Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 3.6e-263 911.0 449 100.0
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 2.5e-235 818.5 434 93.8
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.4e-193 679.9 436 77.8
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 4.4e-192 674.9 436 77.3
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 1.3e-191 673.3 439 77.4
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 2.8e-191 672.2 437 76.0
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 6.3e-191 671.0 438 76.7
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 1.4e-190 669.8 438 76.9
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 5.4e-190 667.9 438 76.9
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 1.2e-189 666.8 416 80.0
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 1.6e-189 666.4 434 75.3
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 1.6e-186 656.4 432 77.1
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 2.6e-184 649.0 414 76.3
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 4.4e-184 648.3 430 77.0
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 4.9e-183 644.8 451 73.4
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 4.3e-179 631.7 435 74.0
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 1.8e-177 626.3 436 73.2
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 2.3e-177 625.9 453 70.4
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 4.4e-176 621.7 452 69.5
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 7.5e-176 620.9 453 70.0
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 8.3e-175 617.5 439 73.6
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.9e-174 616.3 452 68.8
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.9e-174 616.3 452 68.8
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 7.0e-174 614.4 452 68.8
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 6.0e-173 611.3 448 69.4
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 1.3e-172 610.1 452 68.4
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 1.3e-172 610.1 429 69.0
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.3e-172 609.4 452 68.1
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 5.0e-172 608.2 456 68.0
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.5e-171 606.7 452 68.1
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 4.3e-171 605.1 437 69.6
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 2.3e-169 599.4 438 68.5
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 5.2e-169 598.2 449 67.5
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 5.2e-169 598.2 410 74.9
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 6.8e-169 597.8 440 68.6
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 8.9e-169 597.4 437 69.8
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.2e-168 597.0 440 68.4
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 2.6e-168 595.9 452 67.5
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 7.5e-168 594.3 449 67.7
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 9.8e-168 594.0 453 66.9
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 1.7e-167 593.2 455 67.7
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 2.2e-167 592.8 438 67.8
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.7e-167 592.0 451 65.9
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 1.1e-166 590.5 449 67.3
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 2.4e-166 589.3 438 67.1
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 5.4e-166 588.2 427 66.5
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 7.0e-166 587.8 426 67.6
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 2.1e-165 586.3 453 66.2
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 2.7e-165 585.9 455 65.9
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.5e-165 585.5 451 66.5
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 1.0e-164 583.9 450 64.0
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 1.2e-162 577.0 449 66.6
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.4e-161 573.5 455 65.3
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 2.3e-161 572.8 421 66.3
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 3.1e-161 572.4 447 64.7
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 6.8e-161 571.2 418 70.1
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 6.8e-161 571.2 455 65.1
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 6.8e-161 571.2 351 80.1
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 1.2e-160 570.5 409 67.0
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 2.0e-160 569.7 429 66.4
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 4.4e-160 568.5 447 64.2
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 7.5e-160 567.8 426 66.0
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 2.2e-159 566.2 448 64.5
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 6.4e-159 564.7 447 63.8
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 2.4e-158 562.8 430 64.7
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 3.2e-158 562.4 452 63.3
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 1.2e-157 560.5 435 63.0
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.6e-157 560.1 455 64.2
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 1.6e-157 560.1 432 65.5
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 6.0e-157 558.1 429 64.3
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 6.0e-157 558.1 430 64.7
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 5.1e-156 555.1 445 61.8
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 1.1e-155 553.9 436 63.8
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 4.7e-154 548.5 451 63.6
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 6.2e-154 548.1 437 62.7
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 8.1e-154 547.7 438 64.2
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 8.1e-154 547.7 438 64.2
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 1.4e-153 547.0 406 68.2
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 1.4e-153 547.0 442 61.3
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 4.4e-152 542.0 436 60.8
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 1.9e-150 536.6 436 61.0
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 7.1e-150 534.6 436 62.2
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 1.9e-147 526.6 445 62.5
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 2.5e-147 526.2 433 62.4
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 5.6e-147 525.0 445 61.1
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 5.6e-147 525.0 436 61.2
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 3.1e-145 519.2 433 61.9
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 3.1e-145 519.2 441 61.7
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 3.1e-145 519.2 436 62.6
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 2.6e-144 516.2 433 62.4
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 1.7e-143 513.5 441 61.2
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 1.7e-143 513.5 437 60.9
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 1.7e-143 513.5 439 62.0
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 2.2e-143 513.1 427 61.6
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 2.2e-143 513.1 452 59.7
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 2.2e-143 513.1 438 59.6
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 8.4e-143 511.1 438 61.0
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.1e-142 510.8 347 71.8
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 1.1e-142 510.8 375 66.4
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 5.4e-142 508.4 437 60.9
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 9.3e-142 507.7 437 62.2
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 9.3e-142 507.7 437 62.2
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 2.7e-141 506.1 438 61.0
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 4.6e-141 505.4 436 60.8
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 4.6e-141 505.4 427 61.6
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 1.3e-140 503.8 433 61.0
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.3e-140 503.8 456 59.6
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 3.9e-140 502.3 439 60.8
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 1.9e-139 500.0 388 66.5
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 1.9e-139 500.0 388 66.5
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 1.9e-139 500.0 437 61.3
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 9.6e-139 497.7 456 59.0
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 4.0e-137 492.3 430 56.0
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 7.6e-136 488.0 426 56.3
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 4.9e-135 485.3 348 68.1
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 1.9e-134 483.4 437 54.9
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 7.1e-134 481.5 368 64.7
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 2.3e-132 476.5 347 66.0
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 3.9e-132 475.7 422 58.8
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 3.9e-132 475.7 409 57.0
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 2.6e-128 463.0 452 56.6
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 7.6e-128 461.5 352 64.8
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.9e-126 456.8 436 56.4
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 1.5e-120 437.2 321 67.6
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.8e-116 423.7 334 62.6
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 2.6e-112 409.8 351 60.7
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 2.2e-106 390.2 434 50.0
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 1.0e-103 381.3 325 59.1
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 1.0e-103 381.3 325 59.1
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 7.2e-102 375.2 379 54.9
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.1e-91 341.3 384 49.7
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 1.4e-89 334.3 378 48.1
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 3.5e-88 329.7 241 69.7
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 1.2e-83 314.7 193 79.8
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 5.7e-67 259.2 328 46.3
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.3e-63 248.1 246 54.5
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 5.2e-60 236.1 148 75.7
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 3.9e-55 219.9 267 48.3
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 2.8e-53 213.8 166 64.5
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 1.1e-36 158.7 153 52.3
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 9.9e-35 152.1 109 68.8
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 9.6e-30 135.6 173 49.7
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 2.4e-28 131.0 111 65.8
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 2.0e-27 127.9 112 63.4
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 2.1e-24 117.9 97 56.7
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 1.1e-09 68.9 54 64.8
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 2.3e-07 61.2 52 53.8


User provided reference genes

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