Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 1.4e-235 819.7 553 100.0
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 1.6e-183 646.7 557 80.3
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 2.9e-161 572.8 554 74.0
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 5.0e-145 518.8 557 69.5
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 1.6e-111 407.5 561 59.4
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 3.2e-91 340.1 583 45.1
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 1.1e-88 331.6 567 47.4
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 6.8e-86 322.4 463 54.2
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 1.0e-81 308.5 584 41.4
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 2.8e-79 300.4 587 44.6
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 4.1e-75 286.6 579 40.9
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 1.2e-74 285.0 577 41.4
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 2.1e-74 284.3 562 45.2
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 3.3e-72 276.9 355 56.6
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 5.6e-72 276.2 579 39.6
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 3.6e-71 273.5 557 40.2
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 8.9e-70 268.9 414 46.1
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 1.7e-68 264.6 510 40.6
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 4.9e-68 263.1 425 48.9
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 6.4e-68 262.7 562 44.8
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 8.4e-68 262.3 590 38.0
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.4e-67 261.5 562 44.7
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 3.0e-65 253.8 548 36.1
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.9e-64 251.1 560 42.9
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 9.6e-64 248.8 417 47.5
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 1.2e-63 248.4 602 40.5
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 9.9e-61 238.8 565 39.1
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 1.1e-59 235.3 545 38.5
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 2.4e-59 234.2 441 43.8
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 5.4e-59 233.0 560 39.8
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 5.4e-59 233.0 441 43.5
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 2.1e-58 231.1 561 39.2
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 5.1e-57 226.5 430 43.3
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 1.5e-56 224.9 491 37.7
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 7.3e-56 222.6 311 53.7
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 1.6e-55 221.5 567 37.9
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 3.6e-55 220.3 629 36.4
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 3.6e-55 220.3 575 51.1
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 1.1e-54 218.8 676 35.2
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 3.1e-54 217.2 550 37.8
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 3.1e-54 217.2 601 35.4
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 3.1e-54 217.2 564 37.9
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 3.1e-54 217.2 412 41.0
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 1.5e-53 214.9 646 40.9
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 2.0e-53 214.5 558 39.2
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 2.6e-53 214.2 572 37.2
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 5.8e-53 213.0 570 37.0
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 9.9e-53 212.2 372 46.2
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 1.3e-52 211.8 570 37.0
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 1.9e-51 208.0 564 38.3
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 3.2e-51 207.2 708 32.8
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 4.2e-51 206.8 284 51.4
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 7.1e-51 206.1 360 47.2
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 1.2e-50 205.3 360 49.7
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 1.6e-50 204.9 266 55.6
Manes.11G104500 Manihot esculenta HOM05D003229 ORTHO05D003835 4.6e-50 203.4 397 46.1
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 7.9e-50 202.6 522 37.4
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 2.3e-49 201.1 362 45.9
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 1.9e-48 198.0 284 51.8
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 3.3e-48 197.2 526 38.2
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 1.3e-47 195.3 359 46.8
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 1.6e-47 194.9 526 36.9
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 8.1e-47 192.6 576 33.7
FAN15G3758 Fragaria x ananassa HOM05D003229 ORTHO05D003835 2.6e-45 187.6 708 31.2
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 4.5e-45 186.8 406 39.9
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.3e-44 185.3 381 43.3
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 2.2e-44 184.5 584 38.4
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 2.2e-44 184.5 365 43.8
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 3.8e-44 183.7 299 44.8
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 3.8e-44 183.7 299 44.8
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 6.4e-44 183.0 406 43.6
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 6.4e-44 183.0 540 34.3
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 8.4e-44 182.6 277 43.7
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 8.4e-44 182.6 449 38.1
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 1.9e-43 181.4 601 39.1
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 2.4e-43 181.0 299 45.8
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 2.4e-43 181.0 299 45.8
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 5.5e-43 179.9 373 43.2
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 9.3e-43 179.1 558 31.4
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 9.3e-43 179.1 596 38.8
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 2.1e-42 177.9 599 34.2
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 3.5e-42 177.2 446 36.1
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 4.6e-42 176.8 277 43.7
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 7.9e-42 176.0 295 41.0
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 1.3e-41 175.3 558 31.2
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 2.3e-41 174.5 388 43.6
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 3.9e-41 173.7 418 37.6
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 3.9e-41 173.7 298 40.9
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 5.1e-41 173.3 394 43.1
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 6.7e-41 172.9 568 33.8
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 4.3e-40 170.2 288 49.3
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 9.6e-40 169.1 321 41.4
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 1.3e-39 168.7 305 44.3
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 2.8e-39 167.5 571 33.8
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 4.0e-38 163.7 313 41.5
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 2.0e-37 161.4 342 36.5
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 2.6e-37 161.0 218 45.4
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 3.4e-37 160.6 313 44.7
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 4.5e-37 160.2 415 35.9
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 1.3e-36 158.7 334 46.7
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 6.5e-36 156.4 331 40.8
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 6.5e-36 156.4 298 41.6
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 8.4e-36 156.0 344 39.8
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 1.4e-35 155.2 397 33.2
Potri.004G193500 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.2e-34 152.1 578 41.7
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 2.1e-34 151.4 679 27.2
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 2.7e-34 151.0 216 45.8
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 3.5e-34 150.6 275 41.1
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 1.0e-33 149.1 216 51.9
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 3.0e-33 147.5 299 38.5
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 3.0e-33 147.5 252 40.5
Psat5g107520 Pisum sativum HOM05D003229 ORTHO05D003835 1.9e-32 144.8 344 58.1
Lsat_1_v5_gn_3_111681 Lactuca sativa HOM05D003229 ORTHO05D003835 2.5e-32 144.4 372 43.3
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 2.4e-30 137.9 395 39.7
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 5.3e-30 136.7 212 42.9
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 1.5e-29 135.2 517 31.1
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 2.0e-29 134.8 149 53.7
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 2.6e-29 134.4 512 30.9
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 3.4e-29 134.0 192 44.3
HPP92_026334 Vanilla planifolia HOM05D003229 ORTHO05D003835 3.4e-29 134.0 418 39.2
QL02p079790 Quercus lobata HOM05D003229 ORTHO05D003835 4.5e-29 133.7 208 42.8
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 1.3e-28 132.1 244 35.7
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 1.1e-27 129.0 166 56.6
Zm00001eb200300 Zea mays HOM05D003229 ORTHO05D003835 1.1e-27 129.0 369 42.3
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 2.5e-27 127.9 440 33.2
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 3.6e-26 124.0 313 35.1
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 3.6e-26 124.0 236 33.1
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 7.9e-26 122.9 305 34.4
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 1.5e-24 118.6 267 36.7
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 3.3e-24 117.5 134 40.3
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 5.7e-24 116.7 176 41.5
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 9.7e-24 115.9 315 32.1
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 9.7e-24 115.9 96 57.3
Prupe.6G179900 Prunus persica HOM05D003229 ORTHO05D003835 1.3e-23 115.5 371 34.2
Sabra04G0131800 Salix brachista HOM05D003229 ORTHO05D003835 1.6e-23 115.2 240 37.5
Zm00001eb114310 Zea mays HOM05D003229 ORTHO05D003835 4.8e-23 113.6 290 44.8
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 6.3e-23 113.2 169 45.0
Nitab4.5_0002498g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 6.9e-22 109.8 521 30.9
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 9.0e-22 109.4 238 35.7
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 1.2e-21 109.0 224 35.3
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 3.4e-21 107.5 144 43.1
Nitab4.5_0013078g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 3.4e-21 107.5 580 27.4
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 5.9e-21 106.7 546 27.7
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 1.0e-20 105.9 249 29.3
Nitab4.5_0000875g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.0e-20 105.9 581 27.9
vmacro04054 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 3.8e-20 104.0 565 28.1
Gorai.009G396300 Gossypium raimondii HOM05D003229 ORTHO05D003835 1.4e-19 102.1 238 31.5
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 3.2e-19 100.9 262 26.0
Mapoly0019s0115 Marchantia polymorpha HOM05D003229 ORTHO05D003835 4.2e-19 100.5 319 35.7
AT3G43490 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 7.2e-19 99.8 193 34.7
Os11g0575200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 1.6e-18 98.6 152 45.4
Thecc.05G181700 Theobroma cacao HOM05D003229 ORTHO05D003835 5.1e-17 93.6 206 31.1
BraA09t41117Z Brassica rapa HOM05D003229 ORTHO05D003835 9.7e-16 89.4 200 32.5
Dinv25091 Davidia involucrata HOM05D003229 ORTHO05D003835 1.3e-15 89.0 133 40.6
A09p57240 Brassica napus HOM05D003229 ORTHO05D003835 2.8e-15 87.8 166 33.7
Os11g0573200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 1.4e-14 85.5 146 51.4
EL10Ac5g11782 Beta vulgaris HOM05D003229 ORTHO05D003835 3.1e-14 84.3 168 30.4
BcaC07g41025 Brassica carinata HOM05D003229 ORTHO05D003835 2.0e-13 81.6 163 31.9
Aqoxy1G00567 Aquilegia oxysepala HOM05D003229 ORTHO05D003835 2.6e-13 81.3 107 38.3
AagrBONN_evm.TU.Sc2ySwM_368.3251 Anthoceros agrestis HOM05D003229 ORTHO05D003835 5.9e-13 80.1 120 38.3
Thhalv10002168m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 5.9e-13 80.1 242 34.3
C03p32850 Brassica napus HOM05D003229 ORTHO05D003835 2.2e-12 78.2 162 29.6
BolC3t15620H Brassica oleracea HOM05D003229 ORTHO05D003835 2.2e-12 78.2 162 29.6
Psat1g058880 Pisum sativum HOM05D003229 ORTHO05D003835 2.9e-12 77.8 177 40.1
Sp4g01780 Schrenkiella parvula HOM05D003229 ORTHO05D003835 3.8e-12 77.4 152 36.8
BcaB01g02976 Brassica carinata HOM05D003229 ORTHO05D003835 6.5e-12 76.6 184 28.3
C08p40280 Brassica napus HOM05D003229 ORTHO05D003835 8.5e-12 76.3 251 27.1
BolC8t51596H Brassica oleracea HOM05D003229 ORTHO05D003835 8.5e-12 76.3 251 27.1
Sopen01g025320 Solanum pennellii HOM05D000006 ORTHO05D000001 3.2e-11 74.3 123 43.1
A03p27320 Brassica napus HOM05D003229 ORTHO05D003835 1.2e-10 72.4 162 28.4
BraA03t11943Z Brassica rapa HOM05D003229 ORTHO05D003835 1.2e-10 72.4 162 28.4
Pp3c2_2680 Physcomitrium patens HOM05D003229 ORTHO05D003835 3.6e-10 70.9 158 41.1
Gohir.A04G056400 Gossypium hirsutum HOM05D003229 ORTHO05D003835 6.1e-10 70.1 128 29.7
PGSC0003DMG401021491 Solanum tuberosum HOM05D024157 ORTHO05D025896 7.9e-10 69.7 97 39.2
Thhalv10002930m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 6.7e-09 66.6 375 24.8
Pp3c1_33300 Physcomitrium patens HOM05D003229 ORTHO05D003835 2.6e-08 64.7 237 35.9
Solyc01g056750.1 Solanum lycopersicum HOM05D003229 ORTHO05D003835 5.7e-08 63.5 62 45.2
AUR62036294 Chenopodium quinoa HOM05D003229 ORTHO05D003835 1.7e-07 62.0 163 26.4
CSS0028132 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 2.8e-07 61.2 246 28.5
Haze_22516 Corylus avellana HOM05D003229 ORTHO05D017800 3.7e-07 60.8 95 33.7
Psat3g067960 Pisum sativum HOM05D003229 ORTHO05D003835 4.8e-07 60.5 57 66.7
COL.COLO4_15223 Corchorus olitorius HOM05D003229 ORTHO05D003835 8.2e-07 59.7 142 33.8
DCAR_020672 Daucus carota HOM05D003229 ORTHO05D003835 1.1e-06 59.3 56 44.6
Thhalv10023543m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 1.1e-06 59.3 265 30.9
Hund15039 Selenicereus undatus HOM05D003229 ORTHO05D003835 1.4e-06 58.9 160 24.4
Ah.12g059520 Amaranthus hybridus HOM05D003229 ORTHO05D003835 7.0e-06 56.6 216 26.9
Lj2A839T58 Lonicera japonica HOM05D003229 ORTHO05D003835 7.0e-06 56.6 254 33.1


User provided reference genes

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