Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 7.9e-200 700.3 362 100.0
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 2.9e-178 628.6 388 86.1
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 5.0e-170 601.3 363 86.2
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 6.1e-168 594.3 362 84.3
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 3.0e-167 592.0 366 86.1
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 6.7e-167 590.9 342 88.6
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 6.7e-167 590.9 337 89.0
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 3.1e-164 582.0 363 83.2
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 5.3e-164 581.3 367 83.4
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.2e-163 580.1 361 83.4
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 1.1e-156 557.0 353 81.0
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 1.8e-156 556.2 351 80.6
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 3.1e-156 555.4 348 81.9
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 2.9e-154 548.9 362 77.6
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 2.9e-154 548.9 375 76.3
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 1.9e-153 546.2 361 78.9
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 3.2e-153 545.4 355 76.6
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 3.2e-153 545.4 355 76.6
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 5.5e-153 544.7 323 84.8
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 7.2e-153 544.3 336 81.2
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 7.2e-153 544.3 354 79.1
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 1.6e-152 543.1 351 79.8
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 3.6e-152 542.0 351 79.8
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 4.7e-152 541.6 351 78.1
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 4.7e-152 541.6 352 78.7
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 1.4e-151 540.0 320 84.1
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 2.3e-151 539.3 327 82.6
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 5.2e-151 538.1 352 78.4
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 2.0e-150 536.2 352 78.1
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 3.3e-150 535.4 345 78.0
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 7.5e-150 534.3 327 81.7
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 7.5e-150 534.3 346 78.0
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 1.3e-149 533.5 332 81.0
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 1.3e-149 533.5 352 77.6
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 1.7e-149 533.1 359 76.0
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 4.8e-149 531.6 352 77.3
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 4.8e-149 531.6 347 77.8
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 6.3e-149 531.2 350 78.0
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 8.2e-149 530.8 349 77.9
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 1.1e-148 530.4 334 80.5
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 1.4e-148 530.0 349 77.9
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.4e-148 530.0 352 76.7
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 1.8e-148 529.6 349 77.9
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 1.8e-148 529.6 363 75.8
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 3.1e-148 528.9 312 84.9
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 7.0e-148 527.7 345 75.1
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 1.6e-147 526.6 320 82.5
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 2.0e-147 526.2 350 77.1
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 3.5e-147 525.4 349 76.5
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 3.5e-147 525.4 355 74.6
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 4.5e-147 525.0 337 77.2
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 5.9e-147 524.6 354 76.0
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 7.7e-147 524.2 353 77.1
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 1.0e-146 523.9 350 77.7
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 1.0e-146 523.9 349 78.5
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 1.3e-146 523.5 350 77.7
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 1.3e-146 523.5 380 72.6
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.7e-146 523.1 366 74.3
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 1.7e-146 523.1 279 97.1
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 2.2e-146 522.7 349 77.7
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 2.2e-146 522.7 349 77.7
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 2.2e-146 522.7 349 77.7
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 2.2e-146 522.7 362 74.3
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 2.9e-146 522.3 299 90.6
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 5.0e-146 521.5 351 76.4
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 6.5e-146 521.2 360 72.2
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.5e-145 520.0 354 74.9
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 1.5e-145 520.0 356 74.7
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 1.9e-145 519.6 349 76.5
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.9e-145 519.6 320 82.5
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.2e-145 518.5 334 78.4
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.2e-145 518.5 334 78.4
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 7.2e-145 517.7 357 74.5
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 7.2e-145 517.7 357 74.5
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 7.2e-145 517.7 357 74.5
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 9.4e-145 517.3 356 75.3
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 4.7e-144 515.0 354 75.1
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 8.0e-144 514.2 351 75.2
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 1.4e-143 513.5 340 77.4
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 1.8e-143 513.1 329 78.4
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 2.3e-143 512.7 331 78.5
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 9.8e-142 507.3 352 72.4
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 2.8e-141 505.8 313 80.8
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 6.3e-141 504.6 328 77.7
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 9.1e-140 500.7 314 78.3
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 9.1e-140 500.7 327 76.5
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 9.1e-140 500.7 353 74.5
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 1.2e-139 500.4 353 71.7
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 1.2e-139 500.4 296 81.8
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 7.7e-139 497.7 290 85.2
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 7.7e-139 497.7 336 75.9
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 1.7e-138 496.5 346 73.1
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.1e-137 493.8 318 76.7
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 4.2e-137 491.9 355 69.9
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 5.5e-137 491.5 346 74.0
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 2.1e-136 489.6 300 79.3
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.4e-135 486.9 341 74.8
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 1.7e-133 479.9 337 73.6
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.8e-133 479.2 332 75.3
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 6.3e-133 478.0 343 72.9
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 2.4e-132 476.1 296 78.7
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 4.1e-132 475.3 301 77.1
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 9.2e-132 474.2 358 72.1
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 1.2e-131 473.8 326 75.2
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 5.9e-131 471.5 377 67.4
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 1.7e-130 469.9 340 73.5
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.1e-129 467.2 344 67.7
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 1.6e-128 463.4 314 75.2
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 2.8e-128 462.6 346 68.8
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.0e-127 460.7 309 74.4
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 3.4e-126 455.7 312 73.1
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 1.1e-124 450.7 298 77.2
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 1.4e-124 450.3 401 60.6
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 2.0e-123 446.4 362 66.0
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 2.3e-122 443.0 344 65.4
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 3.9e-122 442.2 324 67.6
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 5.6e-121 438.3 354 66.9
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 7.3e-121 438.0 351 69.2
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 5.8e-118 428.3 329 66.0
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 2.0e-115 419.9 312 71.2
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 4.3e-113 412.1 349 62.2
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 4.3e-113 412.1 349 62.2
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 4.0e-111 405.6 341 64.5
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 5.8e-110 401.7 350 62.9
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 3.2e-108 396.0 295 69.8
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 6.6e-106 388.3 270 73.0
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 6.6e-106 388.3 235 82.6
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 5.6e-105 385.2 241 80.5
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 7.3e-105 384.8 301 64.8
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 6.8e-103 378.3 298 66.8
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 5.8e-94 348.6 225 77.8
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.0e-90 337.8 229 75.5
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.4e-87 326.6 353 53.8
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 3.4e-86 322.8 210 72.9
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.9e-85 318.9 232 72.0
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.2e-76 289.7 259 63.7
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 3.5e-75 286.2 197 75.6
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 9.3e-68 261.5 186 72.6
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.5e-62 244.2 164 78.7
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.0e-62 243.8 174 70.1
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 7.4e-41 172.2 119 70.6
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.4e-39 167.9 117 69.2
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.2e-38 164.9 124 65.3
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 5.5e-36 156.0 126 65.1
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 1.4e-34 151.4 117 74.4
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 2.4e-31 140.6 83 79.5
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 3.1e-31 140.2 123 62.6
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.7e-29 134.4 87 73.6
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 3.8e-29 133.3 115 65.2
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 3.6e-27 126.7 142 50.7
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.2e-25 121.7 294 29.3
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 7.5e-25 119.0 88 70.5
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 9.1e-23 112.1 83 63.9
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 1.6e-22 111.3 79 81.0
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 6.5e-21 105.9 89 59.6
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 4.0e-18 96.7 73 57.5
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.2e-17 95.1 56 73.2
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 2.8e-16 90.5 73 69.9
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 8.0e-11 72.4 43 72.1


User provided reference genes

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