Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 4.4e-158 561.2 279 100.0
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 9.2e-148 526.9 274 94.9
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 2.8e-144 515.4 274 92.3
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 4.4e-142 508.1 274 91.6
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 1.3e-141 506.5 273 90.1
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 1.1e-140 503.4 274 88.0
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 7.0e-140 500.7 274 86.5
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 2.7e-139 498.8 274 88.3
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 6.2e-136 487.6 274 88.3
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 1.4e-135 486.5 274 86.1
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 6.8e-135 484.2 274 85.0
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 2.0e-134 482.6 274 85.0
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 7.5e-134 480.7 274 83.9
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 1.7e-133 479.6 274 86.9
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 1.3e-130 469.9 273 82.8
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 2.3e-130 469.2 276 82.6
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 2.3e-130 469.2 274 83.2
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 3.9e-130 468.4 273 82.8
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 6.6e-130 467.6 273 83.2
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 8.6e-130 467.2 279 81.7
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 1.9e-129 466.1 270 82.2
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 3.3e-129 465.3 271 81.9
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 3.3e-129 465.3 271 83.0
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 5.6e-129 464.5 273 83.2
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 5.6e-129 464.5 274 82.5
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 7.3e-129 464.2 273 83.2
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 1.6e-128 463.0 304 75.3
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 2.1e-128 462.6 274 82.5
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 2.8e-128 462.2 279 80.3
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 3.6e-128 461.8 271 82.3
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 4.7e-128 461.5 271 81.5
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 8.1e-128 460.7 273 82.1
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 4.0e-127 458.4 270 82.6
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 5.2e-127 458.0 271 81.2
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 5.2e-127 458.0 270 81.1
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 6.8e-127 457.6 270 82.2
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 8.9e-127 457.2 270 81.5
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 8.9e-127 457.2 271 81.9
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 8.9e-127 457.2 270 81.9
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 8.9e-127 457.2 273 80.6
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 8.9e-127 457.2 270 81.9
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 8.9e-127 457.2 270 81.9
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 1.2e-126 456.8 271 80.1
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.2e-126 456.8 271 81.9
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 1.2e-126 456.8 270 81.5
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 1.5e-126 456.4 270 81.1
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 1.5e-126 456.4 279 79.2
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 2.0e-126 456.1 278 80.6
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 2.6e-126 455.7 271 81.5
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 3.4e-126 455.3 271 81.5
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 3.4e-126 455.3 269 81.0
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 3.4e-126 455.3 275 78.9
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 7.6e-126 454.1 277 79.4
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 9.9e-126 453.8 275 80.7
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 9.9e-126 453.8 271 79.3
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 9.9e-126 453.8 272 81.2
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 1.3e-125 453.4 278 79.5
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 1.3e-125 453.4 278 78.4
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 2.2e-125 452.6 271 80.4
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 2.9e-125 452.2 272 80.9
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 4.9e-125 451.4 271 79.3
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 1.4e-124 449.9 275 79.3
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.4e-124 449.9 270 81.5
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.4e-124 449.9 270 81.5
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 2.4e-124 449.1 276 78.3
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 3.2e-124 448.7 276 78.6
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 4.1e-124 448.4 276 78.3
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 4.1e-124 448.4 276 78.3
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 7.1e-124 447.6 275 78.9
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 7.1e-124 447.6 272 79.8
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 9.2e-124 447.2 271 79.7
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 1.0e-122 443.7 271 78.6
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 1.3e-122 443.4 272 78.3
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 1.7e-122 443.0 276 77.2
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 1.7e-122 443.0 271 79.3
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 2.3e-122 442.6 272 77.9
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 6.6e-122 441.0 271 78.6
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 1.5e-121 439.9 271 78.2
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 1.5e-121 439.9 262 81.7
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 7.3e-121 437.6 270 77.8
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 2.1e-120 436.0 273 76.9
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 1.1e-119 433.7 270 76.3
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.1e-119 433.7 273 74.4
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 1.4e-119 433.3 257 81.7
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 6.9e-119 431.0 274 74.1
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 2.0e-118 429.5 302 70.5
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 5.8e-118 427.9 304 69.7
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 1.3e-117 426.8 270 77.4
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 6.4e-117 424.5 270 74.4
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 1.1e-116 423.7 270 74.4
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 1.9e-116 422.9 271 77.9
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 7.8e-115 417.5 261 75.9
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 1.0e-114 417.2 271 75.6
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 1.0e-114 417.2 274 76.3
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 1.5e-113 413.3 271 71.6
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.2e-110 403.7 271 69.0
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 4.5e-110 401.7 270 73.3
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 2.2e-109 399.4 241 77.2
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 4.9e-109 398.3 385 55.6
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 1.9e-108 396.4 271 68.3
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 2.4e-108 396.0 271 68.3
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 4.2e-108 395.2 283 70.7
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 5.1e-106 388.3 246 74.4
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 1.6e-104 383.3 243 75.7
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 1.6e-104 383.3 271 67.2
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 2.6e-102 375.9 221 81.9
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 7.1e-100 367.9 220 80.9
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 9.3e-100 367.5 271 65.7
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 1.0e-98 364.0 271 68.6
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.9e-98 362.1 251 73.7
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 1.8e-95 353.2 271 64.6
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 6.5e-93 344.7 197 83.8
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 3.0e-90 335.9 221 74.2
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 1.8e-87 326.6 275 55.6
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 2.2e-85 319.7 288 56.9
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 2.9e-85 319.3 276 59.1
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 4.2e-84 315.5 271 61.3
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 1.6e-83 313.5 271 60.9
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 8.2e-80 301.2 186 78.5
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 3.4e-78 295.8 277 56.7
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 2.1e-75 286.6 283 51.2
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 2.3e-74 283.1 168 81.5
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 2.6e-73 279.6 240 62.1
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 2.8e-72 276.2 276 53.6
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 2.9e-69 266.2 165 80.6
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 1.9e-68 263.5 152 83.6
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 1.8e-66 256.9 160 75.6
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 4.7e-59 232.3 206 61.2
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 1.4e-50 204.1 277 45.1
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 6.8e-50 201.8 158 63.3
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 2.0e-49 200.3 274 45.3
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 6.5e-45 185.3 270 44.4
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 4.2e-44 182.6 171 57.3
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 2.0e-41 173.7 159 62.3
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 3.0e-34 149.8 92 77.2
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 1.2e-30 137.9 185 45.9
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 1.2e-30 137.9 259 39.0
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 5.9e-30 135.6 267 37.8
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 2.5e-28 130.2 79 74.7
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 5.6e-28 129.0 92 68.5
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 7.5e-25 118.6 96 62.5
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 2.9e-24 116.7 134 46.3
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 2.4e-23 113.6 134 45.5
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.1e-19 100.5 73 68.5
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 4.6e-14 82.8 56 69.6
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 5.1e-13 79.3 86 50.0
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 2.1e-11 73.9 45 75.6
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 2.4e-10 70.5 49 69.4
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 2.7e-06 57.0 42 73.8


User provided reference genes

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