Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G082000 Glycine max HOM05D006603 ORTHO05D007786 5.2e-73 277.7 150 100.0
Lj6g0018890 Lotus japonicus HOM05D006603 ORTHO05D007786 5.8e-64 247.7 150 88.0
Phvul.007G231900 Phaseolus vulgaris HOM05D006603 ORTHO05D007786 1.3e-63 246.5 146 91.8
Lalb_Chr03g0036931 Lupinus albus HOM05D006603 ORTHO05D007786 3.2e-62 241.9 150 86.7
Medtr1g045660 Medicago truncatula HOM05D006603 ORTHO05D007786 5.4e-62 241.1 149 87.2
Ca_25848_v3 Cicer arietinum L. HOM05D006603 ORTHO05D007786 9.2e-62 240.4 147 86.4
Psat6g018400 Pisum sativum HOM05D006603 ORTHO05D007786 3.5e-61 238.4 150 86.0
TPR.G23967 Trifolium pratense HOM05D006603 ORTHO05D007786 4.3e-59 231.5 147 83.0
arahy.Tifrunner.gnm1.ann1.T2GGRX Arachis hypogaea HOM05D006603 ORTHO05D007786 1.8e-57 226.1 176 73.3
arahy.Tifrunner.gnm1.ann1.GIKJ41 Arachis hypogaea HOM05D006603 ORTHO05D007786 4.0e-57 224.9 176 72.7
VMungo0720G0308 Vigna mungo HOM05D006603 ORTHO05D007786 7.3e-51 204.1 123 87.8
CiPaw.01G176600 Carya illinoinensis HOM05D006603 ORTHO05D007786 3.6e-50 201.8 150 72.7
Manes.03G157300 Manihot esculenta HOM05D006603 ORTHO05D007786 7.6e-48 194.1 148 72.3
Thecc.04G267600 Theobroma cacao HOM05D006603 ORTHO05D007786 4.9e-47 191.4 150 70.0
Ciclev10006126m.g Citrus clementina HOM05D006603 ORTHO05D007786 1.4e-46 189.9 153 68.6
Dinv29792 Davidia involucrata HOM05D006603 ORTHO05D007786 2.7e-45 185.7 148 70.9
MELO3C023048.2 Cucumis melo HOM05D006603 ORTHO05D007786 7.8e-45 184.1 147 66.7
CsaV3_2G012360 Cucumis sativus L. HOM05D006603 ORTHO05D007786 2.3e-44 182.6 147 67.3
TWI73G0993 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 3.9e-44 181.8 150 66.7
Gohir.D09G231900 Gossypium hirsutum HOM05D006603 ORTHO05D007786 8.7e-44 180.6 144 67.4
TAR633G2131 Trochodendron aralioides HOM05D006603 ORTHO05D007786 8.7e-44 180.6 147 68.7
TWI09G1292 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 1.5e-43 179.9 150 69.3
CANSAT78G1588 Cannabis sativa HOM05D006603 ORTHO05D007786 3.3e-43 178.7 149 67.1
GSVIVG01027941001 Vitis vinifera HOM05D006603 ORTHO05D007786 3.3e-43 178.7 143 72.7
Gohir.A09G230800 Gossypium hirsutum HOM05D006603 ORTHO05D007786 5.6e-43 177.9 144 66.7
Duzib151G0118 Durio zibethinus HOM05D006603 ORTHO05D007786 9.6e-43 177.2 139 70.5
Duzib212G0187 Durio zibethinus HOM05D006603 ORTHO05D007786 1.3e-42 176.8 150 66.7
CSS0001604 Camellia sinensis var. sinensis HOM05D006603 ORTHO05D007786 1.6e-42 176.4 148 64.9
Eucgr.H02902 Eucalyptus grandis HOM05D006603 ORTHO05D007786 2.8e-42 175.6 151 66.2
MD16G1228700 Malus domestica HOM05D006603 ORTHO05D007786 2.8e-42 175.6 150 64.7
Potri.008G173000 Populus trichocarpa HOM05D006603 ORTHO05D007786 2.8e-42 175.6 151 66.2
Potri.010G064500 Populus trichocarpa HOM05D006603 ORTHO05D007786 2.8e-42 175.6 151 67.5
MD13G1223900 Malus domestica HOM05D006603 ORTHO05D007786 3.6e-42 175.3 150 64.0
FvH4_4g05040 Fragaria vesca HOM05D006603 ORTHO05D007786 4.8e-42 174.9 150 66.0
FAN12G4195 Fragaria x ananassa HOM05D006603 ORTHO05D007786 4.8e-42 174.9 150 66.0
Manes.15G046500 Manihot esculenta HOM05D006603 ORTHO05D007786 4.8e-42 174.9 140 70.0
THA.LOC104816009 Tarenaya hassleriana HOM05D006603 ORTHO05D007786 8.1e-42 174.1 144 68.1
Hma1.2p1_0112F.1_g054890 Hydrangea macrophylla HOM05D006603 ORTHO05D007786 1.1e-41 173.7 144 65.3
PGR004G2303 Punica granatum HOM05D006603 ORTHO05D007786 1.4e-41 173.3 146 65.1
EL10Ac3g06681 Beta vulgaris HOM05D006603 ORTHO05D007786 3.1e-41 172.2 147 61.9
RcHm_v2.0_Chr4g0395941 Rosa chinensis HOM05D006603 ORTHO05D007786 3.1e-41 172.2 150 66.0
Actinidia39936 Actinidia chinensis HOM05D006603 ORTHO05D007786 9.0e-41 170.6 147 63.3
MBI10_g39247_MAGBIO Magnolia biondii HOM05D006603 ORTHO05D007786 1.2e-40 170.2 148 62.8
Sc25g0004840 Simmondsia chinensis HOM05D006603 ORTHO05D007786 1.5e-40 169.9 148 64.9
FAN22G1779 Fragaria x ananassa HOM05D006603 ORTHO05D007786 4.5e-40 168.3 150 64.0
Cc03_g06500 Coffea canephora HOM05D006603 ORTHO05D007786 2.2e-39 166.0 145 64.8
Aqoxy2G03755 Aquilegia oxysepala HOM05D006603 ORTHO05D007786 4.9e-39 164.9 150 63.3
Actinidia11378 Actinidia chinensis HOM05D006603 ORTHO05D007786 1.1e-38 163.7 147 61.9
Hund22279 Selenicereus undatus HOM05D006603 ORTHO05D007786 1.4e-38 163.3 147 61.2
Nitab4.5_0005154g0030 Nicotiana tabacum HOM05D006603 ORTHO05D007786 2.1e-37 159.5 143 62.2
Lsat_1_v5_gn_1_75441 Lactuca sativa HOM05D006603 ORTHO05D007786 1.8e-36 156.4 149 62.4
Carub.0001s0377 Capsella rubella HOM05D006603 ORTHO05D007786 2.3e-36 156.0 141 63.1
CAN.G812.23 Capsicum annuum HOM05D006603 ORTHO05D007786 3.0e-36 155.6 143 60.1
vmacro15486 Vaccinium macrocarpon HOM05D006603 ORTHO05D007786 5.1e-36 154.8 170 55.3
AL1G14230 Arabidopsis lyrata HOM05D006603 ORTHO05D007786 1.1e-35 153.7 142 63.4
BcaNung06560 Brassica carinata HOM05D006603 ORTHO05D007786 1.1e-35 153.7 143 62.2
BolC5t29054H Brassica oleracea HOM05D006603 ORTHO05D007786 1.1e-35 153.7 141 63.1
AT1G04555 Arabidopsis thaliana HOM05D006603 ORTHO05D007786 1.5e-35 153.3 142 62.0
Thhalv10009014m.g Eutrema salsugineum HOM05D006603 ORTHO05D007786 1.5e-35 153.3 148 61.5
Peaxi162Scf00531g00210 Petunia axillaris HOM05D006603 ORTHO05D007786 2.5e-35 152.5 145 60.0
Sp1g03390 Schrenkiella parvula HOM05D006603 ORTHO05D007786 5.6e-35 151.4 154 57.8
BraA10t42567Z Brassica rapa HOM05D006603 ORTHO05D007786 7.4e-35 151.0 142 63.4
Haze_11482 Corylus avellana HOM05D006603 ORTHO05D007786 2.8e-34 149.1 140 65.7
QL06p021600 Quercus lobata HOM05D006603 ORTHO05D007786 2.8e-34 149.1 98 81.6
Sopen09g033770 Solanum pennellii HOM05D006603 ORTHO05D007786 4.8e-34 148.3 145 57.2
ClCG06G007300 Citrullus lanatus HOM05D006603 ORTHO05D007786 8.1e-34 147.5 154 57.8
PSO210G0805 Papaver somniferum HOM05D006603 ORTHO05D007786 1.8e-33 146.4 143 59.4
PGSC0003DMG400001502 Solanum tuberosum HOM05D006603 ORTHO05D007786 4.0e-33 145.2 145 56.6
HanXRQChr01g0023081 Helianthus annuus HOM05D006603 ORTHO05D007786 5.3e-33 144.8 149 57.0
COL.COLO4_15990 Corchorus olitorius HOM05D006603 ORTHO05D007786 2.6e-32 142.5 121 62.8
Cfa014798 Carpinus fangiana HOM05D006603 ORTHO05D007786 3.4e-32 142.1 96 82.3
ATR0787G168 Amborella trichopoda HOM05D006603 ORTHO05D007786 4.5e-32 141.7 142 57.0
Sed0025873 Sechium edule HOM05D006603 ORTHO05D007786 5.8e-32 141.4 123 61.0
CARHR003900 Cardamine hirsuta HOM05D006603 ORTHO05D007786 9.9e-32 140.6 134 59.7
PSO210G7184 Papaver somniferum HOM05D006603 ORTHO05D007786 9.9e-32 140.6 145 58.6
CDE04G0122 Ceratophyllum demersum HOM05D006603 ORTHO05D007786 1.3e-31 140.2 144 61.8
ECA248G1661 Erigeron canadensis HOM05D006603 ORTHO05D007786 1.3e-31 140.2 150 56.7
Oeu059390.1 Olea europaea HOM05D006603 ORTHO05D007786 3.8e-31 138.7 151 53.6
Sabra08G0132100 Salix brachista HOM05D006603 ORTHO05D007786 4.9e-31 138.3 96 79.2
MSTRG.9849 Avicennia marina HOM05D006603 ORTHO05D007786 6.4e-31 137.9 153 54.9
Aa31LG1G20320 Aethionema arabicum HOM05D006603 ORTHO05D007786 1.4e-30 136.7 140 60.7
Gorai.006G254700 Gossypium raimondii HOM05D006603 ORTHO05D007786 1.4e-30 136.7 121 61.2
Prupe.1G050700 Prunus persica HOM05D006603 ORTHO05D007786 1.9e-30 136.3 99 74.7
arahy.Tifrunner.gnm1.ann1.YUK4FD Arachis hypogaea HOM05D006603 ORTHO05D007786 9.3e-30 134.0 141 58.9
arahy.Tifrunner.gnm1.ann1.M12JR8 Arachis hypogaea HOM05D006603 ORTHO05D007786 1.2e-29 133.7 142 59.9
Migut.G00559 Erythranthe guttata HOM05D006603 ORTHO05D007786 2.7e-29 132.5 153 51.6
AUR62018035 Chenopodium quinoa HOM05D006603 ORTHO05D007786 6.0e-29 131.3 119 61.3
SGA_v2.0_scaffold147G36268 Striga asiatica HOM05D006603 ORTHO05D007786 1.0e-28 130.6 150 54.7
FAN17G1046 Fragaria x ananassa HOM05D006603 ORTHO05D007786 1.3e-28 130.2 99 72.7
AUR62015239 Chenopodium quinoa HOM05D006603 ORTHO05D007786 2.3e-28 129.4 118 60.2
BolC8t46928H Brassica oleracea HOM05D006603 ORTHO05D007786 3.3e-27 125.6 145 54.5
BolC8t46924H Brassica oleracea HOM05D006603 ORTHO05D007786 4.3e-27 125.2 145 54.5
BolC8t46925H Brassica oleracea HOM05D006603 ORTHO05D007786 4.3e-27 125.2 145 54.5
Os02g0816700 Oryza sativa ssp. japonica HOM05D006603 ORTHO05D007786 7.4e-27 124.4 153 51.0
BcaC07g36903 Brassica carinata HOM05D006603 ORTHO05D007786 9.6e-27 124.0 139 56.8
A08p36880 Brassica napus HOM05D006603 ORTHO05D007786 9.6e-27 124.0 145 53.8
BolC8t46922H Brassica oleracea HOM05D006603 ORTHO05D007786 9.6e-27 124.0 145 53.8
Rhsim02G0047700 Rhododendron simsii HOM05D006603 ORTHO05D007786 2.1e-26 122.9 119 55.5
Cfa014800 Carpinus fangiana HOM05D006603 ORTHO05D007786 2.8e-26 122.5 80 82.5
arahy.Tifrunner.gnm1.ann1.QP5CHE Arachis hypogaea HOM05D006603 ORTHO05D007786 6.2e-26 121.3 128 62.5
Ah.04g153810 Amaranthus hybridus HOM05D006603 ORTHO05D007786 1.1e-25 120.6 121 57.9
HPP92_020757 Vanilla planifolia HOM05D006603 ORTHO05D007786 1.4e-25 120.2 154 47.4
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 5.3e-25 118.2 137 56.2
Zm00001eb191430 Zea mays HOM05D006603 ORTHO05D007786 5.3e-25 118.2 96 69.8
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 4.5e-24 115.2 95 69.5
C05p02730 Brassica napus HOM05D001210 ORTHO05D001036 1.3e-23 113.6 115 58.3
Solyc09g090820.4 Solanum lycopersicum HOM05D006603 ORTHO05D007786 1.3e-23 113.6 89 68.5
Dinv27124 Davidia involucrata HOM05D006603 ORTHO05D007786 3.2e-22 109.0 83 74.7
Nitab4.5_0001041g0010 Nicotiana tabacum HOM05D006603 ORTHO05D007786 1.2e-21 107.1 122 52.5
BcaB03g13488 Brassica carinata HOM05D006603 ORTHO05D007786 2.1e-21 106.3 127 52.0
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 2.1e-21 106.3 95 67.4
BraA08t35589Z Brassica rapa HOM05D003335 ORTHO05D003853 2.7e-21 105.9 95 67.4
Cpa.g.sc59.20 Carica papaya HOM05D006603 ORTHO05D007786 1.3e-20 103.6 72 75.0
BraA09t42112Z Brassica rapa HOM05D000117 ORTHO05D007786 3.0e-20 102.4 97 68.0
unitig_32.g11693 Utricularia gibba HOM05D006603 ORTHO05D007786 3.0e-20 102.4 169 41.4
arahy.Tifrunner.gnm1.ann1.N50CGY Arachis hypogaea HOM05D006603 ORTHO05D007786 1.1e-19 100.5 90 67.8
arahy.Tifrunner.gnm1.ann1.49WF5R Arachis hypogaea HOM05D006603 ORTHO05D007786 5.7e-19 98.2 86 69.8
SalBow2G0496 Salvia bowleyana HOM05D006603 ORTHO05D007786 9.0e-17 90.9 129 46.5
Sabra10G0042500 Salix brachista HOM05D006603 ORTHO05D007786 1.0e-15 87.4 96 54.2
GSVIVG01027940001 Vitis vinifera HOM05D006603 ORTHO05D015671 2.7e-13 79.3 77 63.6
AagrBONN_evm.TU.Sc2ySwM_228.3673 Anthoceros agrestis HOM05D002103 ORTHO05D004020 9.7e-11 70.9 142 34.5
C08p52130 Brassica napus HOM05D000117 ORTHO05D001036 9.7e-11 70.9 65 64.6
Nn1g02998 Nelumbo nucifera HOM05D006603 ORTHO05D007786 3.7e-10 68.9 79 49.4
A09p67800 Brassica napus HOM05D000117 ORTHO05D001036 6.3e-10 68.2 64 67.2
SMO144G0051 Selaginella moellendorffii HOM05D002103 ORTHO05D007786 8.2e-10 67.8 138 31.2
Pp3c12_23290 Physcomitrium patens HOM05D002103 ORTHO05D004020 2.4e-09 66.2 141 31.9
QL06p021608 Quercus lobata HOM05D006603 ORTHO05D007786 4.1e-09 65.5 52 59.6
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 5.3e-09 65.1 144 31.9
Hma1.2p1_0982F.1_g243900 Hydrangea macrophylla HOM05D002103 ORTHO05D004020 2.0e-08 63.2 135 34.8
SMO308G0045 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 5.9e-08 61.6 135 32.6
Mapoly0020s0146 Marchantia polymorpha HOM05D002103 ORTHO05D007786 1.0e-07 60.8 144 29.9
SGA_v2.0_scaffold14G07034 Striga asiatica HOM05D002103 ORTHO05D004020 2.2e-07 59.7 137 33.6
Gohir.D06G015300 Gossypium hirsutum HOM05D002103 ORTHO05D004020 2.9e-07 59.3 141 31.2
A10p02970 Brassica napus HOM05D000117 ORTHO05D001036 3.8e-07 58.9 46 71.7
GSVIVG01009523001 Vitis vinifera HOM05D002103 ORTHO05D004020 3.8e-07 58.9 133 33.1
MD15G1084700 Malus domestica HOM05D002103 ORTHO05D004020 5.0e-07 58.5 141 30.5
Gohir.A06G017200 Gossypium hirsutum HOM05D002103 ORTHO05D004020 6.5e-07 58.2 141 30.5
Peaxi162Scf00528g00417 Petunia axillaris HOM05D002103 ORTHO05D004020 6.5e-07 58.2 147 33.3
Actinidia23265 Actinidia chinensis HOM05D002103 ORTHO05D004020 1.1e-06 57.4 133 32.3
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 1.4e-06 57.0 141 30.5
Prupe.1G438400 Prunus persica HOM05D002103 ORTHO05D004020 1.4e-06 57.0 140 30.0
TAR381G0883 Trochodendron aralioides HOM05D002103 ORTHO05D004020 1.4e-06 57.0 142 28.9
Thhalv10025691m.g Eutrema salsugineum HOM05D002103 ORTHO05D004020 2.5e-06 56.2 141 30.5
MD08G1103400 Malus domestica HOM05D002103 ORTHO05D004020 2.5e-06 56.2 141 29.1
TAR625G1123 Trochodendron aralioides HOM05D002103 ORTHO05D004020 2.5e-06 56.2 145 29.0
Atru.chr13.650 Acer truncatum HOM05D002103 ORTHO05D004020 3.2e-06 55.8 144 29.2
CiPaw.16G045800 Carya illinoinensis HOM05D002103 ORTHO05D004020 3.2e-06 55.8 141 32.6
BolC8t46926H Brassica oleracea HOM05D006603 ORTHO05D007786 4.2e-06 55.5 107 37.4
CSS0022390 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 4.2e-06 55.5 135 32.6
Nn5g30229 Nelumbo nucifera HOM05D002103 ORTHO05D004020 4.2e-06 55.5 133 30.8
CARHR241420 Cardamine hirsuta HOM05D002103 ORTHO05D004020 5.5e-06 55.1 140 29.3
Manes.05G171920 Manihot esculenta HOM05D002103 ORTHO05D004020 5.5e-06 55.1 135 31.9
Manes.05G171940 Manihot esculenta HOM05D002103 ORTHO05D004020 5.5e-06 55.1 135 31.9
Manes.05G172000 Manihot esculenta HOM05D002103 ORTHO05D004020 5.5e-06 55.1 135 31.9
Manes.18G032500 Manihot esculenta HOM05D002103 ORTHO05D004020 5.5e-06 55.1 131 28.2
AagrBONN_evm.TU.Sc2ySwM_362.2116 Anthoceros agrestis HOM05D006603 ORTHO05D007786 7.2e-06 54.7 142 29.6
Cc10_g04320 Coffea canephora HOM05D002103 ORTHO05D004020 7.2e-06 54.7 130 34.6
VMungo1309G0516 Vigna mungo HOM05D002103 ORTHO05D004020 7.2e-06 54.7 154 31.8
Ciclev10001804m.g Citrus clementina HOM05D002103 ORTHO05D004020 9.4e-06 54.3 151 28.5
Duzib093G0320 Durio zibethinus HOM05D002103 ORTHO05D004020 9.4e-06 54.3 139 28.8


User provided reference genes

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