Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G047700 Glycine max HOM05D000012 ORTHO05D213958 8.2e-73 276.9 139 100.0
Glyma.17G153300 Glycine max HOM05D000012 ORTHO05D001060 5.1e-14 81.6 40 90.0
Glyma.05G070600 Glycine max HOM05D000012 ORTHO05D001060 3.3e-13 79.0 40 87.5
VMungo0251G2359 Vigna mungo HOM05D000012 ORTHO05D001060 3.3e-13 79.0 40 87.5
Phvul.003G229000 Phaseolus vulgaris HOM05D000012 ORTHO05D001060 7.3e-13 77.8 40 85.0
TPR.G19201 Trifolium pratense HOM05D000012 ORTHO05D001060 4.0e-11 72.0 40 77.5
Ca_22057_v3 Cicer arietinum L. HOM05D000012 ORTHO05D001060 5.3e-11 71.6 40 77.5
Lj4g0022429 Lotus japonicus HOM05D000012 ORTHO05D001060 9.0e-11 70.9 40 75.0
Psat4g078440 Pisum sativum HOM05D000012 ORTHO05D001060 2.0e-10 69.7 40 75.0
Medtr4g098800 Medicago truncatula HOM05D000012 ORTHO05D001060 4.4e-10 68.6 39 76.9
Atru.chr6.1760 Acer truncatum HOM05D000012 ORTHO05D001060 7.6e-10 67.8 40 72.5
Haze_08278 Corylus avellana HOM05D000012 ORTHO05D001060 2.2e-09 66.2 40 70.0
Haze_08283 Corylus avellana HOM05D000012 ORTHO05D001060 2.2e-09 66.2 40 70.0
DCAR_008291 Daucus carota HOM05D000012 ORTHO05D001060 8.4e-09 64.3 45 60.0
arahy.Tifrunner.gnm1.ann1.DGS72K Arachis hypogaea HOM05D000012 ORTHO05D001060 2.4e-08 62.8 42 59.5
arahy.Tifrunner.gnm1.ann1.YRJ0LE Arachis hypogaea HOM05D000012 ORTHO05D001060 2.4e-08 62.8 42 59.5
DCAR_005607 Daucus carota HOM05D000012 ORTHO05D001060 3.2e-08 62.4 45 60.0
Glyma.14G101100 Glycine max HOM05D000653 ORTHO05D002177 3.2e-08 62.4 34 91.2
Medtr5g014150 Medicago truncatula HOM05D000012 ORTHO05D001060 4.2e-08 62.0 41 63.4
CiPaw.12G061500 Carya illinoinensis HOM05D000012 ORTHO05D001060 5.4e-08 61.6 40 67.5
Glyma.01G200100 Glycine max HOM05D000012 ORTHO05D001060 7.1e-08 61.2 40 65.0
Glyma.11G042000 Glycine max HOM05D000012 ORTHO05D001060 7.1e-08 61.2 40 65.0
Actinidia03388 Actinidia chinensis HOM05D000012 ORTHO05D001060 1.2e-07 60.5 45 60.0
Ciclev10031017m.g Citrus clementina HOM05D000012 ORTHO05D001060 1.6e-07 60.1 40 67.5
Lalb_Chr09g0323891 Lupinus albus HOM05D000012 ORTHO05D001060 1.6e-07 60.1 40 65.0
MD06G1029400 Malus domestica HOM05D000012 ORTHO05D001060 2.1e-07 59.7 40 62.5
Glyma.17G224000 Glycine max HOM05D000653 ORTHO05D002177 2.7e-07 59.3 39 76.9
Manes.15G170000 Manihot esculenta HOM05D000012 ORTHO05D001060 2.7e-07 59.3 40 60.0
Manes.17G018600 Manihot esculenta HOM05D000012 ORTHO05D001060 2.7e-07 59.3 40 57.5
Prupe.5G042300 Prunus persica HOM05D000012 ORTHO05D001060 2.7e-07 59.3 40 65.0
Lj5g0010175 Lotus japonicus HOM05D000653 ORTHO05D002177 3.5e-07 58.9 35 82.9
MD16G1277800 Malus domestica HOM05D000012 ORTHO05D001060 3.5e-07 58.9 40 60.0
Potri.001G145200 Populus trichocarpa HOM05D000012 ORTHO05D001060 4.6e-07 58.5 40 60.0
Sabra01G0113400 Salix brachista HOM05D000012 ORTHO05D001060 6.0e-07 58.2 40 60.0
Phvul.002G005700 Phaseolus vulgaris HOM05D000012 ORTHO05D001060 7.9e-07 57.8 40 62.5
QL12p006702 Quercus lobata HOM05D000012 ORTHO05D001060 7.9e-07 57.8 40 62.5
VMungo1215G2884 Vigna mungo HOM05D000012 ORTHO05D001060 7.9e-07 57.8 40 62.5
FvH4_5g21490 Fragaria vesca HOM05D000012 ORTHO05D001060 1.0e-06 57.4 41 68.3
FAN13G2220 Fragaria x ananassa HOM05D000012 ORTHO05D001060 1.0e-06 57.4 41 68.3
FAN18G2047 Fragaria x ananassa HOM05D000012 ORTHO05D001060 1.0e-06 57.4 41 68.3
TWI60G0514 Tripterygium wilfordii HOM05D000012 ORTHO05D001060 1.0e-06 57.4 43 60.5
VMungo0647G0140 Vigna mungo HOM05D000653 ORTHO05D002177 1.3e-06 57.0 38 81.6
Potri.003G088800 Populus trichocarpa HOM05D000012 ORTHO05D001060 1.7e-06 56.6 40 57.5
TWI81G0054 Tripterygium wilfordii HOM05D000012 ORTHO05D001060 2.3e-06 56.2 42 59.5
Eucgr.D02167 Eucalyptus grandis HOM05D000012 ORTHO05D001060 3.0e-06 55.8 40 55.0
Gohir.D03G169900 Gossypium hirsutum HOM05D000012 ORTHO05D001060 3.0e-06 55.8 42 54.8
FAN08G0326 Fragaria x ananassa HOM05D000012 ORTHO05D001060 3.9e-06 55.5 41 65.9
PGR031G3994 Punica granatum HOM05D000012 ORTHO05D001060 5.1e-06 55.1 36 61.1
Sed0015903 Sechium edule HOM05D000012 ORTHO05D001060 5.1e-06 55.1 42 59.5
TWI15G0271 Tripterygium wilfordii HOM05D000012 ORTHO05D001060 5.1e-06 55.1 43 55.8
Actinidia09226 Actinidia chinensis HOM05D000012 ORTHO05D001060 6.6e-06 54.7 48 50.0
CSS0016218 Camellia sinensis var. sinensis HOM05D000012 ORTHO05D001060 6.6e-06 54.7 45 51.1
HanXRQChr06g0167261 Helianthus annuus HOM05D000012 ORTHO05D001060 6.6e-06 54.7 35 60.0
RcHm_v2.0_Chr7g0208891 Rosa chinensis HOM05D000012 ORTHO05D001060 6.6e-06 54.7 39 69.2
Ca_13061_v3 Cicer arietinum L. HOM05D000653 ORTHO05D002177 8.7e-06 54.3 33 81.8
Gorai.003G180200 Gossypium raimondii HOM05D000012 ORTHO05D001060 8.7e-06 54.3 41 53.7
Lj2g0000164 Lotus japonicus HOM05D000012 ORTHO05D001060 8.7e-06 54.3 33 69.7
MD07G1082700 Malus domestica HOM05D000012 ORTHO05D001060 8.7e-06 54.3 44 47.7
Psat2g173680 Pisum sativum HOM05D000012 ORTHO05D001060 8.7e-06 54.3 42 61.9
Thecc.03G232300 Theobroma cacao HOM05D000012 ORTHO05D001060 8.7e-06 54.3 40 55.0


User provided reference genes

Program Settings