Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G071100 Glycine max HOM05D000003 ORTHO05D000004 3.4e-61 238.0 110 100.0
Glyma.06G081700 Glycine max HOM05D002545 ORTHO05D035963 3.5e-18 95.1 82 54.9
Glyma.05G198600 Glycine max HOM05D007034 ORTHO05D008665 1.1e-14 83.6 69 52.2
TWI39G0070 Tripterygium wilfordii HOM05D000003 ORTHO05D002259 1.9e-11 72.8 102 36.3
TPR.G32089 Trifolium pratense HOM05D000003 ORTHO05D000004 2.1e-10 69.3 77 42.9
TPR.G25618 Trifolium pratense HOM05D000003 ORTHO05D000004 3.0e-09 65.5 90 37.8
MD02G1293300 Malus domestica HOM05D000003 ORTHO05D000004 5.1e-09 64.7 80 37.5
MBI14_g10150_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 8.7e-09 63.9 107 32.7
Aqoxy1G02819 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.5e-08 63.2 83 39.8
Ah.06g185410 Amaranthus hybridus HOM05D000003 ORTHO05D000004 1.9e-08 62.8 79 35.4
MD06G1023000 Malus domestica HOM05D000003 ORTHO05D000004 2.5e-08 62.4 98 32.7
Aqoxy1G02814 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.3e-08 62.0 83 37.3
Thecc.05G228200 Theobroma cacao HOM05D000003 ORTHO05D000004 3.3e-08 62.0 79 32.9
TWI36G1756 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.3e-08 61.6 76 38.2
Cpa.g.sc28.147 Carica papaya HOM05D000003 ORTHO05D000004 1.3e-07 60.1 84 39.3
LjContig00081g0021034 Lotus japonicus HOM05D002545 ORTHO05D002335 1.3e-07 60.1 79 36.7
Phvul.003G076100 Phaseolus vulgaris HOM05D000003 ORTHO05D002335 1.6e-07 59.7 68 39.7
Atru.chr1.3207 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-07 58.9 72 38.9
arahy.Tifrunner.gnm1.ann1.8AAX84 Arachis hypogaea HOM05D000003 ORTHO05D000004 3.6e-07 58.5 79 35.4
COL.COLO4_11923 Corchorus olitorius HOM05D000003 ORTHO05D000004 6.2e-07 57.8 65 40.0
CSS0028483 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.1e-06 57.0 87 37.9
Cpa.g.sc1998.1 Carica papaya HOM05D000003 ORTHO05D000004 1.1e-06 57.0 111 33.3
Atru.chr11.644 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-06 56.2 88 31.8
Cpa.g.sc3.188 Carica papaya HOM05D003018 ORTHO05D003402 1.8e-06 56.2 86 33.7
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 2.4e-06 55.8 89 33.7
MBI19_g24051_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 3.1e-06 55.5 73 38.4
Atru.chr2.1999 Acer truncatum HOM05D000003 ORTHO05D002259 4.0e-06 55.1 74 37.8
Cpa.g.sc1.274 Carica papaya HOM05D000003 ORTHO05D000004 4.0e-06 55.1 70 40.0
Cpa.g.sc83.78 Carica papaya HOM05D000003 ORTHO05D000004 4.0e-06 55.1 88 36.4
CSS0000102 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D033878 5.3e-06 54.7 80 35.0
Potri.018G042350 Populus trichocarpa HOM05D000003 ORTHO05D000004 5.3e-06 54.7 89 34.8
Aqoxy2G02181 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 6.9e-06 54.3 86 33.7
Aqoxy5G04099 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 6.9e-06 54.3 78 37.2
Cpa.g.sc140.5 Carica papaya HOM05D000003 ORTHO05D000004 6.9e-06 54.3 71 38.0
Cpa.g.sc35.64 Carica papaya HOM05D000003 ORTHO05D000004 6.9e-06 54.3 68 41.2


User provided reference genes

Program Settings