Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 5.3e-179 631.7 561 100.0
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 2.7e-90 337.0 258 75.2
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 2.7e-66 257.3 216 66.7
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 2.6e-61 240.7 213 64.3
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 2.8e-55 220.7 227 56.8
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 2.6e-53 214.2 280 49.3
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 8.2e-47 192.6 210 55.2
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 9.1e-46 189.1 167 62.3
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 1.7e-44 184.9 236 49.2
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 4.0e-33 147.1 235 44.7
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 2.6e-32 144.4 235 44.3
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 5.4e-30 136.7 213 43.2
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 1.1e-27 129.0 227 40.5
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 1.1e-27 129.0 206 40.3
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 2.5e-27 127.9 227 39.6
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 9.5e-27 125.9 231 39.4
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.8e-25 121.7 217 39.2
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 4.4e-24 117.1 209 36.4
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 5.8e-24 116.7 195 44.6
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 2.9e-23 114.4 203 40.9
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 1.8e-22 111.7 196 39.3
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 1.8e-22 111.7 148 40.5
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 5.4e-22 110.2 182 39.6
Lalb_Chr11g0073041 Lupinus albus HOM05D004255 ORTHO05D004815 2.0e-21 108.2 80 68.8
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 2.7e-21 107.8 220 38.2
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 1.3e-20 105.5 204 39.2
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 1.7e-20 105.1 206 40.8
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 3.9e-20 104.0 174 42.0
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 1.9e-19 101.7 199 38.7
Sabra03G0004500 Salix brachista HOM05D004255 ORTHO05D004815 4.3e-19 100.5 124 47.6
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 7.3e-19 99.8 207 37.2
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 2.8e-18 97.8 175 37.1
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 3.6e-18 97.4 205 33.2
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 3.6e-18 97.4 175 37.1
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 4.7e-18 97.1 185 34.1
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 6.2e-18 96.7 198 37.9
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 6.2e-18 96.7 207 33.8
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 6.2e-18 96.7 174 36.8
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 1.1e-17 95.9 176 36.4
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 2.3e-17 94.7 168 42.3
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 2.3e-17 94.7 173 37.0
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 3.1e-17 94.4 207 31.9
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 3.1e-17 94.4 206 35.4
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 4.0e-17 94.0 136 47.1
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 1.2e-16 92.4 202 32.7
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 1.5e-16 92.0 172 36.6
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 2.0e-16 91.7 168 39.9
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 2.0e-16 91.7 143 43.4
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 2.0e-16 91.7 206 31.6
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 2.6e-16 91.3 207 30.4
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 4.4e-16 90.5 143 43.4
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 9.8e-16 89.4 129 44.2
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.7e-15 88.6 129 44.2
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 2.9e-15 87.8 205 29.8
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 3.7e-15 87.4 114 45.6
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 3.7e-15 87.4 173 34.7
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 1.1e-14 85.9 206 32.0
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 1.1e-14 85.9 200 36.5
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 1.9e-14 85.1 120 44.2
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 2.4e-14 84.7 244 29.1
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 5.4e-14 83.6 190 33.7
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 9.2e-14 82.8 187 38.5
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 9.2e-14 82.8 208 30.8
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 9.2e-14 82.8 141 37.6
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 9.2e-14 82.8 179 31.3
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 1.2e-13 82.4 186 33.3
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 1.6e-13 82.0 136 39.0
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 1.6e-13 82.0 154 33.8
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 2.0e-13 81.6 161 38.5
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.7e-13 81.3 143 39.9
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 4.6e-13 80.5 144 38.2
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 4.6e-13 80.5 150 33.3
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 6.0e-13 80.1 199 31.7
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 7.8e-13 79.7 107 45.8
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.0e-12 79.3 201 32.8
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 1.3e-12 79.0 134 38.1
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 1.3e-12 79.0 198 34.8
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 1.7e-12 78.6 194 30.9
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 2.3e-12 78.2 159 37.1
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 5.0e-12 77.0 147 37.4
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 6.6e-12 76.6 199 35.2
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 8.6e-12 76.3 134 36.6
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 8.6e-12 76.3 137 40.1
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 8.6e-12 76.3 181 37.6
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 8.6e-12 76.3 134 38.1
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 1.1e-11 75.9 209 31.6
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.1e-11 75.9 152 35.5
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 1.9e-11 75.1 149 33.6
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 3.3e-11 74.3 172 36.0
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 5.6e-11 73.6 205 24.9
FAN02G2222 Fragaria x ananassa HOM05D004255 ORTHO05D004815 7.3e-11 73.2 107 41.1
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 1.2e-10 72.4 156 32.7
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 1.6e-10 72.0 189 30.7
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 2.1e-10 71.6 107 39.3
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 2.8e-10 71.2 178 29.2
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 3.6e-10 70.9 115 40.0
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 6.2e-10 70.1 112 38.4
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 6.2e-10 70.1 191 30.9
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 6.2e-10 70.1 133 34.6
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 1.1e-09 69.3 196 33.2
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 1.4e-09 68.9 226 28.8
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 1.4e-09 68.9 148 36.5
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 1.8e-09 68.6 174 30.5
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 2.3e-09 68.2 192 31.2
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 3.1e-09 67.8 112 36.6
Atru.chr8.977 Acer truncatum HOM05D004255 ORTHO05D004815 4.0e-09 67.4 90 44.4
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 4.0e-09 67.4 192 31.2
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 6.8e-09 66.6 114 33.3
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 1.5e-08 65.5 139 35.3
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 2.0e-08 65.1 130 35.4
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 2.0e-08 65.1 139 35.3
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 2.6e-08 64.7 139 35.3
Atru.chr13.2607 Acer truncatum HOM05D004255 ORTHO05D004815 3.4e-08 64.3 102 37.3
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 3.4e-08 64.3 215 27.9
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 3.4e-08 64.3 110 34.5
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 4.4e-08 63.9 204 26.5
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 4.4e-08 63.9 163 30.7
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 7.5e-08 63.2 130 33.8
Os07g0671200 Oryza sativa ssp. japonica HOM05D032177 ORTHO05D004815 1.3e-07 62.4 167 29.9
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.3e-07 62.4 192 30.2
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 2.2e-07 61.6 161 32.3
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 2.2e-07 61.6 128 35.9
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 2.2e-07 61.6 207 26.1
ECA238G3169 Erigeron canadensis HOM05D004255 ORTHO05D004815 2.9e-07 61.2 70 45.7
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 4.9e-07 60.5 134 32.1
Gohir.A09G148000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 6.4e-07 60.1 48 64.6
Zm00001eb111150 Zea mays HOM05D032177 ORTHO05D004815 3.2e-06 57.8 175 29.7
Zm00001eb111120 Zea mays HOM05D032177 ORTHO05D004815 5.4e-06 57.0 174 28.7
EL10Ac9g21605 Beta vulgaris HOM05D000001 ORTHO05D009961 9.2e-06 56.2 66 39.4
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 9.2e-06 56.2 207 28.5


User provided reference genes

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