Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 0.0e+00 1221.5 631 100.0
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 0.0e+00 1177.5 631 96.2
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 0.0e+00 1122.5 631 92.4
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 0.0e+00 1100.1 617 93.0
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 1.3e-311 1072.4 631 86.8
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 1.2e-301 1039.3 639 85.0
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 2.8e-301 1038.1 637 85.9
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 2.8e-301 1038.1 637 85.9
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 1.2e-299 1032.7 639 84.4
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 2.9e-298 1028.1 639 85.1
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 3.9e-295 1017.7 639 85.0
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 2.8e-277 958.4 591 85.6
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 1.4e-273 946.0 652 76.5
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 8.7e-271 936.8 647 76.0
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 3.3e-270 934.9 647 75.7
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 7.4e-270 933.7 642 75.2
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 1.4e-268 929.5 642 74.8
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 5.3e-268 927.5 643 74.2
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 1.2e-267 926.4 647 75.3
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 2.4e-265 918.7 634 76.2
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 2.4e-265 918.7 654 73.9
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 2.1e-264 915.6 645 74.6
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 4.6e-264 914.4 651 74.0
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 7.9e-264 913.7 645 74.6
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.0e-263 913.3 644 73.6
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 8.7e-263 910.2 646 74.3
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 1.9e-262 909.1 644 73.4
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 4.3e-262 907.9 635 74.5
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 7.4e-262 907.1 649 73.5
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 9.6e-262 906.7 648 73.3
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 3.7e-261 904.8 647 73.9
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 6.2e-261 904.0 645 74.1
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 8.2e-261 903.7 647 73.7
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 1.1e-260 903.3 657 73.4
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 5.3e-260 901.0 635 73.9
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 1.2e-259 899.8 628 76.1
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 4.5e-259 897.9 649 72.9
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 5.8e-259 897.5 646 73.2
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 7.6e-259 897.1 640 75.0
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 1.3e-258 896.3 645 74.1
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.3e-258 896.3 638 74.1
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 1.7e-258 896.0 626 75.7
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 2.2e-258 895.6 645 73.2
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 2.9e-258 895.2 647 72.3
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 3.8e-258 894.8 657 73.1
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 4.9e-258 894.4 634 74.8
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 6.5e-258 894.0 626 74.4
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 9.3e-257 890.2 629 75.4
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 7.9e-256 887.1 648 72.2
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 3.3e-254 881.7 652 71.2
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 2.2e-253 879.0 656 70.3
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 2.8e-253 878.6 626 73.3
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 6.9e-252 874.0 628 73.6
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 1.2e-251 873.2 659 69.5
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 3.4e-251 871.7 627 73.8
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 4.5e-251 871.3 651 69.9
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 7.6e-251 870.5 638 72.6
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 1.0e-250 870.2 645 71.9
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 3.8e-250 868.2 636 73.3
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 3.2e-249 865.1 639 71.5
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 1.2e-248 863.2 649 70.1
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 2.1e-248 862.4 633 70.5
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 3.6e-248 861.7 647 70.2
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 3.6e-248 861.7 640 72.2
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 6.1e-248 860.9 653 69.5
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 7.9e-248 860.5 651 69.7
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 1.4e-247 859.8 653 69.8
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 1.4e-247 859.8 650 69.7
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 1.4e-247 859.8 638 71.6
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 3.0e-247 858.6 652 69.5
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 3.9e-247 858.2 655 69.6
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 5.1e-247 857.8 634 70.0
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 1.1e-246 856.7 650 69.7
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 1.1e-246 856.7 647 70.0
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 5.7e-246 854.4 651 68.4
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 9.7e-246 853.6 617 73.1
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 9.7e-246 853.6 650 68.8
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 1.3e-245 853.2 654 69.1
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 1.7e-245 852.8 650 69.8
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 2.8e-245 852.0 650 70.5
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 8.2e-245 850.5 643 70.9
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 2.0e-243 845.9 641 70.4
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 2.0e-243 845.9 641 70.4
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 7.7e-243 844.0 641 70.2
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 8.5e-242 840.5 641 69.0
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 1.9e-241 839.3 594 74.7
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 5.5e-241 837.8 643 70.1
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 3.6e-240 835.1 653 68.6
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 3.6e-240 835.1 640 67.5
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 6.1e-240 834.3 647 69.2
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 3.0e-239 832.0 633 70.9
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.3e-237 826.6 644 68.3
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 1.3e-237 826.6 642 67.4
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 4.8e-237 824.7 635 70.4
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 2.4e-236 822.4 633 70.1
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 9.1e-236 820.5 633 70.0
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 2.0e-235 819.3 641 66.3
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 7.7e-235 817.4 645 67.9
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 4.7e-232 808.1 633 67.5
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 2.0e-230 802.7 640 67.8
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 3.3e-230 802.0 648 66.0
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 8.5e-226 787.3 632 66.5
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 2.3e-223 779.2 645 66.2
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 8.8e-223 777.3 645 65.9
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 2.6e-222 775.8 651 65.1
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 5.5e-217 758.1 640 65.3
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 9.4e-217 757.3 638 63.6
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 6.6e-210 734.6 636 61.5
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 6.1e-208 728.0 616 65.1
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 3.5e-203 712.2 636 61.5
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 3.3e-201 705.7 532 70.9
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 9.5e-201 704.1 635 60.8
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 5.4e-196 688.3 630 60.3
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 1.6e-195 686.8 644 58.7
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 1.1e-191 674.1 627 61.4
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 2.3e-191 672.9 640 57.5
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 4.0e-191 672.2 641 57.7
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 8.3e-181 637.9 617 59.3
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 2.1e-171 606.7 641 54.4
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.3e-160 570.9 539 58.6
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 4.3e-153 545.8 629 52.5
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 2.6e-150 536.6 658 48.3
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 3.3e-145 519.6 659 46.6
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 4.7e-123 446.0 660 42.9
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 6.7e-122 442.2 348 67.0
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 4.2e-108 396.4 317 67.8
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 1.4e-90 338.2 381 49.9
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 6.8e-90 335.9 243 68.3
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 7.3e-68 262.7 298 52.0
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 1.3e-40 172.2 114 79.8
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 4.9e-40 170.2 565 30.4
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 5.6e-36 156.8 112 70.5
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 1.1e-23 115.9 113 58.4
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 6.1e-14 83.6 90 51.1
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 2.5e-12 78.2 79 49.4
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 1.2e-09 69.3 41 80.5
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 5.5e-07 60.5 50 56.0


User provided reference genes

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