Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G040200 Glycine max HOM05D003599 ORTHO05D004221 9.6e-110 400.2 206 100.0
Glyma.15G271800 Glycine max HOM05D003599 ORTHO05D004221 9.9e-91 337.0 185 91.9
Phvul.005G037000 Phaseolus vulgaris HOM05D003599 ORTHO05D004221 2.7e-88 328.9 185 89.2
Glyma.08G152400 Glycine max HOM05D003599 ORTHO05D004221 7.9e-88 327.4 185 89.7
Glyma.11G137151 Glycine max HOM05D003599 ORTHO05D004221 2.8e-85 318.9 169 97.6
VMungo1080G1621 Vigna mungo HOM05D003599 ORTHO05D004221 1.8e-84 316.2 185 85.4
Ca_26231_v3 Cicer arietinum L. HOM05D003599 ORTHO05D004221 2.1e-80 302.8 186 83.9
Lj3g0018349 Lotus japonicus HOM05D003599 ORTHO05D004221 8.7e-79 297.4 186 81.7
TPR.G26308 Trifolium pratense HOM05D003599 ORTHO05D004221 1.5e-78 296.6 186 82.8
Lalb_Chr25g0283241 Lupinus albus HOM05D003599 ORTHO05D004221 1.9e-78 296.2 187 80.7
TPR.G20345 Trifolium pratense HOM05D003599 ORTHO05D004221 2.8e-77 292.4 183 82.5
Psat5g207160 Pisum sativum HOM05D003599 ORTHO05D004221 4.8e-77 291.6 186 81.2
Lalb_Chr20g0108091 Lupinus albus HOM05D003599 ORTHO05D004221 1.4e-76 290.0 182 81.3
arahy.Tifrunner.gnm1.ann1.V362W9 Arachis hypogaea HOM05D003599 ORTHO05D004221 6.1e-72 274.6 187 78.6
arahy.Tifrunner.gnm1.ann1.X69RYV Arachis hypogaea HOM05D003599 ORTHO05D004221 5.1e-71 271.6 187 78.1
Medtr3g027610 Medicago truncatula HOM05D003599 ORTHO05D004221 5.7e-70 268.1 185 78.4
Lj3g0008997 Lotus japonicus HOM05D003599 ORTHO05D004221 1.6e-69 266.5 191 73.3
Glyma.06G207751 Glycine max HOM05D003599 ORTHO05D004221 3.7e-69 265.4 140 94.3
Haze_03250 Corylus avellana HOM05D003599 ORTHO05D004221 2.0e-67 259.6 188 74.5
Prupe.2G007800 Prunus persica HOM05D003599 ORTHO05D004221 1.7e-66 256.5 188 72.9
arahy.Tifrunner.gnm1.ann1.SKP1EQ Arachis hypogaea HOM05D003599 ORTHO05D004221 1.1e-65 253.8 186 71.5
QL04p004288 Quercus lobata HOM05D003599 ORTHO05D004221 1.9e-65 253.1 187 72.2
arahy.Tifrunner.gnm1.ann1.7I49QA Arachis hypogaea HOM05D003599 ORTHO05D004221 4.2e-65 251.9 186 71.0
MD02G1316400 Malus domestica HOM05D003599 ORTHO05D004221 4.2e-65 251.9 187 72.7
QL04p003920 Quercus lobata HOM05D003599 ORTHO05D004221 4.2e-65 251.9 187 72.2
CSS0018905 Camellia sinensis var. sinensis HOM05D003599 ORTHO05D004221 9.4e-65 250.8 188 71.8
vmacro13648 Vaccinium macrocarpon HOM05D003599 ORTHO05D004221 1.6e-64 250.0 188 70.2
MD07G1005500 Malus domestica HOM05D003599 ORTHO05D004221 6.1e-64 248.1 188 72.3
RcHm_v2.0_Chr4g0410621 Rosa chinensis HOM05D003599 ORTHO05D004221 1.0e-63 247.3 187 70.1
CiPaw.13G001900 Carya illinoinensis HOM05D003599 ORTHO05D004221 1.4e-63 246.9 188 70.7
Potri.009G065300 Populus trichocarpa HOM05D003599 ORTHO05D004221 2.3e-63 246.1 186 68.8
Manes.07G003200 Manihot esculenta HOM05D003599 ORTHO05D004221 3.9e-63 245.4 187 70.6
Thecc.01G414600 Theobroma cacao HOM05D003599 ORTHO05D004221 6.7e-63 244.6 189 69.8
Cc02_g27450 Coffea canephora HOM05D003599 ORTHO05D004221 1.5e-62 243.4 191 69.6
Rhsim07G0053800 Rhododendron simsii HOM05D003599 ORTHO05D004221 4.4e-62 241.9 190 68.9
GSVIVG01032046001 Vitis vinifera HOM05D003599 ORTHO05D004221 4.4e-62 241.9 188 70.7
Dinv43470 Davidia involucrata HOM05D003599 ORTHO05D004221 5.7e-62 241.5 188 67.0
ClCG10G012550 Citrullus lanatus HOM05D003599 ORTHO05D004221 7.4e-62 241.1 188 68.6
Dinv09382 Davidia involucrata HOM05D003599 ORTHO05D004221 7.4e-62 241.1 188 68.1
Glyma.03G039901 Glycine max HOM05D003599 ORTHO05D004221 9.7e-62 240.7 123 96.7
Sabra09G0048500 Salix brachista HOM05D003599 ORTHO05D004221 2.2e-61 239.6 186 68.3
MELO3C023955.2 Cucumis melo HOM05D003599 ORTHO05D004221 3.7e-61 238.8 188 67.6
CsaV3_3G032340 Cucumis sativus L. HOM05D003599 ORTHO05D004221 4.8e-61 238.4 188 67.6
Sed0001465 Sechium edule HOM05D003599 ORTHO05D004221 8.2e-61 237.7 186 68.3
FAN22G1903 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.1e-60 237.3 187 70.1
TAR369G0496 Trochodendron aralioides HOM05D003599 ORTHO05D004221 1.1e-60 237.3 189 68.8
FvH4_4g12380 Fragaria vesca HOM05D003599 ORTHO05D004221 4.1e-60 235.3 187 69.0
FAN12G0010 Fragaria x ananassa HOM05D003599 ORTHO05D004221 4.1e-60 235.3 187 69.0
FAN12G0382 Fragaria x ananassa HOM05D003599 ORTHO05D004221 4.1e-60 235.3 187 69.0
Eucgr.J01252 Eucalyptus grandis HOM05D003599 ORTHO05D004221 1.2e-59 233.8 187 65.8
FAN07G2146 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.5e-59 233.4 187 68.4
FAN17G0189 Fragaria x ananassa HOM05D003599 ORTHO05D004221 2.6e-59 232.6 187 68.4
COL.COLO4_23904 Corchorus olitorius HOM05D003599 ORTHO05D004221 3.4e-59 232.3 189 67.2
Oeu034893.1 Olea europaea HOM05D003599 ORTHO05D004221 3.4e-59 232.3 188 67.6
CANSAT56G1134 Cannabis sativa HOM05D003599 ORTHO05D004221 4.5e-59 231.9 186 68.8
Lj7C568T3 Lonicera japonica HOM05D003599 ORTHO05D004221 4.5e-59 231.9 189 67.2
MSTRG.17057 Avicennia marina HOM05D003599 ORTHO05D004221 5.9e-59 231.5 188 66.5
Duzib268G0099 Durio zibethinus HOM05D003599 ORTHO05D004221 2.9e-58 229.2 190 66.8
Nitab4.5_0001542g0140 Nicotiana tabacum HOM05D003599 ORTHO05D004221 2.9e-58 229.2 187 67.4
PGR044G0248 Punica granatum HOM05D003599 ORTHO05D004221 5.0e-58 228.4 189 65.6
Sed0009971 Sechium edule HOM05D003599 ORTHO05D004221 5.0e-58 228.4 189 67.2
Solyc01g086750.4 Solanum lycopersicum HOM05D003599 ORTHO05D004221 5.0e-58 228.4 188 67.6
TWI53G1897 Tripterygium wilfordii HOM05D003599 ORTHO05D004221 5.0e-58 228.4 187 66.3
Potri.001G271200 Populus trichocarpa HOM05D003599 ORTHO05D004221 6.5e-58 228.0 186 68.3
Sopen01g033750 Solanum pennellii HOM05D003599 ORTHO05D004221 6.5e-58 228.0 188 67.0
Migut.B01342 Erythranthe guttata HOM05D003599 ORTHO05D004221 8.5e-58 227.6 187 66.8
Psat1g032800 Pisum sativum HOM05D003599 ORTHO05D004221 1.9e-57 226.5 181 68.5
Sc11g0009360 Simmondsia chinensis HOM05D003599 ORTHO05D004221 1.9e-57 226.5 193 64.8
Ciclev10030514m.g Citrus clementina HOM05D003599 ORTHO05D004221 2.5e-57 226.1 189 64.0
ECA248G3304 Erigeron canadensis HOM05D003599 ORTHO05D004221 2.5e-57 226.1 193 65.3
HanXRQChr01g0017271 Helianthus annuus HOM05D003599 ORTHO05D004221 2.5e-57 226.1 185 65.4
SGA_v2.0_scaffold260G45866 Striga asiatica HOM05D003599 ORTHO05D004221 3.2e-57 225.7 189 65.1
Migut.N01485 Erythranthe guttata HOM05D003599 ORTHO05D004221 4.2e-57 225.3 190 65.3
Atru.chr11.2631 Acer truncatum HOM05D003599 ORTHO05D004221 9.4e-57 224.2 186 65.1
Nitab4.5_0004883g0020 Nicotiana tabacum HOM05D003599 ORTHO05D004221 9.4e-57 224.2 187 66.3
DCAR_029635 Daucus carota HOM05D003599 ORTHO05D004221 1.2e-56 223.8 186 65.6
Gohir.D08G167000 Gossypium hirsutum HOM05D003599 ORTHO05D004221 1.2e-56 223.8 187 66.8
Lsat_1_v5_gn_1_110320 Lactuca sativa HOM05D003599 ORTHO05D004221 1.2e-56 223.8 185 66.5
TWI73G0659 Tripterygium wilfordii HOM05D003599 ORTHO05D004221 1.6e-56 223.4 187 65.2
Ah.10g024830 Amaranthus hybridus HOM05D003599 ORTHO05D004221 2.1e-56 223.0 190 65.3
Aqoxy1G00213 Aquilegia oxysepala HOM05D003599 ORTHO05D004221 2.1e-56 223.0 187 66.3
AUR62009368 Chenopodium quinoa HOM05D003599 ORTHO05D004221 2.1e-56 223.0 195 62.6
Gorai.004G174400 Gossypium raimondii HOM05D003599 ORTHO05D004221 2.1e-56 223.0 187 66.8
CAN.G1393.20 Capsicum annuum HOM05D003599 ORTHO05D004221 6.1e-56 221.5 203 62.6
Thhalv10010065m.g Eutrema salsugineum HOM05D003599 ORTHO05D004221 6.1e-56 221.5 185 64.3
SalBow4G2031 Salvia bowleyana HOM05D003599 ORTHO05D004221 6.1e-56 221.5 191 64.9
AUR62023049 Chenopodium quinoa HOM05D003599 ORTHO05D004221 1.4e-55 220.3 195 63.1
MBI01_g25789_MAGBIO Magnolia biondii HOM05D003599 ORTHO05D004221 1.4e-55 220.3 196 62.8
SGA_v2.0_scaffold5G03126 Striga asiatica HOM05D003599 ORTHO05D004221 1.8e-55 219.9 195 62.1
Sp5g10140 Schrenkiella parvula HOM05D003599 ORTHO05D004221 2.3e-55 219.5 185 64.3
PSO339G0158 Papaver somniferum HOM05D003599 ORTHO05D004221 3.0e-55 219.2 185 64.9
A09p45200 Brassica napus HOM05D003599 ORTHO05D004221 3.9e-55 218.8 185 64.3
BraA09t39983Z Brassica rapa HOM05D003599 ORTHO05D004221 3.9e-55 218.8 185 64.3
Cpa.g.sc945.1 Carica papaya HOM05D003599 ORTHO05D004221 3.9e-55 218.8 186 62.9
THA.LOC104801983 Tarenaya hassleriana HOM05D003599 ORTHO05D004221 3.9e-55 218.8 185 65.4
C08p27410 Brassica napus HOM05D003599 ORTHO05D004221 5.2e-55 218.4 186 65.6
Nn7g36074 Nelumbo nucifera HOM05D003599 ORTHO05D004221 6.7e-55 218.0 192 60.9
BcaNung06096 Brassica carinata HOM05D003599 ORTHO05D004221 1.1e-54 217.2 185 63.8
Aa31LG10G7230 Aethionema arabicum HOM05D003599 ORTHO05D004221 1.5e-54 216.9 186 65.6
PSO384G0358 Papaver somniferum HOM05D003599 ORTHO05D004221 2.0e-54 216.5 185 63.8
CARHR161880 Cardamine hirsuta HOM05D003599 ORTHO05D004221 4.4e-54 215.3 185 63.8
Sabra16G0166600 Salix brachista HOM05D003599 ORTHO05D004221 5.7e-54 214.9 212 59.0
Os02g0717400 Oryza sativa ssp. japonica HOM05D003599 ORTHO05D004221 1.3e-53 213.8 185 60.5
AL5G32710 Arabidopsis lyrata HOM05D003599 ORTHO05D004221 1.7e-53 213.4 185 63.8
AT3G52140 Arabidopsis thaliana HOM05D003599 ORTHO05D004221 1.7e-53 213.4 185 64.9
A04p07220 Brassica napus HOM05D003599 ORTHO05D004221 1.7e-53 213.4 185 64.3
Carub.0005s1848 Capsella rubella HOM05D003599 ORTHO05D004221 1.7e-53 213.4 185 64.3
Medtr0321s0030 Medicago truncatula HOM05D003599 ORTHO05D004221 1.7e-53 213.4 162 72.8
BcaB02g08585 Brassica carinata HOM05D003599 ORTHO05D004221 2.8e-53 212.6 185 62.7
BcaC02g09276 Brassica carinata HOM05D003599 ORTHO05D004221 4.8e-53 211.8 186 64.5
C04p40780 Brassica napus HOM05D003599 ORTHO05D004221 4.8e-53 211.8 186 64.5
BolC8t50358H Brassica oleracea HOM05D003599 ORTHO05D004221 3.1e-52 209.1 199 61.3
unitig_0.g1376 Utricularia gibba HOM05D003599 ORTHO05D004221 4.1e-52 208.8 195 60.0
Peaxi162Scf00058g00215 Petunia axillaris HOM05D003599 ORTHO05D004221 7.0e-52 208.0 209 59.3
EL10Ac2g04309 Beta vulgaris HOM05D003599 ORTHO05D004221 9.1e-52 207.6 203 58.1
unitig_61.g26447 Utricularia gibba HOM05D003599 ORTHO05D004221 1.2e-51 207.2 189 62.4
Zm00001eb189030 Zea mays HOM05D003599 ORTHO05D004221 1.6e-51 206.8 185 60.0
Zm00001eb252790 Zea mays HOM05D003599 ORTHO05D004221 1.6e-51 206.8 185 61.6
Gohir.A08G146100 Gossypium hirsutum HOM05D003599 ORTHO05D004221 4.5e-51 205.3 194 62.4
SHI28919 Sapria himalayana HOM05D003599 ORTHO05D004221 5.9e-51 204.9 184 59.8
BraA04t16417Z Brassica rapa HOM05D003599 ORTHO05D004221 1.0e-50 204.1 198 60.1
BolC4t25662H Brassica oleracea HOM05D003599 ORTHO05D004221 1.7e-50 203.4 197 60.9
Actinidia31045 Actinidia chinensis HOM05D003599 ORTHO05D004221 8.8e-47 191.0 181 60.8
ATR0605G051 Amborella trichopoda HOM05D003599 ORTHO05D004221 3.3e-46 189.1 198 56.6
Pp3c16_5830 Physcomitrium patens HOM05D003599 ORTHO05D004221 2.2e-42 176.4 185 51.9
SEGI_10833 Sequoiadendron giganteum HOM05D003599 ORTHO05D004221 1.9e-41 173.3 212 47.6
Mapoly0060s0041 Marchantia polymorpha HOM05D003599 ORTHO05D004221 4.7e-40 168.7 206 48.5
SMO141G0154 Selaginella moellendorffii HOM05D003599 ORTHO05D004221 4.0e-39 165.6 193 50.3
CBR_g110 Chara braunii HOM05D003599 ORTHO05D004221 1.4e-36 157.1 198 47.5
Pp3c5_14160 Physcomitrium patens HOM05D003599 ORTHO05D004221 8.9e-31 137.9 185 43.2
HPP92_003005 Vanilla planifolia HOM05D003599 ORTHO05D004221 8.6e-26 121.3 145 50.3
CDE05G2577 Ceratophyllum demersum HOM05D003599 ORTHO05D004221 4.3e-25 119.0 66 81.8
Nn6g34660 Nelumbo nucifera HOM05D003599 ORTHO05D004221 2.9e-21 106.3 66 71.2
Actinidia32321 Actinidia chinensis HOM05D003599 ORTHO05D004221 2.3e-15 86.7 63 73.0
Zm00001eb346130 Zea mays HOM05D003599 ORTHO05D004221 2.3e-15 86.7 119 48.7
Cfa022140 Carpinus fangiana HOM05D003599 ORTHO05D004221 2.4e-12 76.6 77 41.6
SGA_v2.0_scaffold66G22383 Striga asiatica HOM05D000969 ORTHO05D004221 9.2e-12 74.7 47 66.0
SGA_v2.0_scaffold66G22257 Striga asiatica HOM05D003599 ORTHO05D004221 3.9e-10 69.3 48 62.5
CDE05G2426 Ceratophyllum demersum HOM05D003599 ORTHO05D004221 8.6e-10 68.2 59 62.7


User provided reference genes

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