1 130 83.1
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 3.3e-52 208.4 131 80.9
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.2e-51 206.5 130 82.3
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 2.1e-51 205.7 127 82.7
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 2.8e-51 205.3 130 80.0
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 3.6e-51 204.9 127 82.7
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 4.7e-51 204.5 129 82.9
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 8.1e-51 203.8 127 81.9
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 1.1e-50 203.4 130 80.8
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 1.1e-50 203.4 129 79.1
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.8e-50 202.6 132 80.3
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 1.8e-50 202.6 130 79.2
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 1.8e-50 202.6 134 79.1
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 9.0e-50 200.3 130 80.8
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 3.4e-49 198.4 127 79.5
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 4.4e-49 198.0 127 79.5
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 4.4e-49 198.0 130 78.5
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 5.8e-49 197.6 128 79.7
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 5.8e-49 197.6 128 79.7
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 5.8e-49 197.6 130 77.7
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 5.8e-49 197.6 130 77.7
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.9e-48 195.3 132 77.3
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 8.4e-48 193.7 130 80.0
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 8.4e-48 193.7 131 77.1
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 1.1e-47 193.4 129 80.6
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 1.4e-47 193.0 129 76.7
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 2.4e-47 192.2 133 77.4
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 2.4e-47 192.2 130 78.5
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 2.4e-47 192.2 130 78.5
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 4.2e-47 191.4 133 78.2
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 4.2e-47 191.4 130 78.5
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 4.2e-47 191.4 130 78.5
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 4.2e-47 191.4 132 80.3
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 5.4e-47 191.0 129 79.8
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 9.3e-47 190.3 127 75.6
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 9.3e-47 190.3 133 76.7
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.2e-46 189.9 127 75.6
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 1.6e-46 189.5 130 74.6
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 1.6e-46 189.5 127 78.7
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 1.6e-46 189.5 127 78.7
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 2.1e-46 189.1 128 79.7
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 2.1e-46 189.1 130 76.9
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 2.7e-46 188.7 130 77.7
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 3.5e-46 188.3 130 76.2
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 3.5e-46 188.3 130 73.8
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 3.5e-46 188.3 132 78.8
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 3.5e-46 188.3 127 78.0
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 4.6e-46 188.0 130 73.8
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 4.6e-46 188.0 125 76.8
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 4.6e-46 188.0 125 76.8
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 6.0e-46 187.6 129 79.8
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 1.0e-45 186.8 130 73.1
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 1.7e-45 186.0 129 78.3
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 1.7e-45 186.0 129 78.3
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 1.7e-45 186.0 129 78.3
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.7e-45 186.0 133 74.4
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 2.3e-45 185.7 133 74.4
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 3.0e-45 185.3 125 77.6
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 3.9e-45 184.9 135 74.8
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 6.6e-45 184.1 127 77.2
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 8.7e-45 183.7 130 76.2
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.5e-44 183.0 125 72.0
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.5e-44 183.0 130 76.2
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 1.9e-44 182.6 128 75.8
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 2.5e-44 182.2 135 74.1
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.5e-44 182.2 132 75.0
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 4.3e-44 181.4 130 75.4
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 4.3e-44 181.4 128 75.8
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 5.6e-44 181.0 130 75.4
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 7.3e-44 180.6 131 71.8
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 9.6e-44 180.3 130 73.8
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.3e-43 179.9 124 75.0
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 1.6e-43 179.5 129 74.4
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.8e-43 178.7 130 73.1
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 3.6e-43 178.3 115 76.5
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 3.6e-43 178.3 129 72.1
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 8.1e-43 177.2 129 74.4
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 8.1e-43 177.2 127 73.2
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 8.1e-43 177.2 132 74.2
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.4e-42 176.4 130 72.3
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 2.4e-42 175.6 134 73.1
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 2.4e-42 175.6 130 73.1
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 2.4e-42 175.6 125 76.8
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 5.3e-42 174.5 125 76.8
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.9e-42 174.1 129 76.0
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.9e-42 174.1 129 76.0
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 6.9e-42 174.1 129 76.0
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 9.0e-42 173.7 118 73.7
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 9.0e-42 173.7 115 77.4
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 2.0e-41 172.6 131 71.8
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 2.0e-41 172.6 128 72.7
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 9.9e-41 170.2 128 74.2
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 2.9e-40 168.7 127 73.2
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 2.9e-40 168.7 127 72.4
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 2.9e-40 168.7 127 70.9
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.9e-40 167.9 132 73.5
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 4.9e-40 167.9 125 71.2
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 4.9e-40 167.9 126 69.8
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 4.9e-40 167.9 106 82.1
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 8.4e-40 167.2 110 77.3
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.1e-39 166.8 103 83.5
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 1.9e-39 166.0 125 70.4
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 9.3e-39 163.7 125 68.8
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 9.3e-39 163.7 125 68.8
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 7.9e-38 160.6 105 80.0
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 7.9e-38 160.6 98 81.6
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.0e-37 160.2 98 81.6
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 3.9e-37 158.3 123 68.3
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 3.9e-37 158.3 123 67.5
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.1e-36 156.8 122 68.9
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.5e-36 156.4 130 67.7
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 4.3e-36 154.8 123 66.7
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 1.4e-34 149.8 126 61.9
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.4e-34 149.1 127 66.9
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 9.0e-34 147.1 119 65.5
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 2.6e-33 145.6 115 67.0
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 2.6e-33 145.6 114 66.7
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 6.4e-32 141.0 126 61.9
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 8.4e-32 140.6 91 81.3
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.1e-31 140.2 95 74.7
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 4.2e-31 138.3 111 64.9
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 7.9e-30 134.0 96 74.0
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 5.1e-29 131.3 83 78.3
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 5.1e-29 131.3 75 85.3
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 7.4e-28 127.5 127 59.8
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 9.6e-28 127.1 111 61.3
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 9.6e-28 127.1 125 59.2
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.2e-25 120.2 95 69.5
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 1.5e-25 119.8 126 59.5
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 3.4e-25 118.6 69 84.1
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 3.8e-24 115.2 123 55.3
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 6.5e-24 114.4 97 63.9
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 7.1e-23 110.9 98 62.2
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 2.3e-21 105.9 79 70.9
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.9e-21 105.1 74 73.0
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 4.8e-19 98.2 68 72.1
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 4.1e-18 95.1 85 60.0
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 5.3e-18 94.7 93 59.1
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 4.5e-17 91.7 70 68.6
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 5.0e-16 88.2 46 95.7
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 1.4e-15 86.7 67 59.7
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 3.2e-07 58.9 72 48.6


User provided reference genes

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