Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G030600 Glycine max HOM05D003448 ORTHO05D004028 2.3e-174 615.5 325 100.0
VMungo0251G1914 Vigna mungo HOM05D003448 ORTHO05D004028 1.0e-65 254.6 314 53.5
Phvul.002G168700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 2.8e-63 246.5 314 53.5
VMungo0251G3339 Vigna mungo HOM05D003448 ORTHO05D004028 9.0e-62 241.5 323 48.0
Glyma.20G030700 Glycine max HOM05D003448 ORTHO05D004028 5.3e-54 215.7 319 48.3
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 2.7e-42 176.8 338 40.2
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 4.6e-42 176.0 331 40.8
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 1.8e-41 174.1 339 38.9
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 3.0e-41 173.3 333 41.7
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 7.4e-40 168.7 329 39.2
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 6.9e-38 162.2 331 38.4
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 9.0e-38 161.8 329 39.8
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 2.0e-37 160.6 330 38.8
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 2.0e-37 160.6 342 38.3
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 2.6e-37 160.2 336 38.1
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 2.6e-37 160.2 348 39.1
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 4.5e-37 159.5 333 39.0
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 1.0e-36 158.3 320 38.8
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.3e-36 157.9 333 39.0
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 2.2e-36 157.1 332 38.6
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 2.2e-36 157.1 344 38.7
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 1.4e-35 154.5 328 39.6
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 7.2e-35 152.1 332 39.5
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.6e-34 151.0 340 37.9
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 3.6e-34 149.8 335 37.6
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 4.6e-34 149.4 330 37.9
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 4.6e-34 149.4 336 36.6
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 6.1e-34 149.1 330 36.4
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 7.9e-34 148.7 341 37.8
Medtr4g082550 Medicago truncatula HOM05D003448 ORTHO05D004028 6.7e-33 145.6 348 35.6
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 6.7e-33 145.6 330 37.9
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 6.7e-33 145.6 335 36.4
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 8.7e-33 145.2 333 39.0
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 8.7e-33 145.2 329 36.2
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 4.3e-32 142.9 334 36.5
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 4.3e-32 142.9 340 38.5
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 7.4e-32 142.1 337 38.0
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 1.6e-31 141.0 328 37.2
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 2.2e-31 140.6 330 34.5
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 2.2e-31 140.6 330 41.2
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 2.2e-31 140.6 325 36.0
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 2.8e-31 140.2 323 36.5
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 6.3e-31 139.0 333 36.3
Lalb_Chr09g0329141 Lupinus albus HOM05D003448 ORTHO05D004028 2.4e-30 137.1 199 50.3
CANSAT64G0892 Cannabis sativa HOM05D003448 ORTHO05D004028 3.1e-30 136.7 329 34.3
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 4.1e-30 136.3 335 37.3
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 5.3e-30 136.0 328 37.5
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 6.9e-30 135.6 322 37.0
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 5.9e-29 132.5 337 33.8
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 7.7e-29 132.1 333 35.7
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 7.7e-29 132.1 331 35.6
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 7.7e-29 132.1 322 36.3
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 1.0e-28 131.7 340 36.5
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 1.3e-28 131.3 336 36.3
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 2.2e-28 130.6 327 35.8
Lalb_Chr05g0220181 Lupinus albus HOM05D003448 ORTHO05D004028 3.8e-28 129.8 300 37.0
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 3.8e-28 129.8 328 36.3
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 3.8e-28 129.8 328 36.3
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 5.0e-28 129.4 324 34.6
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 8.5e-28 128.6 322 35.7
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 8.5e-28 128.6 323 34.4
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 1.1e-27 128.3 323 35.9
Psat7g153440 Pisum sativum HOM05D003448 ORTHO05D004028 1.4e-27 127.9 307 36.5
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 3.2e-27 126.7 335 34.9
BcaB07g30304 Brassica carinata HOM05D003448 ORTHO05D004028 3.2e-27 126.7 336 34.8
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 4.2e-27 126.3 334 35.9
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 4.2e-27 126.3 327 33.6
Psat7g135520 Pisum sativum HOM05D003448 ORTHO05D004028 7.2e-27 125.6 306 37.9
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 1.2e-26 124.8 329 35.6
Medtr4g082360 Medicago truncatula HOM05D003448 ORTHO05D004028 1.2e-26 124.8 304 37.2
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 1.6e-26 124.4 326 36.8
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 1.6e-26 124.4 306 37.3
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 2.1e-26 124.0 320 35.0
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 2.7e-26 123.6 323 34.1
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 6.1e-26 122.5 349 33.5
TPR.G36791 Trifolium pratense HOM05D003448 ORTHO05D004028 7.9e-26 122.1 308 36.0
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 1.8e-25 120.9 340 33.8
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 1.8e-25 120.9 323 35.3
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 3.0e-25 120.2 338 35.8
Lsat_1_v5_gn_8_49260 Lactuca sativa HOM05D003448 ORTHO05D004028 3.0e-25 120.2 324 33.3
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 3.9e-25 119.8 326 37.4
Oeu021088.1 Olea europaea HOM05D003448 ORTHO05D004028 1.1e-24 118.2 320 33.8
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 2.0e-24 117.5 327 32.7
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 2.0e-24 117.5 316 32.6
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 2.0e-24 117.5 329 32.2
Oeu057654.1 Olea europaea HOM05D003448 ORTHO05D004028 2.6e-24 117.1 274 34.7
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 5.7e-24 115.9 332 32.8
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 5.7e-24 115.9 242 39.7
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 7.4e-24 115.5 350 31.7
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 9.7e-24 115.2 303 33.3
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 9.7e-24 115.2 303 33.0
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 1.3e-23 114.8 323 33.7
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 1.7e-23 114.4 333 33.6
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 1.7e-23 114.4 335 32.5
HanXRQChr12g0361771 Helianthus annuus HOM05D003448 ORTHO05D004028 2.2e-23 114.0 324 33.3
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 1.1e-22 111.7 333 33.3
TPR.G38090 Trifolium pratense HOM05D003448 ORTHO05D004028 1.1e-22 111.7 301 35.2
SGA_v2.0_scaffold36G14418 Striga asiatica HOM05D003448 ORTHO05D004028 1.4e-22 111.3 289 33.6
TPR.G11298 Trifolium pratense HOM05D003448 ORTHO05D004028 2.4e-22 110.5 308 33.4
Migut.L01238 Erythranthe guttata HOM05D003448 ORTHO05D004028 4.1e-22 109.8 335 32.5
TAR371G0373 Trochodendron aralioides HOM05D003448 ORTHO05D004028 9.1e-22 108.6 254 38.6
Medtr4g082355 Medicago truncatula HOM05D003448 ORTHO05D004028 2.0e-21 107.5 313 34.2
BcaC04g21492 Brassica carinata HOM05D003448 ORTHO05D004028 2.6e-21 107.1 333 32.7
BolC9t55975H Brassica oleracea HOM05D003448 ORTHO05D004028 2.6e-21 107.1 333 32.7
Haze_11952 Corylus avellana HOM05D003448 ORTHO05D004028 2.6e-21 107.1 166 46.4
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 3.4e-21 106.7 343 31.8
PGSC0003DMG400046292 Solanum tuberosum HOM05D003448 ORTHO05D004028 2.2e-20 104.0 322 31.4
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 2.9e-20 103.6 348 31.3
Medtr4g082365 Medicago truncatula HOM05D003448 ORTHO05D004028 3.8e-20 103.2 287 35.5
CANSAT64G2624 Cannabis sativa HOM05D003448 ORTHO05D004028 5.0e-20 102.8 329 33.7
Sopen05g007670 Solanum pennellii HOM05D003448 ORTHO05D004028 5.0e-20 102.8 336 31.5
C09p31190 Brassica napus HOM05D003448 ORTHO05D004028 6.5e-20 102.4 328 31.7
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 6.5e-20 102.4 329 31.0
Lsat_1_v5_gn_8_49220 Lactuca sativa HOM05D003448 ORTHO05D004028 6.5e-20 102.4 327 32.7
Peaxi162Scf00222g00119 Petunia axillaris HOM05D003448 ORTHO05D004028 6.5e-20 102.4 289 33.9
Lsat_1_v5_gn_8_49240 Lactuca sativa HOM05D003448 ORTHO05D004028 3.2e-19 100.1 324 29.6
Nitab4.5_0000391g0120 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.2e-19 100.1 307 30.3
Nitab4.5_0004471g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 7.2e-19 99.0 307 32.2
AUR62005855 Chenopodium quinoa HOM05D003448 ORTHO05D004028 1.2e-18 98.2 225 36.9
SEGI_06194 Sequoiadendron giganteum HOM05D003448 ORTHO05D004028 1.6e-18 97.8 329 31.9
Nitab4.5_0004471g0060 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.7e-18 97.1 324 29.9
Migut.L01240 Erythranthe guttata HOM05D003448 ORTHO05D004028 3.6e-18 96.7 305 29.5
Lsat_1_v5_gn_8_49200 Lactuca sativa HOM05D003448 ORTHO05D004028 4.7e-18 96.3 321 31.8
Sopen05g007660 Solanum pennellii HOM05D003448 ORTHO05D004028 4.7e-18 96.3 332 31.6
BcaC03g17209 Brassica carinata HOM05D003448 ORTHO05D004028 1.4e-17 94.7 252 35.3
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 1.8e-17 94.4 334 32.6
SalBow2G2818 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.5e-16 91.3 325 30.2
Cc11_g07300 Coffea canephora HOM05D003448 ORTHO05D004028 2.0e-16 90.9 294 31.6
Eucgr.G02473 Eucalyptus grandis HOM05D003448 ORTHO05D004028 2.0e-16 90.9 260 35.0
SalBow2G2515 Salvia bowleyana HOM05D003448 ORTHO05D004028 3.3e-16 90.1 325 29.8
Nitab4.5_0000391g0160 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.7e-15 87.8 310 30.0
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 2.2e-15 87.4 338 30.5
SalBow2G2694 Salvia bowleyana HOM05D003448 ORTHO05D004028 3.7e-15 86.7 321 28.7
Sopen05g007650 Solanum pennellii HOM05D003448 ORTHO05D004028 3.7e-15 86.7 249 33.7
HanXRQChr12g0362021 Helianthus annuus HOM05D003448 ORTHO05D004028 2.4e-14 84.0 223 33.2
Nitab4.5_0000391g0110 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.1e-14 83.6 299 30.1
Sopen05g007690 Solanum pennellii HOM05D003448 ORTHO05D004028 5.3e-14 82.8 296 29.1
Solyc04g005530.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 7.0e-14 82.4 183 38.3
Solyc05g012860.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 7.0e-14 82.4 235 30.6
C02p51370 Brassica napus HOM05D003448 ORTHO05D004028 2.0e-13 80.9 139 40.3
C02p51340 Brassica napus HOM05D003448 ORTHO05D004028 4.5e-13 79.7 139 39.6
Peaxi162Scf00222g00125 Petunia axillaris HOM05D003448 ORTHO05D004028 1.3e-12 78.2 248 31.5
TPR.G34075 Trifolium pratense HOM05D003448 ORTHO05D004028 1.7e-12 77.8 128 41.4
AT2G03330 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 3.8e-12 76.6 192 37.0
ATR0730G136 Amborella trichopoda HOM05D003448 ORTHO05D004028 6.5e-12 75.9 350 29.7
MD16G1066700 Malus domestica HOM05D003448 ORTHO05D004028 1.5e-11 74.7 171 38.0
Solyc05g012850.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 1.5e-11 74.7 225 33.8
ECA246G1613 Erigeron canadensis HOM05D003448 ORTHO05D004028 3.2e-11 73.6 145 36.6
PGSC0003DMG400028404 Solanum tuberosum HOM05D003448 ORTHO05D004028 5.5e-11 72.8 289 31.1
Nitab4.5_0000014g0220 Nicotiana tabacum HOM05D003448 ORTHO05D004028 7.2e-11 72.4 219 33.8
RcHm_v2.0_Chr3g0487681 Rosa chinensis HOM05D017210 ORTHO05D019186 1.6e-10 71.2 301 32.6
HanXRQChr12g0361861 Helianthus annuus HOM05D003448 ORTHO05D004028 2.7e-10 70.5 144 34.7
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 1.4e-09 68.2 211 33.2
MD12G1099700 Malus domestica HOM05D003448 ORTHO05D004028 6.7e-09 65.9 115 37.4
unitig_699.g19913 Utricularia gibba HOM05D003448 ORTHO05D004028 1.2e-08 65.1 142 35.9
Peaxi162Scf00187g00126 Petunia axillaris HOM05D003448 ORTHO05D004028 1.5e-08 64.7 193 33.2
COL.COLO4_27959 Corchorus olitorius HOM05D003448 ORTHO05D004028 2.6e-08 63.9 324 27.8
SEGI_11541 Sequoiadendron giganteum HOM05D000043 ORTHO05D001371 2.2e-07 60.8 148 37.2
Solyc05g012810.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 4.8e-07 59.7 175 34.9
Lsat_1_v5_gn_6_97761 Lactuca sativa HOM05D001062 ORTHO05D000884 1.1e-06 58.5 313 23.0
CSS0034838 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 2.4e-06 57.4 289 27.3
FvH4_6g15970 Fragaria vesca HOM05D017210 ORTHO05D019186 3.1e-06 57.0 293 30.0
FAN14G0387 Fragaria x ananassa HOM05D017210 ORTHO05D019186 7.0e-06 55.8 293 30.0
Ah.08g212850 Amaranthus hybridus HOM05D001062 ORTHO05D000884 9.1e-06 55.5 286 27.3
GSVIVG01010000001 Vitis vinifera HOM05D001062 ORTHO05D000884 9.1e-06 55.5 312 26.3


User provided reference genes

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