Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 0.0e+00 1255.4 700 100.0
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 9.2e-306 1053.1 703 83.9
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 9.9e-284 979.9 646 83.7
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 1.9e-282 975.7 702 73.9
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 5.4e-282 974.2 702 73.2
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 3.7e-278 961.4 700 77.9
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 1.0e-275 953.4 700 75.9
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 6.0e-273 944.1 704 71.6
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 5.0e-267 924.5 701 74.9
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 1.1e-261 906.7 643 74.2
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 5.7e-239 831.2 468 91.7
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 2.4e-237 825.9 657 67.9
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 2.3e-219 766.1 642 65.3
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 7.3e-218 761.1 705 60.4
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.0e-216 757.3 702 58.1
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 4.0e-216 755.4 701 58.6
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 3.4e-215 752.3 695 62.2
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 4.4e-215 751.9 692 59.8
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 7.5e-215 751.1 693 58.4
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.4e-213 746.9 691 59.3
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 1.6e-212 743.4 710 62.7
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 2.7e-212 742.7 694 62.5
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 7.8e-212 741.1 693 58.0
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 2.3e-211 739.6 694 58.1
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 6.2e-209 731.5 696 57.0
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 1.0e-208 730.7 666 59.0
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 5.2e-208 728.4 696 59.1
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.2e-207 727.2 692 56.9
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.5e-207 726.9 690 57.4
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 5.8e-207 724.9 751 56.9
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.7e-206 723.4 696 59.3
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 4.6e-204 715.3 783 53.9
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 1.8e-200 703.4 699 57.8
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.9e-197 693.3 675 58.4
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.0e-195 687.6 728 56.3
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.3e-195 686.4 718 56.4
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 3.0e-195 686.0 711 56.7
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 3.9e-195 685.6 711 56.7
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 3.9e-195 685.6 687 56.3
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 7.3e-194 681.4 695 57.1
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 9.5e-194 681.0 728 55.9
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 1.6e-193 680.2 722 54.4
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 2.8e-193 679.5 702 53.4
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 6.2e-193 678.3 696 58.6
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 1.1e-192 677.6 702 53.3
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 4.0e-192 675.6 700 51.9
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 5.2e-192 675.2 645 58.3
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 2.6e-191 672.9 733 56.3
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 2.6e-191 672.9 684 53.9
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 4.4e-191 672.2 694 55.5
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 4.4e-191 672.2 672 53.6
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 5.8e-191 671.8 700 54.0
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 7.6e-191 671.4 689 55.6
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 9.9e-191 671.0 694 55.3
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.9e-189 666.8 695 53.8
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 7.1e-189 664.8 694 55.3
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 7.1e-189 664.8 695 53.7
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 1.2e-188 664.1 679 53.9
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 1.6e-188 663.7 696 53.9
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 2.7e-188 662.9 690 57.1
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 4.6e-188 662.1 622 57.6
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 1.9e-186 656.8 705 53.0
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 1.9e-186 656.8 699 54.9
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 2.5e-186 656.4 699 51.6
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 9.6e-186 654.4 695 54.0
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.2e-185 654.1 698 56.9
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 5.2e-184 648.7 713 51.9
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 6.8e-184 648.3 697 52.1
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 6.8e-184 648.3 681 52.3
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 3.4e-183 646.0 726 51.8
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 7.6e-183 644.8 694 51.9
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 2.2e-182 643.3 706 52.7
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 1.6e-180 637.1 695 51.7
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 2.1e-180 636.7 684 51.8
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 3.5e-180 636.0 716 50.1
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 6.0e-180 635.2 706 52.1
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 6.0e-180 635.2 675 55.0
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 1.0e-179 634.4 702 50.9
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 1.7e-179 633.6 577 62.7
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 3.0e-179 632.9 684 51.5
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 3.9e-179 632.5 689 51.4
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 3.9e-179 632.5 684 51.6
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 6.6e-179 631.7 706 51.0
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 8.7e-179 631.3 704 53.4
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 2.5e-178 629.8 700 52.0
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 3.3e-178 629.4 697 51.9
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 7.3e-178 628.2 690 53.5
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 2.1e-177 626.7 690 54.5
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 4.8e-177 625.5 675 52.9
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.8e-176 623.6 709 52.8
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 5.3e-176 622.1 664 50.6
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 2.6e-175 619.8 697 53.9
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 5.8e-175 618.6 639 54.6
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 7.6e-175 618.2 697 53.8
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 2.2e-174 616.7 721 50.1
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 8.4e-174 614.8 672 51.8
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 1.3e-171 607.4 695 52.4
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 2.3e-171 606.7 704 53.4
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 3.0e-171 606.3 695 52.2
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 7.4e-170 601.7 668 50.4
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 7.4e-170 601.7 683 50.1
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.6e-169 600.5 683 50.8
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.1e-168 597.8 663 48.3
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 2.4e-168 596.7 668 50.7
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 1.4e-165 587.4 676 50.9
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 2.4e-165 586.6 652 51.5
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 2.4e-165 586.6 683 48.9
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 5.5e-165 585.5 692 54.6
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 1.0e-163 581.3 633 53.2
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.8e-163 580.5 662 49.8
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.3e-163 580.1 686 48.7
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 6.7e-163 578.6 694 49.9
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 7.4e-162 575.1 610 56.7
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 2.8e-161 573.2 645 50.2
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 1.5e-159 567.4 662 51.8
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 2.0e-159 567.0 689 46.2
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 2.6e-159 566.6 600 57.0
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 7.6e-159 565.1 678 47.8
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 1.0e-158 564.7 668 50.7
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 2.2e-158 563.5 697 47.9
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 2.5e-157 560.1 682 48.1
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 3.2e-157 559.7 675 48.9
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 3.0e-155 553.1 661 48.7
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 7.2e-149 531.9 670 46.3
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 1.3e-147 527.7 723 44.7
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.9e-146 523.9 677 47.7
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 4.8e-145 519.2 674 44.5
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.0e-143 513.8 511 55.4
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 5.5e-141 505.8 722 48.1
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 1.9e-133 480.7 701 42.7
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 9.7e-130 468.4 671 46.9
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 6.5e-126 455.7 504 51.4
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 3.5e-119 433.3 503 51.9
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 1.0e-118 431.8 519 48.7
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 8.5e-118 428.7 424 58.3
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 5.9e-111 406.0 742 38.3
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 5.9e-103 379.4 667 36.7
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.3e-102 377.5 704 35.2
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 3.8e-102 376.7 410 52.9
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.3e-99 367.5 709 34.7
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 3.4e-98 363.6 672 36.0
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 8.3e-97 359.0 652 36.3
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 8.3e-97 359.0 671 35.0
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.8e-96 357.8 722 35.2
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 7.0e-96 355.9 672 34.5
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.6e-87 328.2 751 35.7
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 1.5e-85 321.6 671 35.3
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 5.6e-85 319.7 583 37.0
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 5.2e-83 313.2 648 35.5
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 4.4e-82 310.1 808 31.4
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 8.3e-81 305.8 519 38.3
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.1e-79 301.2 214 71.0
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 1.9e-77 294.7 745 31.4
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 2.1e-76 291.2 259 60.2
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 2.8e-76 290.8 209 69.4
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.1e-75 288.9 517 36.6
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 8.9e-75 285.8 545 38.7
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 1.2e-71 275.4 330 45.5
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.1e-59 235.7 526 31.4
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 7.6e-50 203.0 333 37.2
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 3.4e-34 151.0 235 40.4
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 2.1e-23 115.2 188 38.3
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 6.7e-22 110.2 65 75.4
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 9.7e-21 106.3 67 76.1
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 1.3e-20 105.9 71 66.2
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.7e-20 105.5 111 53.2
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 4.1e-19 100.9 93 59.1
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 2.8e-12 78.2 161 38.5
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 7.7e-10 70.1 121 38.8
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 6.5e-09 67.0 53 62.3
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 2.5e-08 65.1 58 55.2
DCAR_019433 Daucus carota HOM05D003996 ORTHO05D004665 5.5e-08 63.9 55 61.8
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 4.7e-07 60.8 49 61.2
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 6.1e-07 60.5 55 52.7


User provided reference genes

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