Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G080900 Glycine max HOM05D004767 ORTHO05D005674 6.3e-79 297.4 149 100.0
Glyma.10G129800 Glycine max HOM05D004767 ORTHO05D005674 2.1e-74 282.3 144 96.5
Lj1g0021179 Lotus japonicus HOM05D004767 ORTHO05D005674 6.3e-71 270.8 144 91.7
Psat1g185000 Pisum sativum HOM05D004767 ORTHO05D005674 8.3e-71 270.4 144 93.1
Medtr4g077783 Medicago truncatula HOM05D004767 ORTHO05D005674 1.4e-70 269.6 144 91.0
Medtr4g111810 Medicago truncatula HOM05D004767 ORTHO05D005674 1.4e-70 269.6 144 91.7
TPR.G18695 Trifolium pratense HOM05D004767 ORTHO05D005674 4.1e-70 268.1 148 89.2
Glyma.12G025800 Glycine max HOM05D004767 ORTHO05D005674 7.0e-70 267.3 144 90.3
Ca_02533_v3 Cicer arietinum L. HOM05D004767 ORTHO05D005674 9.1e-70 266.9 144 90.3
Psat1g210160 Pisum sativum HOM05D004767 ORTHO05D005674 9.1e-70 266.9 144 91.7
TPR.G26773 Trifolium pratense HOM05D004767 ORTHO05D005674 2.0e-69 265.8 144 90.3
Lalb_Chr09g0324851 Lupinus albus HOM05D004767 ORTHO05D005674 4.5e-69 264.6 144 88.9
arahy.Tifrunner.gnm1.ann1.BE8FK9 Arachis hypogaea HOM05D004767 ORTHO05D005674 5.9e-69 264.2 144 88.2
VMungo1127G0990 Vigna mungo HOM05D004767 ORTHO05D005674 1.3e-68 263.1 143 88.8
Lalb_Chr05g0214971 Lupinus albus HOM05D004767 ORTHO05D005674 5.0e-68 261.2 144 88.9
Phvul.011G028400 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 5.0e-68 261.2 143 88.1
Nn6g31627 Nelumbo nucifera HOM05D004767 ORTHO05D005674 6.1e-66 254.2 144 82.6
TAR625G0043 Trochodendron aralioides HOM05D004767 ORTHO05D005674 1.0e-65 253.4 144 83.3
TAR625G0966 Trochodendron aralioides HOM05D004767 ORTHO05D005674 4.0e-65 251.5 144 82.6
FvH4_6g22900 Fragaria vesca HOM05D004767 ORTHO05D005674 5.2e-65 251.1 144 84.0
FAN09G1063 Fragaria x ananassa HOM05D004767 ORTHO05D005674 5.2e-65 251.1 144 84.0
FAN14G1715 Fragaria x ananassa HOM05D004767 ORTHO05D005674 8.9e-65 250.4 144 84.0
TAR381G0314 Trochodendron aralioides HOM05D004767 ORTHO05D005674 8.9e-65 250.4 144 81.2
FAN02G2069 Fragaria x ananassa HOM05D004767 ORTHO05D005674 2.0e-64 249.2 144 83.3
MD14G1063600 Malus domestica HOM05D004767 ORTHO05D005674 2.0e-64 249.2 144 81.2
MD12G1063000 Malus domestica HOM05D004767 ORTHO05D005674 2.6e-64 248.8 144 81.2
Lj4C240T4 Lonicera japonica HOM05D004767 ORTHO05D005674 3.4e-64 248.4 144 81.9
Dinv40217 Davidia involucrata HOM05D004767 ORTHO05D005674 2.2e-63 245.7 144 79.9
RcHm_v2.0_Chr3g0480691 Rosa chinensis HOM05D004767 ORTHO05D005674 2.2e-63 245.7 144 82.6
Prupe.7G070600 Prunus persica HOM05D004767 ORTHO05D005674 3.7e-63 245.0 144 80.6
arahy.Tifrunner.gnm1.ann1.AK1NBZ Arachis hypogaea HOM05D004767 ORTHO05D005674 4.9e-63 244.6 144 84.0
Cc07_g12190 Coffea canephora HOM05D004767 ORTHO05D005674 6.3e-63 244.2 143 80.4
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 8.3e-63 243.8 144 78.5
CANSAT54G2063 Cannabis sativa HOM05D004767 ORTHO05D005674 2.4e-62 242.3 144 80.6
Eucgr.H00074 Eucalyptus grandis HOM05D004767 ORTHO05D005674 3.1e-62 241.9 144 77.8
Peaxi162Scf00431g00415 Petunia axillaris HOM05D004767 ORTHO05D005674 4.1e-62 241.5 144 77.1
Oeu010411.1 Olea europaea HOM05D004767 ORTHO05D005674 7.0e-62 240.7 144 78.5
SGA_v2.0_scaffold108G30887 Striga asiatica HOM05D004767 ORTHO05D005674 1.6e-61 239.6 144 77.1
GSVIVG01017458001 Vitis vinifera HOM05D004767 ORTHO05D005674 4.5e-61 238.0 145 80.7
CiPaw.03G094400 Carya illinoinensis HOM05D004767 ORTHO05D005674 5.9e-61 237.7 144 79.9
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 5.9e-61 237.7 144 78.5
SalBow6G2358 Salvia bowleyana HOM05D004767 ORTHO05D005674 5.9e-61 237.7 144 77.1
Sc03g0004110 Simmondsia chinensis HOM05D004767 ORTHO05D005674 5.9e-61 237.7 144 79.2
MSTRG.16702 Avicennia marina HOM05D004767 ORTHO05D005674 7.8e-61 237.3 144 77.8
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 7.8e-61 237.3 144 79.2
Sed0020265 Sechium edule HOM05D004767 ORTHO05D005674 1.0e-60 236.9 144 77.8
SalBow6G5765 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.7e-60 236.1 144 76.4
Nitab4.5_0000235g0120 Nicotiana tabacum HOM05D004767 ORTHO05D005674 2.3e-60 235.7 144 75.7
CDE08G0085 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 2.9e-60 235.3 144 75.0
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 2.9e-60 235.3 144 77.1
Hund21306 Selenicereus undatus HOM05D004767 ORTHO05D005674 2.9e-60 235.3 144 78.5
GSVIVG01020926001 Vitis vinifera HOM05D004767 ORTHO05D005674 3.8e-60 235.0 145 80.0
Sed0012135 Sechium edule HOM05D004767 ORTHO05D005674 6.6e-60 234.2 144 77.8
Thecc.01G130700 Theobroma cacao HOM05D004767 ORTHO05D005674 6.6e-60 234.2 143 79.7
QL10p048860 Quercus lobata HOM05D004767 ORTHO05D005674 1.1e-59 233.4 144 77.1
CDE02G0197 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 1.5e-59 233.0 144 74.3
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 1.5e-59 233.0 144 75.7
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 1.5e-59 233.0 144 76.4
Nitab4.5_0006401g0010 Nicotiana tabacum HOM05D004767 ORTHO05D005674 1.9e-59 232.6 144 75.7
SalBow2G0232 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.9e-59 232.6 147 74.1
COL.COLO4_35713 Corchorus olitorius HOM05D004767 ORTHO05D005674 2.5e-59 232.3 144 76.4
HanXRQChr15g0489741 Helianthus annuus HOM05D004767 ORTHO05D005674 4.3e-59 231.5 144 75.0
PGSC0003DMG400003462 Solanum tuberosum HOM05D004767 ORTHO05D005674 5.6e-59 231.1 144 74.3
Duzib264G0649 Durio zibethinus HOM05D004767 ORTHO05D005674 7.3e-59 230.7 143 78.3
Sopen02g012180 Solanum pennellii HOM05D004767 ORTHO05D005674 7.3e-59 230.7 144 74.3
Solyc02g038750.3 Solanum lycopersicum HOM05D004767 ORTHO05D005674 2.1e-58 229.2 144 73.6
Gohir.A05G385700 Gossypium hirsutum HOM05D004767 ORTHO05D005674 2.8e-58 228.8 143 77.6
Gohir.D04G022900 Gossypium hirsutum HOM05D004767 ORTHO05D005674 2.8e-58 228.8 143 77.6
Gorai.012G034000 Gossypium raimondii HOM05D004767 ORTHO05D005674 2.8e-58 228.8 143 77.6
Migut.B00408 Erythranthe guttata HOM05D004767 ORTHO05D005674 4.7e-58 228.0 144 72.2
Aqoxy6G02991 Aquilegia oxysepala HOM05D004767 ORTHO05D005674 1.4e-57 226.5 145 74.5
Manes.02G116500 Manihot esculenta HOM05D004767 ORTHO05D005674 1.4e-57 226.5 144 73.6
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 1.8e-57 226.1 144 75.7
THA.LOC104820618 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 1.8e-57 226.1 144 74.3
COL.COLO4_38041 Corchorus olitorius HOM05D004767 ORTHO05D005674 2.3e-57 225.7 142 76.1
Rhsim08G0026000 Rhododendron simsii HOM05D004767 ORTHO05D005674 3.0e-57 225.3 152 69.7
EL10Ac3g07307 Beta vulgaris HOM05D004767 ORTHO05D005674 4.0e-57 224.9 144 72.9
PSO017G2362 Papaver somniferum HOM05D004767 ORTHO05D005674 6.8e-57 224.2 144 73.6
DCAR_019301 Daucus carota HOM05D004767 ORTHO05D005674 1.2e-56 223.4 151 70.9
ECA233G4977 Erigeron canadensis HOM05D004767 ORTHO05D005674 1.5e-56 223.0 144 72.2
THA.LOC104816808 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 3.4e-56 221.9 144 71.5
HPP92_003941 Vanilla planifolia HOM05D004767 ORTHO05D005674 3.4e-56 221.9 144 71.5
Lsat_1_v5_gn_8_114040 Lactuca sativa HOM05D004767 ORTHO05D005674 4.4e-56 221.5 144 71.5
Os07g0660700 Oryza sativa ssp. japonica HOM05D004767 ORTHO05D005674 5.7e-56 221.1 139 76.3
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 2.9e-55 218.8 142 71.1
Carub.0004s1593 Capsella rubella HOM05D004767 ORTHO05D005674 2.9e-55 218.8 142 71.8
BcaC02g11487 Brassica carinata HOM05D004767 ORTHO05D005674 4.9e-55 218.0 142 71.8
C04p14860 Brassica napus HOM05D004767 ORTHO05D005674 4.9e-55 218.0 142 71.8
EL10Ac8g19950 Beta vulgaris HOM05D004767 ORTHO05D005674 8.3e-55 217.2 144 70.1
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 8.3e-55 217.2 144 72.2
Zm00001eb349300 Zea mays HOM05D004767 ORTHO05D005674 1.1e-54 216.9 144 70.8
AUR62012542 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.4e-54 216.5 144 69.4
A05p11370 Brassica napus HOM05D004767 ORTHO05D005674 1.8e-54 216.1 142 71.1
BolC4t23059H Brassica oleracea HOM05D004767 ORTHO05D005674 1.8e-54 216.1 142 71.1
BraA05t20086Z Brassica rapa HOM05D004767 ORTHO05D005674 1.8e-54 216.1 142 71.1
CARHR128360 Cardamine hirsuta HOM05D004767 ORTHO05D005674 1.8e-54 216.1 142 69.7
BcaB02g09562 Brassica carinata HOM05D004767 ORTHO05D005674 5.4e-54 214.5 142 70.4
Thhalv10016919m.g Eutrema salsugineum HOM05D004767 ORTHO05D005674 7.0e-54 214.2 142 69.7
Hma1.2p1_0085F.1_g044390 Hydrangea macrophylla HOM05D004767 ORTHO05D005674 7.0e-54 214.2 125 80.0
AT2G34260 Arabidopsis thaliana HOM05D004767 ORTHO05D005674 9.2e-54 213.8 142 69.7
Cpa.g.sc365.7 Carica papaya HOM05D004767 ORTHO05D005674 1.6e-53 213.0 142 71.1
Sp4g16550 Schrenkiella parvula HOM05D004767 ORTHO05D005674 1.6e-53 213.0 142 70.4
BcaB06g28745 Brassica carinata HOM05D004767 ORTHO05D005674 3.5e-53 211.8 142 69.0
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 7.8e-53 210.7 141 70.2
Actinidia28754 Actinidia chinensis HOM05D004767 ORTHO05D005674 1.7e-52 209.5 127 77.2
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 8.6e-52 207.2 142 68.3
unitig_61.g26025 Utricularia gibba HOM05D004767 ORTHO05D005674 1.1e-51 206.8 142 69.7
vmacro18476 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 1.5e-51 206.5 125 75.2
Medtr1g076780 Medicago truncatula HOM05D004767 ORTHO05D005674 3.3e-51 205.3 110 89.1
Haze_03669 Corylus avellana HOM05D004767 ORTHO05D005674 3.7e-47 191.8 148 66.9
MELO3C026614.2 Cucumis melo HOM05D004767 ORTHO05D005674 3.2e-46 188.7 144 63.9
Mapoly0040s0029 Marchantia polymorpha HOM05D004767 ORTHO05D005674 5.4e-46 188.0 141 63.8
RcHm_v2.0_Chr4g0410631 Rosa chinensis HOM05D004767 ORTHO05D005674 1.6e-45 186.4 144 67.4
PSO170G0853 Papaver somniferum HOM05D004767 ORTHO05D005674 3.5e-45 185.3 144 63.9
Psat6g227720 Pisum sativum HOM05D004767 ORTHO05D005674 6.0e-45 184.5 121 74.4
Phvul.005G015600 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.0e-44 183.7 147 64.6
Phvul.005G015700 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.0e-44 183.7 148 66.2
Cfa006688 Carpinus fangiana HOM05D004767 ORTHO05D005674 3.9e-44 181.8 149 65.1
Psat6g227760 Pisum sativum HOM05D004767 ORTHO05D005674 5.6e-43 177.9 118 74.6
CSS0049016 Camellia sinensis var. sinensis HOM05D004767 ORTHO05D005674 2.1e-42 176.0 110 72.7
AagrBONN_evm.TU.Sc2ySwM_344.1647 Anthoceros agrestis HOM05D004767 ORTHO05D005674 1.2e-40 170.2 142 56.3
CsaV3_3G043180 Cucumis sativus L. HOM05D004767 ORTHO05D005674 2.0e-40 169.5 113 69.0
SMO364G0336 Selaginella moellendorffii HOM05D004767 ORTHO05D005674 2.6e-40 169.1 139 56.8
AL4G30210 Arabidopsis lyrata HOM05D004767 ORTHO05D005674 9.9e-40 167.2 131 61.1
CBR_g37537 Chara braunii HOM05D004767 ORTHO05D005674 2.9e-39 165.6 141 53.9
ATR0680G041 Amborella trichopoda HOM05D004767 ORTHO05D005674 1.6e-37 159.8 110 67.3
Ah.09g236950 Amaranthus hybridus HOM05D004767 ORTHO05D005674 2.1e-37 159.5 117 62.4
A04p26260 Brassica napus HOM05D004767 ORTHO05D005674 8.1e-34 147.5 92 72.8
Glyma.11G099900 Glycine max HOM05D004767 ORTHO05D005674 9.9e-32 140.6 144 55.6
MCO07G146 Micromonas commoda HOM05D004767 ORTHO05D005674 3.0e-28 129.0 152 46.1
QL07p001807 Quercus lobata HOM05D004767 ORTHO05D005674 5.6e-27 124.8 79 72.2
Sabra17G0099200 Salix brachista HOM05D004767 ORTHO05D005674 2.4e-25 119.4 76 76.3
Pp3c5_17020 Physcomitrium patens HOM05D004767 ORTHO05D005674 5.1e-20 101.7 71 69.0
BolC4t27833H Brassica oleracea HOM05D004767 ORTHO05D005674 4.3e-19 98.6 120 46.7
PRCOL_00000722 Prasinoderma coloniale HOM05D004767 ORTHO05D005674 4.3e-19 98.6 113 50.4
AUR62014654 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.3e-18 97.1 144 42.4
AUR62044118 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.3e-18 97.1 144 42.4
SEGI_27353 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 3.1e-17 92.4 63 63.5
Cre02.g113250 Chlamydomonas reinhardtii HOM05D004767 ORTHO05D005674 1.7e-15 86.7 125 39.2
Lsat_1_v5_gn_6_103760 Lactuca sativa HOM05D004767 ORTHO05D005674 1.4e-14 83.6 58 65.5
Phvul.011G028300 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.9e-14 83.2 46 80.4
SHI13610 Sapria himalayana HOM05D004767 ORTHO05D005674 2.1e-13 79.7 132 38.6
Oeu036465.1 Olea europaea HOM05D004767 ORTHO05D005674 1.0e-12 77.4 47 80.9
vmacro07517 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 1.3e-12 77.0 54 68.5
Actinidia09820 Actinidia chinensis HOM05D004767 ORTHO05D005674 4.3e-11 72.0 50 68.0
SEGI_20710 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 4.8e-10 68.6 45 68.9
RcHm_v2.0_Chr5g0032061 Rosa chinensis HOM05D004767 ORTHO05D005674 7.6e-08 61.2 35 68.6
SEGI_28078 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 2.2e-07 59.7 36 80.6
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 4.9e-07 58.5 118 30.5
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 1.4e-06 57.0 115 29.6
Lj6C229G10 Lonicera japonica HOM05D005323 ORTHO05D006820 2.4e-06 56.2 145 27.6


User provided reference genes

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