Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 0.0e+00 1339.3 755 100.0
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 5.0e-281 971.1 776 73.1
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 2.7e-279 965.3 783 73.3
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 6.5e-273 944.1 737 73.5
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 2.8e-268 928.7 784 71.7
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 2.0e-266 922.5 791 69.4
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 1.6e-263 912.9 785 70.6
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 4.1e-259 898.3 774 69.1
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 7.0e-259 897.5 780 70.0
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 2.3e-249 865.9 809 66.0
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 8.6e-249 864.0 774 67.4
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 1.2e-242 843.6 791 65.6
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 3.9e-241 838.6 813 66.1
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 1.8e-185 653.7 445 83.1
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 6.9e-174 615.1 812 52.0
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 6.7e-169 598.6 814 51.0
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 2.2e-164 583.6 823 48.8
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 3.3e-160 569.7 831 49.0
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.8e-159 566.6 810 50.0
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.6e-157 560.1 792 49.6
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 4.5e-157 559.3 790 50.0
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 1.7e-151 540.8 823 48.0
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 8.2e-151 538.5 811 48.1
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 3.1e-150 536.6 815 49.3
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 1.1e-147 528.1 792 49.0
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.2e-147 526.6 808 48.0
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.1e-146 522.3 805 48.1
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 8.8e-145 518.5 818 47.1
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 9.1e-142 508.4 810 47.2
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-140 504.6 818 47.1
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 3.8e-140 503.1 815 46.1
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 5.0e-140 502.7 293 96.2
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.5e-139 501.1 800 45.1
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.5e-139 500.4 818 46.6
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.2e-138 498.0 810 46.7
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 6.8e-137 492.3 846 44.8
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 1.2e-136 491.5 830 45.7
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 3.4e-136 490.0 991 41.0
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 6.3e-135 485.7 793 45.0
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.1e-134 483.4 815 44.2
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.2e-134 481.9 794 46.3
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.3e-132 478.0 802 45.6
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 2.3e-132 477.2 642 51.1
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 8.6e-132 475.3 897 42.1
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.5e-131 474.6 809 45.2
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 2.5e-131 473.8 823 43.7
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 6.1e-130 469.2 791 45.4
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 6.1e-130 469.2 808 45.9
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 1.0e-129 468.4 814 44.8
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 1.4e-129 468.0 759 46.4
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.2e-129 466.1 802 45.1
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 1.2e-128 464.9 828 43.6
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 1.7e-127 461.1 804 43.7
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 4.9e-127 459.5 827 43.5
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.2e-126 455.3 801 44.8
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 1.7e-124 451.1 816 44.0
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 6.6e-124 449.1 439 63.1
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 2.5e-123 447.2 815 43.3
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 5.6e-123 446.0 831 43.9
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 2.1e-122 444.1 795 44.8
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 6.8e-121 439.1 789 43.3
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 6.8e-121 439.1 844 42.4
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 2.9e-119 433.7 793 43.8
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 4.9e-119 433.0 809 42.4
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 8.3e-119 432.2 788 43.0
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 1.4e-118 431.4 809 42.4
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 1.9e-118 431.0 819 43.5
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 2.4e-118 430.6 785 42.7
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.4e-118 430.6 845 41.4
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 2.7e-117 427.2 789 43.6
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 1.1e-115 421.8 821 42.5
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 7.3e-115 419.1 795 41.6
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 6.2e-114 416.0 846 40.8
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 2.0e-112 411.0 783 42.4
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 2.0e-112 411.0 422 59.7
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 4.9e-111 406.4 820 41.1
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 9.2e-110 402.1 621 47.7
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.6e-109 401.4 777 41.8
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 9.5e-107 392.1 820 42.3
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 1.2e-106 391.7 815 39.8
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.4e-105 388.3 777 40.2
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 3.1e-105 387.1 819 40.7
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 5.2e-105 386.3 371 62.3
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 3.4e-104 383.6 798 40.5
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 5.8e-104 382.9 820 40.9
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 4.1e-102 376.7 840 38.8
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 4.1e-102 376.7 789 41.1
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 7.1e-102 375.9 792 40.4
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 1.6e-101 374.8 816 41.4
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 6.0e-101 372.9 818 39.1
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 1.7e-100 371.3 794 39.5
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.1e-99 368.6 790 39.9
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 4.3e-99 366.7 689 41.4
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 3.6e-98 363.6 750 40.1
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 6.2e-98 362.8 769 41.2
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 5.2e-97 359.8 743 41.0
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 5.8e-96 356.3 735 40.3
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 5.4e-94 349.7 850 38.7
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 1.3e-92 345.1 497 47.1
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 3.6e-90 337.0 790 39.1
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 4.8e-90 336.7 783 37.8
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 1.4e-86 325.1 507 46.2
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 7.1e-86 322.8 597 42.2
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 9.3e-86 322.4 801 37.3
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 6.0e-85 319.7 798 35.5
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 7.9e-85 319.3 703 40.7
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 5.1e-84 316.6 525 44.6
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 5.1e-84 316.6 764 38.1
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 1.3e-82 312.0 551 43.7
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 1.6e-82 311.6 805 37.4
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 2.1e-82 311.2 799 37.3
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 8.1e-82 309.3 571 42.9
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 2.4e-81 307.8 488 45.9
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 4.5e-80 303.5 778 36.6
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 1.3e-79 302.0 781 35.7
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 1.7e-79 301.6 676 37.9
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 3.8e-79 300.4 598 40.6
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 7.1e-78 296.2 783 35.4
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 2.7e-77 294.3 838 34.2
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 3.5e-77 293.9 657 38.2
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 6.7e-76 289.7 780 36.4
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 1.1e-75 288.9 764 36.5
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 1.5e-75 288.5 809 35.5
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 5.3e-73 280.0 567 40.2
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 2.0e-72 278.1 623 38.2
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 3.4e-72 277.3 548 41.4
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 5.8e-72 276.6 453 45.0
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 5.8e-72 276.6 456 45.4
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 7.6e-72 276.2 783 35.6
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 5.5e-70 270.0 815 35.7
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 5.5e-70 270.0 787 36.2
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 1.6e-69 268.5 787 34.1
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 8.7e-68 262.7 495 39.4
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 4.8e-66 256.9 788 34.9
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.1e-65 254.2 605 38.7
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 5.9e-56 223.4 578 37.7
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 2.5e-46 191.4 422 37.2
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 3.2e-46 191.0 359 40.4
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 4.2e-46 190.7 420 38.1
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 9.4e-46 189.5 523 35.9
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 2.1e-45 188.3 419 37.7
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 1.6e-40 172.2 357 40.1
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 5.9e-40 170.2 179 55.3
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 7.7e-40 169.9 665 32.2
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 1.5e-35 155.6 113 69.9
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 1.1e-33 149.4 562 32.6
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 2.4e-33 148.3 387 36.7
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 1.2e-29 136.0 100 71.0
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 2.3e-28 131.7 139 57.6
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 6.8e-28 130.2 92 72.8
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.2e-27 129.4 400 32.8
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.5e-24 117.5 169 49.1
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-17 95.9 68 75.0
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.0e-16 92.0 76 64.5
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.9e-16 90.5 66 71.2
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.9e-15 88.2 62 74.2
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 3.8e-15 87.8 55 74.5
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.6e-15 87.0 62 74.2
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 6.6e-15 87.0 63 73.0
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 6.6e-15 87.0 76 59.2
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 1.5e-14 85.9 62 69.4
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 4.3e-14 84.3 143 37.8
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.3e-14 84.3 186 38.2
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.8e-13 81.6 56 76.8
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.7e-13 80.9 54 77.8
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.7e-13 80.9 55 76.4
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.8e-12 79.0 55 74.5
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.3e-12 78.6 55 74.5
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 2.3e-12 78.6 76 55.3
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 7.5e-11 73.6 51 76.5
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-10 72.0 50 74.0
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 2.9e-10 71.6 531 25.6
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 6.4e-10 70.5 50 72.0
Gohir.D04G051401 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.9e-09 68.9 63 69.8
Gohir.A02G090400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.2e-09 68.2 70 64.3
HPP92_026453 Vanilla planifolia HOM05D003628 ORTHO05D004253 5.4e-09 67.4 88 55.7
Gorai.004G113400 Gossypium raimondii HOM05D003628 ORTHO05D004253 9.2e-09 66.6 63 66.7
Gohir.D11G243366 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.2e-08 66.2 63 61.9
Gohir.D12G066350 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.0e-08 63.9 63 65.1
TPR.G8204 Trifolium pratense HOM05D000108 ORTHO05D022289 6.0e-08 63.9 40 85.0
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 3.0e-07 61.6 90 43.3
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.5e-06 59.3 39 74.4
CDE04G1765 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 4.3e-06 57.8 262 27.5
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.3e-06 57.8 39 71.8
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 7.3e-06 57.0 37 75.7


User provided reference genes

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