Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 3.4e-47 191.4 105 100.0
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 8.2e-41 170.2 105 81.0
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 2.2e-38 162.2 105 77.1
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.2e-36 156.4 105 74.3
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 1.5e-34 149.4 104 76.0
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 4.4e-34 147.9 104 76.0
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 4.8e-33 144.4 103 75.7
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 4.1e-32 141.4 103 71.8
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 7.0e-32 140.6 105 73.3
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 7.0e-32 140.6 105 72.4
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 2.6e-31 138.7 102 71.6
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.5e-29 132.9 105 64.8
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 1.5e-29 132.9 95 73.7
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 2.5e-29 132.1 95 69.5
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 5.5e-29 131.0 95 71.6
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.6e-28 129.4 105 63.8
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 1.6e-28 129.4 95 70.5
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 4.7e-28 127.9 95 69.5
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 1.8e-27 125.9 95 67.4
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 1.8e-27 125.9 95 67.4
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 4.0e-27 124.8 96 63.5
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 5.2e-27 124.4 94 70.2
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 6.7e-27 124.0 95 66.3
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 8.8e-27 123.6 95 67.4
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 1.5e-26 122.9 98 65.3
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.5e-26 122.9 95 67.4
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 1.5e-26 122.9 104 64.4
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 1.5e-26 122.9 95 66.3
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 1.5e-26 122.9 95 67.4
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 2.0e-26 122.5 95 67.4
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 2.6e-26 122.1 96 65.6
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 3.3e-26 121.7 94 68.1
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 3.3e-26 121.7 104 61.5
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 4.4e-26 121.3 96 63.5
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 5.7e-26 120.9 95 65.3
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 5.7e-26 120.9 95 66.3
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 5.7e-26 120.9 104 59.6
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 7.5e-26 120.6 95 63.2
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 7.5e-26 120.6 95 63.2
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 7.5e-26 120.6 96 64.6
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 9.7e-26 120.2 95 63.2
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 9.7e-26 120.2 95 63.2
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 1.3e-25 119.8 95 65.3
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 1.7e-25 119.4 95 62.1
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 1.7e-25 119.4 95 66.3
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.2e-25 119.0 96 62.5
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 2.8e-25 118.6 93 64.5
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 3.7e-25 118.2 95 62.1
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 4.8e-25 117.9 95 61.1
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 4.8e-25 117.9 95 61.1
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 4.8e-25 117.9 95 63.2
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 4.8e-25 117.9 96 63.5
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 4.8e-25 117.9 96 63.5
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 8.2e-25 117.1 94 68.1
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 8.2e-25 117.1 95 61.1
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 1.1e-24 116.7 102 57.8
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 1.1e-24 116.7 94 64.9
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.4e-24 115.5 95 62.1
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.4e-24 115.5 95 62.1
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 3.1e-24 115.2 95 60.0
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.1e-24 115.2 95 64.2
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.1e-24 115.2 95 64.2
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.1e-24 115.2 95 64.2
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 3.1e-24 115.2 100 61.0
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 4.1e-24 114.8 95 62.1
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 5.3e-24 114.4 95 60.0
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 5.3e-24 114.4 95 60.0
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 5.3e-24 114.4 95 64.2
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 5.3e-24 114.4 96 62.5
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 9.1e-24 113.6 95 64.2
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 9.1e-24 113.6 95 64.2
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 9.1e-24 113.6 96 63.5
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 1.2e-23 113.2 95 64.2
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.2e-23 113.2 95 63.2
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 1.2e-23 113.2 95 58.9
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 1.2e-23 113.2 95 58.9
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.6e-23 112.8 95 63.2
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 2.0e-23 112.5 95 61.1
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.0e-23 112.5 95 63.2
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 2.7e-23 112.1 89 68.5
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 2.7e-23 112.1 95 64.2
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 3.5e-23 111.7 96 63.5
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 5.9e-23 110.9 95 60.0
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 5.9e-23 110.9 103 60.2
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 2.2e-22 109.0 94 61.7
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 6.5e-22 107.5 95 58.9
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 8.5e-22 107.1 89 62.9
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 8.5e-22 107.1 96 62.5
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 1.9e-21 105.9 89 64.0
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 2.5e-21 105.5 93 59.1
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 3.2e-21 105.1 83 63.9
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 5.5e-21 104.4 101 59.4
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 7.2e-21 104.0 95 56.8
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 1.4e-19 99.8 136 45.6
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 3.0e-19 98.6 95 58.9
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.3e-17 93.2 95 50.5
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 7.0e-16 87.4 90 53.3
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 7.0e-16 87.4 78 60.3
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 2.0e-15 85.9 85 55.3
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 3.5e-15 85.1 50 78.0
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.9e-13 79.3 76 53.9
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 4.2e-13 78.2 81 54.3
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 2.7e-12 75.5 95 43.2
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 6.1e-12 74.3 95 41.1
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 3.4e-10 68.6 47 70.2
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.7e-09 66.2 47 61.7
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 3.7e-09 65.1 40 72.5
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 3.7e-09 65.1 95 41.1
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 8.3e-09 63.9 41 75.6


User provided reference genes

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