Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 2.7e-70 268.5 128 100.0
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 4.2e-31 138.3 75 82.7
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 1.6e-30 136.3 75 82.7
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 2.1e-30 136.0 75 84.0
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 2.7e-30 135.6 75 82.7
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 3.9e-29 131.7 75 80.0
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 2.0e-28 129.4 74 79.7
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 3.3e-28 128.6 75 78.7
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 3.3e-28 128.6 75 77.3
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 5.7e-28 127.9 74 78.4
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 2.8e-27 125.6 74 77.0
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 4.8e-27 124.8 75 76.0
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 9.1e-26 120.6 75 72.0
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 1.5e-25 119.8 75 73.3
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 1.5e-25 119.8 75 72.0
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 2.0e-25 119.4 75 72.0
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 2.6e-25 119.0 75 70.7
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 3.5e-25 118.6 75 72.0
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 4.5e-25 118.2 75 73.3
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 5.9e-25 117.9 75 73.3
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 5.9e-25 117.9 74 73.0
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 1.0e-24 117.1 74 71.6
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 1.0e-24 117.1 75 73.3
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 1.0e-24 117.1 76 68.4
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 1.3e-24 116.7 73 71.2
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 1.7e-24 116.3 74 70.3
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 1.7e-24 116.3 75 69.3
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 1.7e-24 116.3 75 70.7
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 1.7e-24 116.3 74 71.6
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 2.9e-24 115.5 73 74.0
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 3.8e-24 115.2 74 70.3
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 3.8e-24 115.2 74 70.3
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 3.8e-24 115.2 74 70.3
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 3.8e-24 115.2 75 68.0
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 3.8e-24 115.2 74 70.3
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.8e-24 115.2 74 70.3
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.8e-24 115.2 74 70.3
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 3.8e-24 115.2 75 69.3
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 5.0e-24 114.8 75 72.0
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 6.5e-24 114.4 74 71.6
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 6.5e-24 114.4 75 70.7
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 8.5e-24 114.0 75 69.3
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 8.5e-24 114.0 74 70.3
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 8.5e-24 114.0 74 70.3
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 8.5e-24 114.0 74 70.3
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 1.1e-23 113.6 74 70.3
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.1e-23 113.6 75 66.7
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 1.5e-23 113.2 75 69.3
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 1.5e-23 113.2 75 68.0
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 1.5e-23 113.2 74 68.9
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 1.9e-23 112.8 74 68.9
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 1.9e-23 112.8 74 68.9
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 1.9e-23 112.8 74 68.9
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 1.9e-23 112.8 75 68.0
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 2.5e-23 112.5 74 67.6
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 2.5e-23 112.5 74 70.3
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 2.5e-23 112.5 75 69.3
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 2.5e-23 112.5 75 68.0
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 2.5e-23 112.5 75 69.3
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 2.5e-23 112.5 74 67.6
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 3.2e-23 112.1 75 68.0
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 3.2e-23 112.1 75 69.3
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 4.2e-23 111.7 74 68.9
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 4.2e-23 111.7 74 67.6
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 4.2e-23 111.7 75 69.3
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 4.2e-23 111.7 75 68.0
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 4.2e-23 111.7 75 68.0
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 4.2e-23 111.7 74 67.6
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 5.5e-23 111.3 75 68.0
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 5.5e-23 111.3 74 67.6
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 7.2e-23 110.9 75 66.7
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.2e-22 110.2 75 68.0
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.2e-22 110.2 75 68.0
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 1.2e-22 110.2 75 68.0
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 1.2e-22 110.2 75 64.0
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 1.6e-22 109.8 74 67.6
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 2.7e-22 109.0 75 65.3
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 3.6e-22 108.6 75 66.7
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 3.6e-22 108.6 75 66.7
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 3.6e-22 108.6 75 68.0
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 3.6e-22 108.6 75 64.0
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 3.6e-22 108.6 74 67.6
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 4.7e-22 108.2 74 66.2
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 4.7e-22 108.2 75 65.3
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 4.7e-22 108.2 75 65.3
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 4.7e-22 108.2 75 66.7
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 4.7e-22 108.2 75 66.7
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 6.1e-22 107.8 109 52.3
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 8.0e-22 107.5 75 64.0
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 1.0e-21 107.1 74 66.2
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 1.0e-21 107.1 75 62.7
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 1.0e-21 107.1 74 68.9
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 1.8e-21 106.3 75 64.0
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 1.8e-21 106.3 75 64.0
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 4.0e-21 105.1 74 66.2
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 4.0e-21 105.1 75 64.0
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 5.2e-21 104.8 74 67.6
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 5.2e-21 104.8 75 64.0
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 6.7e-21 104.4 72 66.7
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 8.8e-21 104.0 75 62.7
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 8.8e-21 104.0 75 62.7
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 1.5e-20 103.2 75 64.0
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 2.0e-20 102.8 75 62.7
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 3.3e-20 102.1 69 65.2
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 2.8e-19 99.0 72 63.9
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 1.4e-18 96.7 73 61.6
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 3.1e-18 95.5 73 56.2
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 3.1e-18 95.5 75 60.0
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 5.3e-18 94.7 74 62.2
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 2.6e-17 92.4 98 50.0
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 2.9e-16 89.0 63 61.9
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 1.1e-15 87.0 66 60.6
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 1.2e-14 83.6 43 81.4
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 1.0e-13 80.5 45 71.1
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 1.8e-13 79.7 73 46.6
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 3.0e-13 79.0 65 56.9
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 5.2e-13 78.2 70 58.6
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 2.0e-12 76.3 45 71.1
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.1e-10 70.5 75 53.3
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 1.4e-10 70.1 73 46.6


User provided reference genes

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