Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 4.4e-74 281.2 140 100.0
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 1.1e-43 180.3 95 91.6
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 3.1e-43 178.7 95 91.6
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 4.4e-42 174.9 95 89.5
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 9.3e-40 167.2 95 86.3
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 2.1e-39 166.0 95 87.4
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 2.1e-39 166.0 93 88.2
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 4.6e-39 164.9 95 86.3
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 6.0e-39 164.5 95 86.3
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 3.0e-38 162.2 94 84.0
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 1.5e-37 159.8 95 83.2
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 2.5e-37 159.1 94 81.9
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 2.5e-37 159.1 94 81.9
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 5.6e-37 157.9 100 75.0
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.6e-36 156.4 93 81.7
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 4.8e-36 154.8 94 83.0
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 6.2e-36 154.5 95 80.0
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 8.1e-36 154.1 93 81.7
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 1.4e-35 153.3 93 80.6
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 1.8e-35 152.9 94 78.7
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 1.8e-35 152.9 93 79.6
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 1.8e-35 152.9 94 78.7
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.4e-35 152.5 93 79.6
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 2.4e-35 152.5 94 79.8
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 3.1e-35 152.1 93 77.4
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 4.0e-35 151.8 93 81.7
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 4.0e-35 151.8 94 78.7
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 4.0e-35 151.8 94 78.7
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 6.9e-35 151.0 103 71.8
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 1.2e-34 150.2 93 76.3
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 1.5e-34 149.8 93 75.3
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 1.5e-34 149.8 93 76.3
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 2.0e-34 149.4 93 76.3
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 2.0e-34 149.4 93 79.6
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 2.6e-34 149.1 94 78.7
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 3.4e-34 148.7 94 76.6
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 4.5e-34 148.3 93 77.4
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 4.5e-34 148.3 93 77.4
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 4.5e-34 148.3 93 77.4
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 4.5e-34 148.3 93 77.4
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 7.6e-34 147.5 94 76.6
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 9.9e-34 147.1 94 76.6
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 9.9e-34 147.1 92 77.2
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 9.9e-34 147.1 92 77.2
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 9.9e-34 147.1 93 75.3
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 1.3e-33 146.7 93 77.4
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 1.3e-33 146.7 92 77.2
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 1.7e-33 146.4 93 76.3
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 1.7e-33 146.4 93 76.3
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 1.7e-33 146.4 93 76.3
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.2e-33 146.0 100 75.0
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.9e-33 145.6 96 77.1
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.9e-33 145.6 96 77.1
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 2.9e-33 145.6 95 76.8
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 2.9e-33 145.6 94 75.5
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 3.8e-33 145.2 94 74.5
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 3.8e-33 145.2 94 71.3
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 3.8e-33 145.2 95 74.7
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 3.8e-33 145.2 94 74.5
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 4.9e-33 144.8 93 75.3
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 4.9e-33 144.8 96 74.0
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 4.9e-33 144.8 93 77.4
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 8.4e-33 144.1 95 75.8
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 8.4e-33 144.1 93 73.1
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 8.4e-33 144.1 93 73.1
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 8.4e-33 144.1 93 73.1
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 8.4e-33 144.1 93 73.1
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 8.4e-33 144.1 96 74.0
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 8.4e-33 144.1 93 77.4
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 1.1e-32 143.7 95 72.6
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.1e-32 143.7 92 77.2
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 1.4e-32 143.3 92 75.0
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 1.4e-32 143.3 94 73.4
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.4e-32 143.3 94 76.6
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 1.9e-32 142.9 94 74.5
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.9e-32 142.9 83 79.5
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 2.4e-32 142.5 93 72.0
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 2.4e-32 142.5 94 76.6
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 3.2e-32 142.1 95 70.5
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 3.2e-32 142.1 93 72.0
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 3.2e-32 142.1 94 73.4
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 5.4e-32 141.4 93 73.1
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 7.1e-32 141.0 93 72.0
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 7.1e-32 141.0 93 75.3
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 9.3e-32 140.6 95 71.6
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.2e-31 140.2 95 73.7
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.6e-31 139.8 95 73.7
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 2.1e-31 139.4 95 72.6
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 2.7e-31 139.0 94 73.4
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 4.6e-31 138.3 94 72.3
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 4.6e-31 138.3 95 72.6
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 4.6e-31 138.3 95 72.6
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 6.0e-31 137.9 95 72.6
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 6.0e-31 137.9 98 70.4
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 1.3e-30 136.7 94 71.3
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 1.3e-30 136.7 94 72.3
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 1.8e-30 136.3 94 71.3
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 2.3e-30 136.0 94 70.2
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 2.3e-30 136.0 94 72.3
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 3.0e-30 135.6 82 78.0
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 3.0e-30 135.6 94 71.3
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 5.1e-30 134.8 92 72.8
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 8.7e-30 134.0 94 69.1
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 1.1e-29 133.7 92 73.9
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 2.5e-29 132.5 94 68.1
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 3.3e-29 132.1 91 71.4
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 7.4e-29 131.0 94 67.0
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 8.1e-28 127.5 103 64.1
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 2.4e-27 125.9 95 65.3
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 4.0e-27 125.2 103 64.1
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 3.8e-25 118.6 85 65.9
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 1.1e-24 117.1 94 60.6
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 1.1e-24 117.1 94 64.9
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 8.7e-22 107.5 63 79.4
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 2.5e-21 105.9 93 59.1
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 1.8e-19 99.8 71 74.6
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 8.4e-17 90.9 49 87.8
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 8.4e-17 90.9 61 70.5
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.9e-16 89.7 95 55.8
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 4.2e-16 88.6 63 65.1
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 2.5e-13 79.3 63 63.5
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 5.9e-10 68.2 74 54.1
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 4.6e-07 58.5 41 73.2
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 6.7e-06 54.7 31 77.4


User provided reference genes

Program Settings