Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G042600 Glycine max HOM05D006863 ORTHO05D009101 2.2e-142 508.8 242 100.0
Glyma.08G260300 Glycine max HOM05D006863 ORTHO05D009101 2.0e-90 336.3 177 92.1
Phvul.002G082500 Phaseolus vulgaris HOM05D006863 ORTHO05D009101 8.7e-86 320.9 164 92.1
VMungo1215G1485 Vigna mungo HOM05D006863 ORTHO05D009101 1.3e-81 307.0 164 87.2
TPR.G38252 Trifolium pratense HOM05D006863 ORTHO05D009101 1.7e-81 306.6 164 85.4
Medtr5g054910 Medicago truncatula HOM05D006863 ORTHO05D009101 2.1e-79 299.7 164 83.5
Lalb_Chr17g0342021 Lupinus albus HOM05D006863 ORTHO05D009101 4.6e-79 298.5 164 82.9
Lj2g0005111 Lotus japonicus HOM05D006863 ORTHO05D009101 7.9e-79 297.7 165 85.5
Dinv04484 Davidia involucrata HOM05D006863 ORTHO05D009101 3.9e-78 295.4 176 76.7
Psat4g144720 Pisum sativum HOM05D006863 ORTHO05D009101 6.6e-78 294.7 177 78.0
HanXRQChr17g0552211 Helianthus annuus HOM05D006863 ORTHO05D009101 1.6e-76 290.0 164 78.0
Atru.chr11.1297 Acer truncatum HOM05D006863 ORTHO05D009101 4.0e-75 285.4 164 77.4
QL01p043996 Quercus lobata HOM05D006863 ORTHO05D009101 4.0e-75 285.4 164 78.7
Manes.14G100000 Manihot esculenta HOM05D006863 ORTHO05D009101 6.9e-75 284.6 164 79.3
arahy.Tifrunner.gnm1.ann1.S0U20I Arachis hypogaea HOM05D006863 ORTHO05D009101 2.6e-74 282.7 164 78.7
TAR371G0467 Trochodendron aralioides HOM05D006863 ORTHO05D009101 5.8e-74 281.6 164 78.0
arahy.Tifrunner.gnm1.ann1.2EV214 Arachis hypogaea HOM05D006863 ORTHO05D009101 9.9e-74 280.8 164 78.0
Lj3C1017T9 Lonicera japonica HOM05D006863 ORTHO05D009101 9.9e-74 280.8 164 76.2
CSS0023691 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 1.3e-73 280.4 164 76.2
ECA246G5009 Erigeron canadensis HOM05D006863 ORTHO05D009101 1.7e-73 280.0 164 75.0
Rhsim09G0110000 Rhododendron simsii HOM05D006863 ORTHO05D009101 1.7e-73 280.0 164 77.4
GSVIVG01011920001 Vitis vinifera HOM05D006863 ORTHO05D009101 1.7e-73 280.0 164 78.7
vmacro10546 Vaccinium macrocarpon HOM05D006863 ORTHO05D009101 4.9e-73 278.5 164 76.2
Prupe.1G308400 Prunus persica HOM05D006863 ORTHO05D009101 6.4e-73 278.1 164 75.6
Eucgr.G02336 Eucalyptus grandis HOM05D006863 ORTHO05D009101 8.4e-73 277.7 164 75.6
Nitab4.5_0000280g0240 Nicotiana tabacum HOM05D006863 ORTHO05D009101 1.4e-72 276.9 164 76.2
Gohir.1Z049378 Gossypium hirsutum HOM05D006863 ORTHO05D009101 3.2e-72 275.8 164 76.8
Gohir.A13G053600 Gossypium hirsutum HOM05D006863 ORTHO05D009101 3.2e-72 275.8 164 76.8
MD13G1044100 Malus domestica HOM05D006863 ORTHO05D009101 3.2e-72 275.8 164 74.4
RcHm_v2.0_Chr4g0435511 Rosa chinensis HOM05D006863 ORTHO05D009101 4.2e-72 275.4 164 74.4
Sabra10G0096600 Salix brachista HOM05D006863 ORTHO05D009101 4.2e-72 275.4 164 76.8
TWI75G0199 Tripterygium wilfordii HOM05D006863 ORTHO05D009101 5.4e-72 275.0 164 74.4
Gorai.013G081400 Gossypium raimondii HOM05D006863 ORTHO05D009101 1.2e-71 273.9 164 76.2
CiPaw.15G005400 Carya illinoinensis HOM05D006863 ORTHO05D009101 2.7e-71 272.7 155 79.4
Ciclev10031676m.g Citrus clementina HOM05D006863 ORTHO05D009101 4.6e-71 271.9 164 77.4
DCAR_026725 Daucus carota HOM05D006863 ORTHO05D009101 6.0e-71 271.6 164 71.3
PGSC0003DMG401015876 Solanum tuberosum HOM05D006863 ORTHO05D009101 1.0e-70 270.8 164 72.6
Gohir.D13G071100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.3e-70 270.4 164 75.0
Thecc.02G357800 Theobroma cacao HOM05D006863 ORTHO05D009101 1.3e-70 270.4 164 73.8
EL10Ac6g14444 Beta vulgaris HOM05D006863 ORTHO05D009101 1.8e-70 270.0 164 73.2
Cpa.g.sc1.191 Carica papaya HOM05D006863 ORTHO05D009101 2.3e-70 269.6 164 73.2
Sopen04g002190 Solanum pennellii HOM05D006863 ORTHO05D009101 6.7e-70 268.1 164 72.0
Ah.03g137770 Amaranthus hybridus HOM05D006863 ORTHO05D005487 8.7e-70 267.7 164 72.0
FvH4_4g27661 Fragaria vesca HOM05D006863 ORTHO05D009101 8.7e-70 267.7 164 72.6
CANSAT56G0117 Cannabis sativa HOM05D006863 ORTHO05D009101 1.1e-69 267.3 166 74.7
FAN12G1275 Fragaria x ananassa HOM05D006863 ORTHO05D009101 1.1e-69 267.3 164 72.0
Potri.010G127200 Populus trichocarpa HOM05D006863 ORTHO05D009101 1.1e-69 267.3 164 74.4
AT3G25805 Arabidopsis thaliana HOM05D006863 ORTHO05D009101 1.9e-69 266.5 164 72.0
AL5G14420 Arabidopsis lyrata HOM05D006863 ORTHO05D009101 2.5e-69 266.2 164 72.0
Peaxi162Scf00086g00919 Petunia axillaris HOM05D006863 ORTHO05D009101 2.5e-69 266.2 177 68.4
Solyc04g007110.4 Solanum lycopersicum HOM05D006863 ORTHO05D009101 3.3e-69 265.8 164 71.3
FAN22G1855 Fragaria x ananassa HOM05D006863 ORTHO05D009101 5.6e-69 265.0 164 71.3
Sed0022103 Sechium edule HOM05D006863 ORTHO05D009101 5.6e-69 265.0 164 71.3
Aqoxy3G00331 Aquilegia oxysepala HOM05D006863 ORTHO05D009101 9.6e-69 264.2 164 73.2
arahy.Tifrunner.gnm1.ann1.PE9U7E Arachis hypogaea HOM05D006863 ORTHO05D009101 1.3e-68 263.8 198 64.6
Duzib251G0889 Durio zibethinus HOM05D006863 ORTHO05D009101 1.6e-68 263.5 164 73.8
CsaV3_6G003370 Cucumis sativus L. HOM05D006863 ORTHO05D009101 2.1e-68 263.1 164 69.5
Thhalv10004539m.g Eutrema salsugineum HOM05D006863 ORTHO05D009101 2.8e-68 262.7 164 71.3
Nitab4.5_0009260g0040 Nicotiana tabacum HOM05D006863 ORTHO05D009101 3.7e-68 262.3 164 73.2
Sp2g15050 Schrenkiella parvula HOM05D006863 ORTHO05D009101 8.1e-68 261.2 164 71.3
CARHR146720 Cardamine hirsuta HOM05D006863 ORTHO05D009101 1.1e-67 260.8 164 69.5
Aa31LG2G6540 Aethionema arabicum HOM05D006863 ORTHO05D009101 1.4e-67 260.4 164 70.7
BcaC04g21415 Brassica carinata HOM05D006863 ORTHO05D005487 1.8e-67 260.0 164 69.5
C09p32050 Brassica napus HOM05D006863 ORTHO05D009101 1.8e-67 260.0 164 69.5
BolC9t56057H Brassica oleracea HOM05D006863 ORTHO05D005487 1.8e-67 260.0 164 69.5
AUR62035252 Chenopodium quinoa HOM05D006863 ORTHO05D009101 1.8e-67 260.0 164 70.7
ClCG08G005160 Citrullus lanatus HOM05D006863 ORTHO05D009101 2.4e-67 259.6 164 69.5
Lsat_1_v5_gn_3_59660 Lactuca sativa HOM05D006863 ORTHO05D009101 4.0e-67 258.8 164 70.7
Nn4g23802 Nelumbo nucifera HOM05D006863 ORTHO05D009101 4.0e-67 258.8 155 75.5
PGR119G0754 Punica granatum HOM05D006863 ORTHO05D009101 4.0e-67 258.8 165 73.3
Carub.0005s0363 Capsella rubella HOM05D006863 ORTHO05D009101 5.3e-67 258.5 164 69.5
BraA09t38093Z Brassica rapa HOM05D006863 ORTHO05D005487 9.0e-67 257.7 164 69.5
Migut.L01080 Erythranthe guttata HOM05D006863 ORTHO05D009101 2.0e-66 256.5 165 67.3
A09p25060 Brassica napus HOM05D006863 ORTHO05D005487 7.6e-66 254.6 164 68.9
AUR62002895 Chenopodium quinoa HOM05D006863 ORTHO05D009101 7.6e-66 254.6 164 69.5
MBI12_g32420_MAGBIO Magnolia biondii HOM05D006863 ORTHO05D009101 7.6e-66 254.6 164 70.1
SalBow8G2780 Salvia bowleyana HOM05D006863 ORTHO05D009101 7.6e-66 254.6 164 66.5
Cc11_g10350 Coffea canephora HOM05D006863 ORTHO05D009101 1.0e-65 254.2 181 64.6
THA.LOC104825705 Tarenaya hassleriana HOM05D006863 ORTHO05D009101 1.3e-65 253.8 165 68.5
SGA_v2.0_scaffold32G13125 Striga asiatica HOM05D006863 ORTHO05D009101 1.7e-65 253.4 164 67.7
BcaB07g30631 Brassica carinata HOM05D001825 ORTHO05D009101 6.5e-65 251.5 159 71.7
Sc04g0006570 Simmondsia chinensis HOM05D006863 ORTHO05D009101 3.2e-64 249.2 177 67.2
Actinidia14870 Actinidia chinensis HOM05D006863 ORTHO05D009101 4.2e-64 248.8 149 74.5
PSO447G0382 Papaver somniferum HOM05D006863 ORTHO05D009101 5.5e-64 248.4 164 66.5
PSO210G1549 Papaver somniferum HOM05D006863 ORTHO05D009101 2.1e-63 246.5 164 66.5
AUR62002896 Chenopodium quinoa HOM05D006863 ORTHO05D009101 2.7e-63 246.1 164 67.7
unitig_22.g6873 Utricularia gibba HOM05D001580 ORTHO05D009101 1.0e-62 244.2 164 65.2
MSTRG.824 Avicennia marina HOM05D006863 ORTHO05D009101 1.9e-61 240.0 164 64.6
Os04g0462300 Oryza sativa ssp. japonica HOM05D006863 ORTHO05D009101 7.4e-61 238.0 177 63.3
MELO3C011551.2 Cucumis melo HOM05D006863 ORTHO05D009101 1.6e-60 236.9 150 69.3
Zm00001eb080610 Zea mays HOM05D006863 ORTHO05D009101 2.4e-59 233.0 163 65.0
Peaxi162Scf00086g00918 Petunia axillaris HOM05D006863 ORTHO05D009101 8.4e-57 224.6 164 63.4
HPP92_023480 Vanilla planifolia HOM05D006863 ORTHO05D009101 8.4e-57 224.6 166 63.9
Haze_17458 Corylus avellana HOM05D006863 ORTHO05D009101 2.5e-56 223.0 164 65.2
SEGI_08911 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 1.3e-54 217.2 165 60.6
SEGI_20209 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 1.3e-54 217.2 165 60.6
Ca_27358_v3 Cicer arietinum L. HOM05D006863 ORTHO05D009101 6.3e-52 208.4 164 65.2
ATR0141G001 Amborella trichopoda HOM05D006863 ORTHO05D009101 1.4e-51 207.2 178 57.3
Mapoly0073s0050 Marchantia polymorpha HOM05D006863 ORTHO05D009101 1.4e-51 207.2 172 58.1
CSS0005134 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 2.5e-48 196.4 123 70.7
CSS0013896 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 2.5e-48 196.4 123 70.7
COL.COLO4_07899 Corchorus olitorius HOM05D006863 ORTHO05D009101 1.6e-47 193.7 140 65.0
Pp3c1_42010 Physcomitrium patens HOM05D006863 ORTHO05D009101 1.5e-42 177.2 164 50.0
Gorai.012G052200 Gossypium raimondii HOM05D006863 ORTHO05D009101 1.4e-40 170.6 113 67.3
SMO111G0216 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 5.5e-40 168.7 195 45.1
Gohir.D04G047100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 3.6e-39 166.0 113 66.4
Gohir.D11G195601 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.0e-33 147.9 113 61.9
AagrBONN_evm.TU.Sc2ySwM_117.2959 Anthoceros agrestis HOM05D006863 ORTHO05D009101 6.5e-33 145.2 144 49.3
MD16G1044900 Malus domestica HOM05D006863 ORTHO05D009101 3.0e-30 136.3 92 66.3
SMO358G0636 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 4.7e-23 112.5 125 45.6
Hund25085 Selenicereus undatus HOM05D006863 ORTHO05D009101 1.4e-14 84.3 45 80.0
Cre02.g088500 Chlamydomonas reinhardtii HOM05D002745 ORTHO05D002945 3.7e-12 76.3 166 30.7
PRCOL_00006784 Prasinoderma coloniale HOM05D006863 ORTHO05D002945 1.2e-10 71.2 147 31.3
MCO04G047 Micromonas commoda HOM05D006863 ORTHO05D002945 1.5e-08 64.3 153 29.4


User provided reference genes

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