Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 1.4e-114 416.4 229 100.0
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 1.1e-106 390.2 229 96.1
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 3.2e-98 362.1 229 87.8
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 1.3e-86 323.6 232 78.0
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 1.4e-85 320.1 227 77.1
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 9.1e-85 317.4 231 75.8
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 4.5e-84 315.1 188 91.5
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 7.4e-79 297.7 227 75.8
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 3.5e-76 288.9 234 73.1
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 1.7e-75 286.6 229 72.1
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 3.2e-74 282.3 196 80.6
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 4.2e-58 228.8 207 65.2
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 8.0e-57 224.6 218 59.2
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 3.0e-56 222.6 233 56.2
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 6.8e-56 221.5 223 58.3
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 4.4e-55 218.8 234 56.4
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 7.5e-55 218.0 234 56.4
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 7.5e-55 218.0 226 59.7
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.7e-54 216.9 234 56.8
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 3.7e-54 215.7 234 56.4
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 4.8e-54 215.3 217 62.2
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 1.1e-53 214.2 217 61.8
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 3.1e-53 212.6 234 56.0
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 2.0e-52 209.9 222 56.8
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 5.9e-52 208.4 246 54.5
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 1.3e-51 207.2 219 56.2
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 1.1e-50 204.1 205 59.0
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 4.2e-50 202.2 214 59.8
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 1.6e-49 200.3 200 60.0
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 6.1e-49 198.4 213 57.7
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 1.0e-48 197.6 210 56.2
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 1.4e-48 197.2 248 52.8
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 1.4e-48 197.2 219 53.0
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 1.5e-47 193.7 204 56.9
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 3.4e-47 192.6 219 53.4
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 2.2e-46 189.9 208 53.4
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 3.7e-46 189.1 220 52.7
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 6.3e-46 188.3 222 53.2
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 1.4e-45 187.2 232 51.7
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 2.4e-45 186.4 219 51.1
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 3.2e-45 186.0 256 47.3
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 4.1e-45 185.7 224 51.3
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 1.6e-44 183.7 225 50.7
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 5.9e-44 181.8 220 52.7
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 1.3e-43 180.6 204 54.4
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 1.3e-43 180.6 204 53.9
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 6.6e-43 178.3 222 51.8
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 6.6e-43 178.3 208 54.8
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 1.5e-42 177.2 116 83.6
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 2.5e-42 176.4 212 51.9
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 4.3e-42 175.6 217 48.4
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 3.6e-41 172.6 232 48.7
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 4.7e-41 172.2 191 52.9
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 1.0e-40 171.0 223 48.0
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 1.8e-40 170.2 232 48.7
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 1.8e-40 170.2 191 53.9
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 1.8e-40 170.2 225 47.1
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 3.1e-40 169.5 227 47.1
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 3.1e-40 169.5 225 48.0
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 3.4e-39 166.0 219 44.7
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 9.8e-39 164.5 107 81.3
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 9.8e-39 164.5 201 48.8
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 3.7e-38 162.5 205 47.8
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 3.7e-38 162.5 201 46.8
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 6.4e-38 161.8 204 47.1
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 6.4e-38 161.8 239 45.2
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 2.0e-36 156.8 219 46.1
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 3.5e-36 156.0 219 46.1
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 1.0e-35 154.5 214 44.4
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 1.7e-35 153.7 232 45.3
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 5.0e-35 152.1 232 44.8
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 6.6e-35 151.8 212 44.8
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 2.5e-34 149.8 252 43.3
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 4.3e-34 149.1 196 48.5
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 4.3e-34 149.1 215 44.7
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 4.7e-33 145.6 212 43.4
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 6.2e-33 145.2 230 44.3
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 1.8e-32 143.7 214 42.1
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 3.1e-32 142.9 204 47.1
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 1.2e-31 141.0 221 43.4
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 1.5e-31 140.6 162 51.9
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 5.8e-31 138.7 161 55.9
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 2.9e-30 136.3 243 41.6
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 4.9e-30 135.6 231 40.3
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 8.3e-30 134.8 229 41.0
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 8.3e-30 134.8 216 42.6
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 1.4e-29 134.0 224 40.2
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 1.4e-29 134.0 136 55.9
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 2.4e-29 133.3 177 46.3
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 1.2e-28 131.0 214 41.1
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 3.0e-27 126.3 181 47.5
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 8.6e-27 124.8 185 46.5
Actinidia39942 Actinidia chinensis HOM05D005697 ORTHO05D006951 3.3e-26 122.9 177 46.9
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 1.8e-24 117.1 99 61.6
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 3.1e-24 116.3 202 40.6
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 4.0e-24 115.9 185 41.1
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 6.8e-24 115.2 227 40.1
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 6.8e-24 115.2 227 40.1
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 2.0e-23 113.6 193 44.0
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 2.6e-23 113.2 225 40.4
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 4.4e-23 112.5 227 39.6
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 4.4e-23 112.5 194 43.8
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 5.8e-23 112.1 216 43.1
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 1.7e-22 110.5 222 40.1
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 2.9e-22 109.8 230 41.3
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 6.4e-22 108.6 210 42.4
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 1.1e-21 107.8 225 41.3
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 1.4e-21 107.5 210 39.5
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 9.2e-21 104.8 222 40.5
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 9.2e-21 104.8 213 38.0
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 2.1e-20 103.6 207 40.6
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 3.5e-20 102.8 193 43.0
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 6.0e-20 102.1 185 41.1
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 1.3e-19 100.9 222 40.1
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 1.3e-19 100.9 222 40.1
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 1.3e-19 100.9 222 40.1
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 1.3e-19 100.9 222 40.1
PGSC0003DMG400011585 Solanum tuberosum HOM05D005697 ORTHO05D006951 5.6e-18 95.5 154 41.6
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 5.6e-18 95.5 202 38.6
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 1.6e-17 94.0 117 47.0
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 2.8e-17 93.2 182 42.3
unitig_26.g9545 Utricularia gibba HOM05D005697 ORTHO05D006951 3.6e-17 92.8 204 32.4
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 3.1e-16 89.7 114 50.9
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 3.1e-16 89.7 220 37.7
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 6.8e-16 88.6 183 38.3
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 8.9e-16 88.2 116 49.1
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 5.8e-15 85.5 226 36.3
CDE08G0630 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 7.6e-15 85.1 129 41.1
Nitab4.5_0000451g0070 Nicotiana tabacum HOM05D005697 ORTHO05D006951 7.6e-15 85.1 121 44.6
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 9.9e-15 84.7 133 42.1
Nitab4.5_0000867g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 1.8e-08 63.9 123 35.8
BcaC01g03341 Brassica carinata HOM05D005697 ORTHO05D006951 2.2e-06 57.0 154 34.4


User provided reference genes

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