Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 1.2e-79 299.7 142 100.0
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 4.6e-71 271.2 147 87.1
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 1.3e-70 269.6 139 89.2
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 4.0e-67 258.1 141 83.7
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 1.3e-65 253.1 147 79.6
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 1.7e-65 252.7 136 83.1
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 6.5e-65 250.8 144 79.9
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 1.1e-64 250.0 147 78.9
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 2.7e-63 245.4 144 79.2
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 7.9e-63 243.8 145 77.9
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 1.6e-60 236.1 143 77.6
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 2.8e-60 235.3 144 74.3
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 1.4e-59 233.0 133 77.4
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 1.5e-58 229.6 132 78.0
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 1.3e-57 226.5 134 71.6
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 1.7e-57 226.1 132 75.8
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 2.9e-57 225.3 132 77.3
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 2.9e-57 225.3 137 72.3
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 2.9e-57 225.3 135 74.1
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 5.0e-57 224.6 135 74.8
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 1.1e-56 223.4 134 70.9
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 2.5e-56 222.2 138 69.6
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 3.2e-56 221.9 135 74.1
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 3.2e-56 221.9 145 69.7
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 4.2e-56 221.5 135 71.1
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 9.3e-56 220.3 133 73.7
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 1.2e-55 219.9 133 70.7
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 2.7e-55 218.8 133 69.9
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 1.8e-54 216.1 133 70.7
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.8e-54 216.1 133 69.9
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 3.0e-54 215.3 132 71.2
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 3.9e-54 214.9 130 71.5
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 5.1e-54 214.5 123 79.7
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 1.1e-53 213.4 135 68.1
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 1.5e-53 213.0 132 69.7
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 1.9e-53 212.6 130 70.8
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 1.9e-53 212.6 137 67.2
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 2.5e-53 212.2 140 65.7
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 2.5e-53 212.2 131 71.0
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 3.3e-53 211.8 135 67.4
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 5.7e-53 211.1 135 68.1
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 1.6e-52 209.5 137 66.4
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 1.6e-52 209.5 137 66.4
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 1.6e-52 209.5 132 69.7
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.6e-52 209.5 132 68.9
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.6e-52 209.5 133 68.4
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.2e-52 209.1 133 67.7
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.2e-52 209.1 135 67.4
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.2e-52 209.1 133 68.4
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 2.2e-52 209.1 133 68.4
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 2.8e-52 208.8 133 66.9
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 3.7e-52 208.4 133 67.7
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 4.8e-52 208.0 137 65.0
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 4.8e-52 208.0 133 67.7
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 4.8e-52 208.0 130 69.2
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 4.8e-52 208.0 133 66.9
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 6.3e-52 207.6 135 66.7
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 6.3e-52 207.6 130 69.2
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 8.2e-52 207.2 135 66.7
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 1.1e-51 206.8 135 65.9
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 1.1e-51 206.8 135 65.9
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 1.1e-51 206.8 135 65.9
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 1.1e-51 206.8 132 67.4
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 1.4e-51 206.5 141 68.1
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 1.4e-51 206.5 130 70.0
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 1.8e-51 206.1 137 65.7
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 1.8e-51 206.1 137 65.7
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 1.8e-51 206.1 137 65.7
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 2.4e-51 205.7 133 66.9
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 3.1e-51 205.3 140 67.1
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 4.1e-51 204.9 128 70.3
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 4.1e-51 204.9 133 66.9
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 5.3e-51 204.5 128 70.3
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 6.9e-51 204.1 133 66.2
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 1.2e-50 203.4 147 62.6
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.2e-50 203.4 129 68.2
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.5e-50 203.0 128 69.5
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 2.0e-50 202.6 135 64.4
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.6e-50 202.2 130 69.2
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 2.6e-50 202.2 132 66.7
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 2.6e-50 202.2 129 68.2
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 2.6e-50 202.2 129 68.2
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 4.5e-50 201.4 128 69.5
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 7.7e-50 200.7 144 61.8
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.3e-49 199.9 133 64.7
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 1.3e-49 199.9 132 66.7
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.7e-49 199.5 143 62.9
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 2.2e-49 199.1 132 65.2
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 2.9e-49 198.7 114 78.9
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 2.9e-49 198.7 135 65.9
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 7.2e-48 194.1 132 65.9
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 2.1e-47 192.6 130 66.2
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 6.1e-47 191.0 214 47.7
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 1.0e-46 190.3 134 66.4
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 1.0e-46 190.3 120 70.0
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 1.4e-46 189.9 125 68.0
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 1.8e-46 189.5 132 63.6
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 3.0e-46 188.7 133 62.4
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 5.1e-46 188.0 132 63.6
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 8.8e-46 187.2 132 63.6
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 8.8e-46 187.2 132 63.6
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 3.3e-45 185.3 133 63.9
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 4.4e-45 184.9 132 65.2
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 5.7e-45 184.5 136 60.3
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 9.7e-45 183.7 126 65.9
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 1.7e-44 183.0 132 62.9
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 5.3e-43 177.9 122 62.3
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 5.9e-42 174.5 128 60.9
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 6.5e-41 171.0 130 60.0
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 1.0e-38 163.7 122 61.5
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.0e-38 163.7 134 55.2
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 6.7e-38 161.0 140 57.1
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 1.1e-37 160.2 211 39.3
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.5e-37 159.8 142 50.7
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 5.7e-37 157.9 133 51.9
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 1.5e-32 143.3 84 75.0
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 4.2e-32 141.7 139 49.6
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 6.1e-31 137.9 137 48.9
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 9.7e-29 130.6 131 46.6
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.7e-28 129.8 91 67.0
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 2.8e-28 129.0 81 69.1
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 8.2e-28 127.5 133 45.1
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 1.8e-27 126.3 133 44.4
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 9.1e-27 124.0 81 69.1
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 4.5e-26 121.7 112 50.0
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 2.2e-25 119.4 119 47.9
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 2.9e-25 119.0 119 47.9
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 5.0e-25 118.2 134 46.3
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 8.5e-25 117.5 82 64.6
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 1.1e-24 117.1 131 42.0
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 1.5e-24 116.7 86 60.5
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 4.2e-24 115.2 138 42.8
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 2.7e-23 112.5 136 44.1
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 2.3e-22 109.4 106 47.2
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 2.0e-21 106.3 177 35.6
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 5.7e-21 104.8 95 50.5
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 1.2e-18 97.1 54 75.9
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 5.9e-18 94.7 86 50.0
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 1.4e-14 83.6 131 30.5
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 8.9e-14 80.9 106 38.7
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 1.5e-13 80.1 130 27.7
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 1.6e-10 70.1 72 44.4
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 2.7e-10 69.3 56 57.1
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.3e-09 67.0 48 58.3
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 6.1e-07 58.2 40 62.5


User provided reference genes

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