Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1268.8 649 100.0
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1110.5 644 89.0
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 6.6e-298 1026.9 640 83.1
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 2.8e-288 995.0 638 80.7
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 8.0e-288 993.4 640 80.5
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 1.2e-283 979.5 715 72.9
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 3.0e-282 974.9 642 79.8
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 8.1e-280 966.8 651 78.2
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 7.6e-278 960.3 641 78.6
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 5.8e-270 934.1 642 76.8
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 9.9e-262 906.7 641 74.6
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 1.6e-259 899.4 642 72.3
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 1.7e-258 896.0 642 73.1
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 2.8e-256 888.6 623 72.9
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 1.1e-255 886.7 640 73.0
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 1.7e-253 879.4 644 71.6
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 2.2e-253 879.0 643 70.1
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 2.5e-249 865.5 654 68.7
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 5.6e-249 864.4 648 70.4
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 5.6e-249 864.4 637 70.5
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 1.3e-248 863.2 645 69.9
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 1.4e-247 859.8 644 69.1
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 2.2e-245 852.4 644 68.9
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 2.9e-245 852.0 645 68.4
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 4.9e-245 851.3 642 69.6
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 4.9e-245 851.3 641 69.4
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 5.5e-244 847.8 636 69.8
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 9.3e-244 847.0 642 68.7
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 3.5e-243 845.1 642 68.7
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 1.3e-242 843.2 641 69.3
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 3.9e-242 841.6 646 68.6
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 5.1e-242 841.3 642 68.4
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 1.1e-241 840.1 641 69.6
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 2.5e-241 839.0 642 68.2
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 2.5e-241 839.0 647 68.9
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 3.3e-241 838.6 643 68.4
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 9.6e-241 837.0 648 68.2
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 1.4e-239 833.2 638 68.3
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 6.9e-239 830.9 648 67.1
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 5.8e-238 827.8 646 67.8
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 5.8e-238 827.8 639 68.7
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 1.7e-237 826.2 643 68.6
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 2.9e-237 825.5 644 68.2
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 2.9e-237 825.5 643 68.0
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 3.8e-237 825.1 642 68.4
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 5.0e-237 824.7 640 67.8
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.4e-236 823.2 650 66.0
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 1.4e-236 823.2 644 66.6
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 3.2e-236 822.0 624 69.2
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 5.5e-236 821.2 640 68.3
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 7.9e-235 817.4 651 65.7
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 1.0e-234 817.0 651 65.6
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 3.9e-234 815.1 642 67.3
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 1.1e-233 813.5 652 66.0
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 1.1e-233 813.5 645 67.9
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 3.3e-233 812.0 596 71.3
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 8.2e-232 807.4 646 66.9
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 2.4e-231 805.8 645 67.3
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 2.4e-231 805.8 646 65.6
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 1.2e-230 803.5 641 66.1
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 2.2e-229 799.3 648 67.4
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 6.5e-229 797.7 643 65.6
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 9.4e-228 793.9 654 63.1
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 6.1e-227 791.2 644 66.0
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 1.0e-226 790.4 643 65.9
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 1.0e-226 790.4 644 65.8
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 1.8e-226 789.6 643 65.9
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 2.3e-226 789.3 643 65.8
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 2.3e-226 789.3 643 65.8
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 2.0e-225 786.2 652 65.3
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 2.0e-225 786.2 643 65.2
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 2.0e-225 786.2 623 65.2
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 5.7e-225 784.6 662 63.6
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 1.3e-224 783.5 643 65.6
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 2.2e-224 782.7 643 64.9
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 4.8e-224 781.6 643 64.5
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 4.8e-224 781.6 645 64.0
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 1.1e-223 780.4 644 65.2
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 3.1e-223 778.9 635 63.3
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 3.1e-223 778.9 641 64.9
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 1.2e-222 776.9 648 63.6
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 2.6e-222 775.8 643 64.4
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 4.5e-222 775.0 645 64.0
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 1.3e-221 773.5 646 62.7
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 2.9e-221 772.3 666 62.9
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 8.5e-221 770.8 659 61.5
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 1.1e-220 770.4 648 63.3
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 3.2e-220 768.8 647 61.2
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 5.5e-220 768.1 673 62.3
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 2.7e-219 765.8 648 65.4
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 4.7e-219 765.0 649 62.9
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 4.7e-219 765.0 601 67.9
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 6.7e-218 761.1 663 59.6
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 6.7e-218 761.1 650 60.2
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 1.5e-217 760.0 643 62.8
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 2.0e-217 759.6 683 60.0
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 3.3e-217 758.8 645 62.3
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 2.8e-216 755.7 625 63.7
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 2.8e-216 755.7 666 62.0
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 3.1e-215 752.3 624 63.0
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 3.8e-213 745.3 636 64.8
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 1.1e-212 743.8 631 60.5
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 1.5e-212 743.4 636 64.5
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 4.7e-211 738.4 642 62.5
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 1.0e-210 737.3 656 60.2
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 3.0e-210 735.7 639 60.1
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 8.2e-208 727.6 677 57.9
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 3.8e-205 718.8 636 63.4
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 1.8e-202 709.9 770 53.1
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 1.8e-202 709.9 646 61.9
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 3.0e-202 709.1 652 59.7
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 5.7e-201 704.9 652 59.4
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 7.5e-201 704.5 782 52.0
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 2.8e-200 702.6 652 59.2
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 2.0e-198 696.4 641 59.3
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 4.7e-195 685.3 633 58.0
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 7.5e-193 677.9 639 57.9
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 1.3e-189 667.2 643 57.4
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 4.0e-186 655.6 647 55.0
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 2.7e-182 642.9 659 53.4
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 2.3e-181 639.8 638 54.2
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 4.3e-180 635.6 634 54.7
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 2.3e-178 629.8 656 53.8
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 3.1e-178 629.4 583 58.0
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 2.0e-177 626.7 656 53.7
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 1.4e-175 620.5 572 59.3
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 9.3e-151 538.1 562 52.8
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 2.5e-140 503.4 532 53.4
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 2.4e-135 486.9 614 48.9
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 2.5e-116 423.7 654 42.4
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 7.4e-116 422.2 670 41.0
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 9.4e-103 378.6 605 39.7
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.8e-98 364.4 642 37.1
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 9.1e-98 362.1 641 36.8
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 4.8e-91 339.7 834 33.3
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.2e-76 292.0 515 35.7
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 3.6e-70 270.4 211 65.9
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 1.7e-43 181.8 165 61.8
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 2.2e-43 181.4 163 63.8
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 7.1e-42 176.4 192 57.3
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 2.4e-29 134.8 94 74.5
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 8.4e-27 126.3 85 72.9
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 4.2e-26 124.0 80 73.8
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 1.2e-25 122.5 153 50.3
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 1.0e-24 119.4 111 61.3
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 1.4e-21 109.0 98 56.1
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 1.4e-21 109.0 98 56.1
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 6.9e-21 106.7 80 65.0
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 2.9e-19 101.3 112 50.0
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 1.4e-18 99.0 196 39.8
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 8.2e-14 83.2 193 32.6
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 2.0e-12 78.6 80 55.0
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 2.6e-12 78.2 77 54.5
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 4.2e-10 70.9 85 51.8


User provided reference genes

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