Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G015800 Glycine max HOM05D003013 ORTHO05D032900 4.5e-36 154.1 77 100.0
Glyma.03G065400 Glycine max HOM05D003013 ORTHO05D032900 2.7e-33 144.8 74 97.3
Glyma.20G206800 Glycine max HOM05D003013 ORTHO05D003460 4.6e-17 90.9 50 92.0
Glyma.10G183500 Glycine max HOM05D003013 ORTHO05D003460 1.8e-16 89.0 50 90.0
Phvul.010G072949 Phaseolus vulgaris HOM05D003013 ORTHO05D003460 8.7e-16 86.7 50 86.0
VMungo0720G1524 Vigna mungo HOM05D003013 ORTHO05D003460 5.7e-15 84.0 50 84.0
TPR.G21895 Trifolium pratense HOM05D003013 ORTHO05D003460 2.2e-14 82.0 80 57.5
Lalb_Chr21g0312191 Lupinus albus HOM05D003013 ORTHO05D003460 9.1e-13 76.6 50 76.0
Lj5g0003004 Lotus japonicus HOM05D003013 ORTHO05D003460 1.2e-12 76.3 50 76.0
Psat6g124240 Pisum sativum HOM05D003013 ORTHO05D003460 2.0e-12 75.5 50 76.0
Psat6g124200 Pisum sativum HOM05D003013 ORTHO05D003460 7.7e-12 73.6 50 76.0
Medtr1g075540 Medicago truncatula HOM05D003013 ORTHO05D003460 1.0e-11 73.2 49 73.5
arahy.Tifrunner.gnm1.ann1.8ZEA2R Arachis hypogaea HOM05D003013 ORTHO05D003460 1.3e-11 72.8 50 74.0
arahy.Tifrunner.gnm1.ann1.JD61T2 Arachis hypogaea HOM05D003013 ORTHO05D003460 1.3e-11 72.8 50 74.0
Cfa014749 Carpinus fangiana HOM05D003013 ORTHO05D003460 2.2e-11 72.0 50 74.0
Haze_11424 Corylus avellana HOM05D003013 ORTHO05D003460 3.8e-11 71.2 50 74.0
Atru.chr4.2000 Acer truncatum HOM05D003013 ORTHO05D003460 1.1e-10 69.7 50 68.0
Aqoxy5G00181 Aquilegia oxysepala HOM05D003013 ORTHO05D003460 1.1e-10 69.7 50 70.0
CANSAT78G1642 Cannabis sativa HOM05D003013 ORTHO05D003460 1.9e-10 68.9 54 63.0
QL06p019899 Quercus lobata HOM05D003013 ORTHO05D003460 1.9e-10 68.9 51 70.6
CiPaw.02G108900 Carya illinoinensis HOM05D003013 ORTHO05D003460 2.5e-10 68.6 51 68.6
Atru.chr4.2001 Acer truncatum HOM05D003013 ORTHO05D003460 3.2e-10 68.2 65 50.8
AUR62015541 Chenopodium quinoa HOM05D003013 ORTHO05D003460 5.5e-10 67.4 58 62.1
Ciclev10007209m.g Citrus clementina HOM05D003013 ORTHO05D003460 5.5e-10 67.4 51 62.7
MBI07_g31315_MAGBIO Magnolia biondii HOM05D003013 ORTHO05D003460 5.5e-10 67.4 50 66.0
THA.LOC104822235 Tarenaya hassleriana HOM05D003013 ORTHO05D003460 5.5e-10 67.4 49 67.3
CiPaw.01G181100 Carya illinoinensis HOM05D003013 ORTHO05D003460 7.2e-10 67.0 51 66.7
AUR62002168 Chenopodium quinoa HOM05D003013 ORTHO05D003460 7.2e-10 67.0 58 62.1
Ciclev10006005m.g Citrus clementina HOM05D003013 ORTHO05D003460 7.2e-10 67.0 51 64.7
Manes.15G043600 Manihot esculenta HOM05D003013 ORTHO05D003460 7.2e-10 67.0 50 66.0
Prupe.1G044000 Prunus persica HOM05D003013 ORTHO05D003460 7.2e-10 67.0 50 68.0
MBI10_g18937_MAGBIO Magnolia biondii HOM05D003013 ORTHO05D003460 9.4e-10 66.6 49 63.3
PGR004G0773 Punica granatum HOM05D003013 ORTHO05D003460 9.4e-10 66.6 50 66.0
Hund03059 Selenicereus undatus HOM05D003013 ORTHO05D003460 9.4e-10 66.6 64 57.8
TWI09G0025 Tripterygium wilfordii HOM05D003013 ORTHO05D003460 9.4e-10 66.6 49 67.3
Cpa.g.sc44.41 Carica papaya HOM05D003013 ORTHO05D003460 1.6e-09 65.9 73 49.3
Nitab4.5_0004700g0010 Nicotiana tabacum HOM05D003013 ORTHO05D003460 2.1e-09 65.5 51 60.8
TWI53G1337 Tripterygium wilfordii HOM05D003013 ORTHO05D003460 2.1e-09 65.5 49 67.3
TAR362G1161 Trochodendron aralioides HOM05D003013 ORTHO05D003460 2.1e-09 65.5 50 64.0
MD13G1217400 Malus domestica HOM05D003013 ORTHO05D003460 2.7e-09 65.1 50 66.0
BcaB02g08620 Brassica carinata HOM05D003013 ORTHO05D003460 3.6e-09 64.7 49 63.3
BraA04t16470Z Brassica rapa HOM05D003013 ORTHO05D003460 3.6e-09 64.7 54 57.4
Dinv29832 Davidia involucrata HOM05D003013 ORTHO05D003460 3.6e-09 64.7 50 66.0
Lj6A627T16 Lonicera japonica HOM05D003013 ORTHO05D003460 3.6e-09 64.7 50 62.0
Oeu055244.1 Olea europaea HOM05D003013 ORTHO05D003460 3.6e-09 64.7 50 66.0
BcaC02g09334 Brassica carinata HOM05D003013 ORTHO05D032900 4.6e-09 64.3 59 52.5
Thhalv10026334m.g Eutrema salsugineum HOM05D003013 ORTHO05D003460 4.6e-09 64.3 54 57.4
Nn1g02850 Nelumbo nucifera HOM05D003013 ORTHO05D003460 4.6e-09 64.3 50 64.0
EL10Ac3g04975 Beta vulgaris HOM05D003013 ORTHO05D003460 6.1e-09 63.9 58 56.9
CARHR220490 Cardamine hirsuta HOM05D003013 ORTHO05D003460 6.1e-09 63.9 49 63.3
CDE02G3041 Ceratophyllum demersum HOM05D003013 ORTHO05D003460 6.1e-09 63.9 50 62.0
COL.COLO4_15924 Corchorus olitorius HOM05D003013 ORTHO05D003460 6.1e-09 63.9 50 64.0
A04p07820 Brassica napus HOM05D003013 ORTHO05D003460 7.9e-09 63.5 49 61.2
C04p41450 Brassica napus HOM05D003013 ORTHO05D003460 7.9e-09 63.5 49 61.2
BolC4t25726H Brassica oleracea HOM05D003013 ORTHO05D003460 7.9e-09 63.5 49 61.2
Aqoxy1G03111 Aquilegia oxysepala HOM05D003013 ORTHO05D003460 1.0e-08 63.2 47 63.8
AT4G14305 Arabidopsis thaliana HOM05D003013 ORTHO05D003460 1.0e-08 63.2 49 61.2
Duzib151G0688 Durio zibethinus HOM05D003013 ORTHO05D003460 1.0e-08 63.2 50 62.0
Hma1.2p1_0112F.1_g054410 Hydrangea macrophylla HOM05D003013 ORTHO05D003460 1.0e-08 63.2 50 64.0
Eucgr.H03015 Eucalyptus grandis HOM05D003013 ORTHO05D003460 1.4e-08 62.8 50 60.0
PSO832G3829 Papaver somniferum HOM05D003013 ORTHO05D003460 1.4e-08 62.8 53 56.6
Thecc.04G259600 Theobroma cacao HOM05D003013 ORTHO05D003460 1.4e-08 62.8 50 60.0
TAR624G0707 Trochodendron aralioides HOM05D003013 ORTHO05D003460 1.4e-08 62.8 72 47.2
CAN.G1234.3 Capsicum annuum HOM05D003013 ORTHO05D003460 2.3e-08 62.0 50 60.0
COL.COLO4_31800 Corchorus olitorius HOM05D003013 ORTHO05D003460 2.3e-08 62.0 50 64.0
GSVIVG01027860001 Vitis vinifera HOM05D003013 ORTHO05D003460 2.3e-08 62.0 50 60.0
AL7G41960 Arabidopsis lyrata HOM05D003013 ORTHO05D003460 3.0e-08 61.6 49 59.2
FvH4_4g04080 Fragaria vesca HOM05D003013 ORTHO05D003460 3.0e-08 61.6 54 57.4
FAN22G1503 Fragaria x ananassa HOM05D003013 ORTHO05D003460 3.0e-08 61.6 54 57.4
RcHm_v2.0_Chr4g0394471 Rosa chinensis HOM05D003013 ORTHO05D003460 3.0e-08 61.6 54 57.4
Hund11912 Selenicereus undatus HOM05D003013 ORTHO05D003460 3.0e-08 61.6 54 57.4
PGSC0003DMG400016295 Solanum tuberosum HOM05D003013 ORTHO05D003460 3.0e-08 61.6 49 61.2
Thecc.06G224100 Theobroma cacao HOM05D003013 ORTHO05D003460 3.0e-08 61.6 62 54.8
Gohir.A09G228500 Gossypium hirsutum HOM05D003013 ORTHO05D003460 3.9e-08 61.2 50 58.0
Gohir.D09G229600 Gossypium hirsutum HOM05D003013 ORTHO05D003460 3.9e-08 61.2 50 58.0
Gorai.006G252300 Gossypium raimondii HOM05D003013 ORTHO05D003460 3.9e-08 61.2 50 58.0
Nn1g07196 Nelumbo nucifera HOM05D003013 ORTHO05D003460 3.9e-08 61.2 65 47.7
Pp3c12_11600 Physcomitrium patens HOM05D003013 ORTHO05D003460 3.9e-08 61.2 54 57.4
SEGI_39887 Sequoiadendron giganteum HOM05D003013 ORTHO05D003460 3.9e-08 61.2 50 58.0
Zm00001eb175590 Zea mays HOM05D003013 ORTHO05D003460 3.9e-08 61.2 50 64.0
ATR0736G222 Amborella trichopoda HOM05D003013 ORTHO05D003460 5.1e-08 60.8 50 62.0
Carub.0007s2799 Capsella rubella HOM05D003013 ORTHO05D003460 6.7e-08 60.5 49 59.2
ClCG06G007120 Citrullus lanatus HOM05D003013 ORTHO05D003460 6.7e-08 60.5 50 64.0
Gohir.A05G171800 Gossypium hirsutum HOM05D003013 ORTHO05D003460 6.7e-08 60.5 62 56.5
Gohir.D05G174900 Gossypium hirsutum HOM05D003013 ORTHO05D003460 6.7e-08 60.5 62 56.5
Gorai.009G180200 Gossypium raimondii HOM05D003013 ORTHO05D003460 6.7e-08 60.5 62 56.5
Potri.010G068900 Populus trichocarpa HOM05D003013 ORTHO05D003460 6.7e-08 60.5 50 58.0
Aa31LG9G3060 Aethionema arabicum HOM05D003013 ORTHO05D003460 8.8e-08 60.1 49 59.2
Sed0019923 Sechium edule HOM05D003013 ORTHO05D003460 8.8e-08 60.1 49 65.3
Solyc06g053550.3 Solanum lycopersicum HOM05D003013 ORTHO05D003460 8.8e-08 60.1 49 61.2
Sopen06g018640 Solanum pennellii HOM05D003013 ORTHO05D003460 8.8e-08 60.1 49 61.2
HPP92_028135 Vanilla planifolia HOM05D003013 ORTHO05D003460 8.8e-08 60.1 50 60.0
PSO675G9249 Papaver somniferum HOM05D003013 ORTHO05D003460 1.1e-07 59.7 55 56.4
HPP92_005247 Vanilla planifolia HOM05D003013 ORTHO05D003460 1.5e-07 59.3 63 54.0
Mapoly0046s0007 Marchantia polymorpha HOM05D003013 ORTHO05D003460 2.0e-07 58.9 55 56.4
Sed0013412 Sechium edule HOM05D003013 ORTHO05D003460 2.0e-07 58.9 49 65.3
vmacro15460 Vaccinium macrocarpon HOM05D003013 ORTHO05D003460 2.0e-07 58.9 51 56.9
Cfa000190 Carpinus fangiana HOM05D003013 ORTHO05D003460 2.6e-07 58.5 64 50.0
Carub.0006s3226 Capsella rubella HOM05D003013 ORTHO05D003460 3.3e-07 58.2 49 57.1
Duzib192G0807 Durio zibethinus HOM05D003013 ORTHO05D003460 3.3e-07 58.2 41 73.2
Sc24g0000230 Simmondsia chinensis HOM05D003013 ORTHO05D003460 3.3e-07 58.2 62 51.6
TAR626G1541 Trochodendron aralioides HOM05D003013 ORTHO05D003460 3.3e-07 58.2 63 50.8
CARHR253040 Cardamine hirsuta HOM05D003013 ORTHO05D003460 4.4e-07 57.8 49 57.1
Os08g0566900 Oryza sativa ssp. japonica HOM05D003013 ORTHO05D003460 4.4e-07 57.8 49 61.2
Pp3c4_8190 Physcomitrium patens HOM05D003013 ORTHO05D003460 4.4e-07 57.8 57 54.4
Pp3c4_8250 Physcomitrium patens HOM05D003013 ORTHO05D003460 4.4e-07 57.8 57 54.4
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 4.4e-07 57.8 57 56.1
AT4G04470 Arabidopsis thaliana HOM05D003013 ORTHO05D003460 5.7e-07 57.4 41 65.9
BcaB01g01806 Brassica carinata HOM05D003013 ORTHO05D003460 5.7e-07 57.4 41 65.9
BcaC04g21291 Brassica carinata HOM05D003013 ORTHO05D003460 5.7e-07 57.4 41 65.9
A09p26330 Brassica napus HOM05D003013 ORTHO05D003460 5.7e-07 57.4 41 65.9
C09p33490 Brassica napus HOM05D003013 ORTHO05D003460 5.7e-07 57.4 41 65.9
BolC9t56185H Brassica oleracea HOM05D003013 ORTHO05D003460 5.7e-07 57.4 41 65.9
BraA09t38206Z Brassica rapa HOM05D003013 ORTHO05D003460 5.7e-07 57.4 41 65.9
MELO3C023014.2 Cucumis melo HOM05D003013 ORTHO05D003460 5.7e-07 57.4 49 61.2
CsaV3_2G012630 Cucumis sativus L. HOM05D003013 ORTHO05D003460 5.7e-07 57.4 49 61.2
Sp6g04430 Schrenkiella parvula HOM05D003013 ORTHO05D003460 5.7e-07 57.4 41 65.9
vmacro15797 Vaccinium macrocarpon HOM05D003013 ORTHO05D003460 5.7e-07 57.4 41 70.7
AL6G47940 Arabidopsis lyrata HOM05D003013 ORTHO05D003460 7.4e-07 57.0 49 57.1
MSTRG.14636 Avicennia marina HOM05D003013 ORTHO05D003460 7.4e-07 57.0 51 54.9
CSS0021270 Camellia sinensis var. sinensis HOM05D003013 ORTHO05D003460 9.7e-07 56.6 50 58.0
CAN.G404.69 Capsicum annuum HOM05D003013 ORTHO05D003460 9.7e-07 56.6 62 51.6
Rhsim02G0041900 Rhododendron simsii HOM05D003013 ORTHO05D003460 9.7e-07 56.6 49 57.1
CSS0007485 Camellia sinensis var. sinensis HOM05D003013 ORTHO05D003460 1.3e-06 56.2 49 59.2
CiPaw.09G094900 Carya illinoinensis HOM05D003013 ORTHO05D003460 1.3e-06 56.2 62 48.4
Ca_00675_v3 Cicer arietinum L. HOM05D003013 ORTHO05D003460 1.7e-06 55.8 51 52.9
DCAR_028191 Daucus carota HOM05D003013 ORTHO05D003460 1.7e-06 55.8 72 45.8
Manes.17G025700 Manihot esculenta HOM05D003013 ORTHO05D003460 1.7e-06 55.8 62 53.2
THA.LOC104813372 Tarenaya hassleriana HOM05D003013 ORTHO05D003460 1.7e-06 55.8 62 50.0
Atru.chr10.2256 Acer truncatum HOM05D003013 ORTHO05D003460 2.2e-06 55.5 63 50.8
HanXRQChr01g0004141 Helianthus annuus HOM05D003013 ORTHO05D003460 2.2e-06 55.5 63 49.2
Medtr2g023850 Medicago truncatula HOM05D003013 ORTHO05D003460 2.2e-06 55.5 51 52.9
Os02g0226000 Oryza sativa ssp. japonica HOM05D003013 ORTHO05D003460 2.2e-06 55.5 63 47.6
QL05p072617 Quercus lobata HOM05D003013 ORTHO05D003460 2.2e-06 55.5 62 45.2
TWI38G0567 Tripterygium wilfordii HOM05D003013 ORTHO05D003460 2.2e-06 55.5 73 45.2
CANSAT56G0660 Cannabis sativa HOM05D003013 ORTHO05D003460 2.8e-06 55.1 41 65.9
Cpa.g.sc152.31 Carica papaya HOM05D003013 ORTHO05D003460 2.8e-06 55.1 67 46.3
AUR62012730 Chenopodium quinoa HOM05D003013 ORTHO05D003460 2.8e-06 55.1 41 63.4
AUR62021924 Chenopodium quinoa HOM05D003013 ORTHO05D003460 2.8e-06 55.1 41 63.4
Ciclev10016857m.g Citrus clementina HOM05D003013 ORTHO05D003460 2.8e-06 55.1 62 51.6
DCAR_024928 Daucus carota HOM05D003013 ORTHO05D003460 2.8e-06 55.1 50 56.0
Thhalv10028993m.g Eutrema salsugineum HOM05D003013 ORTHO05D003460 2.8e-06 55.1 41 61.0
Nitab4.5_0000900g0040 Nicotiana tabacum HOM05D003013 ORTHO05D003460 2.8e-06 55.1 62 50.0
GSVIVG01012695001 Vitis vinifera HOM05D003013 ORTHO05D003460 2.8e-06 55.1 42 66.7
Hma1.2p1_0298F.1_g117700 Hydrangea macrophylla HOM05D003013 ORTHO05D003460 3.7e-06 54.7 62 51.6
Psat1g179240 Pisum sativum HOM05D003013 ORTHO05D003460 3.7e-06 54.7 54 50.0
Rhsim02G0105800 Rhododendron simsii HOM05D003013 ORTHO05D003460 3.7e-06 54.7 41 68.3
Actinidia11359 Actinidia chinensis HOM05D003013 ORTHO05D003460 4.8e-06 54.3 49 57.1
HanXRQChr17g0552611 Helianthus annuus HOM05D003013 ORTHO05D003460 4.8e-06 54.3 62 50.0
Potri.004G008700 Populus trichocarpa HOM05D003013 ORTHO05D003460 4.8e-06 54.3 42 64.3
Hund23450 Selenicereus undatus HOM05D003013 ORTHO05D003460 4.8e-06 54.3 62 46.8
Aa31LG9G9810 Aethionema arabicum HOM05D003013 ORTHO05D003460 6.3e-06 53.9 50 50.0
Cc09_g01480 Coffea canephora HOM05D003013 ORTHO05D003460 6.3e-06 53.9 50 56.0
MD05G1349300 Malus domestica HOM05D003013 ORTHO05D003460 6.3e-06 53.9 41 63.4
PGR004G1699 Punica granatum HOM05D003013 ORTHO05D003460 6.3e-06 53.9 42 64.3
QL05p000280 Quercus lobata HOM05D003013 ORTHO05D003460 6.3e-06 53.9 43 60.5
QL05p072583 Quercus lobata HOM05D003013 ORTHO05D003460 6.3e-06 53.9 43 60.5
TWI38G1501 Tripterygium wilfordii HOM05D003013 ORTHO05D003460 6.3e-06 53.9 73 42.5
EL10Ac8g20086 Beta vulgaris HOM05D003013 ORTHO05D003460 8.2e-06 53.5 62 45.2
Migut.H01577 Erythranthe guttata HOM05D003013 ORTHO05D003460 8.2e-06 53.5 43 62.8
Nitab4.5_0002695g0110 Nicotiana tabacum HOM05D003013 ORTHO05D003460 8.2e-06 53.5 63 47.6
Nitab4.5_0007963g0070 Nicotiana tabacum HOM05D003013 ORTHO05D003460 8.2e-06 53.5 63 47.6
Oeu040338.1 Olea europaea HOM05D003013 ORTHO05D003460 8.2e-06 53.5 50 56.0
Solyc02g080820.3 Solanum lycopersicum HOM05D003013 ORTHO05D003460 8.2e-06 53.5 63 47.6
Sopen02g025510 Solanum pennellii HOM05D003013 ORTHO05D003460 8.2e-06 53.5 63 47.6
PGSC0003DMG400016472 Solanum tuberosum HOM05D003013 ORTHO05D003460 8.2e-06 53.5 63 47.6
PGSC0003DMG401005074 Solanum tuberosum HOM05D003013 ORTHO05D003460 8.2e-06 53.5 62 48.4
SGA_v2.0_scaffold7G03811 Striga asiatica HOM05D003013 ORTHO05D003460 8.2e-06 53.5 42 64.3


User provided reference genes

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