Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 3.6e-100 368.2 186 100.0
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 2.0e-58 229.6 196 67.3
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 2.2e-57 226.1 197 65.5
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 2.9e-57 225.7 197 65.0
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 6.5e-57 224.6 210 62.4
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 3.2e-56 222.2 204 62.3
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 9.4e-56 220.7 197 64.0
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 1.2e-55 220.3 210 61.4
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 1.2e-55 220.3 199 63.8
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 2.3e-54 216.1 204 60.8
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 3.9e-54 215.3 196 63.8
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 1.1e-53 213.8 204 59.8
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 2.2e-49 199.5 197 57.9
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 1.4e-48 196.8 197 56.3
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 1.4e-48 196.8 197 56.3
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 5.5e-48 194.9 203 53.7
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 5.5e-48 194.9 197 55.3
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 7.2e-48 194.5 193 57.5
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 9.4e-48 194.1 171 61.4
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 9.4e-48 194.1 197 56.3
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 1.2e-47 193.7 194 55.7
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 4.7e-47 191.8 192 54.7
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 1.4e-46 190.3 197 55.3
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 1.4e-46 190.3 196 54.1
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 1.4e-46 190.3 211 53.1
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 1.4e-46 190.3 203 54.7
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 2.3e-46 189.5 196 55.6
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 2.3e-46 189.5 171 60.2
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 2.3e-46 189.5 196 55.6
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 3.0e-46 189.1 193 54.9
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 3.0e-46 189.1 196 55.6
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 5.2e-46 188.3 203 52.2
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 1.1e-45 187.2 203 53.7
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 1.1e-45 187.2 203 53.7
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 1.1e-45 187.2 210 51.9
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 2.0e-45 186.4 196 55.1
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 4.4e-45 185.3 197 55.8
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 4.4e-45 185.3 194 55.2
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 5.7e-45 184.9 204 53.9
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 5.7e-45 184.9 204 53.9
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 9.7e-45 184.1 200 55.0
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 9.7e-45 184.1 193 55.4
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 1.3e-44 183.7 202 52.5
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 1.3e-44 183.7 196 53.6
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 1.3e-44 183.7 195 54.4
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 2.2e-44 183.0 204 53.9
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 4.8e-44 181.8 195 53.8
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 8.2e-44 181.0 196 53.1
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 1.1e-43 180.6 203 51.7
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 2.4e-43 179.5 197 50.8
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 4.1e-43 178.7 228 47.8
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 5.3e-43 178.3 197 51.8
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 5.3e-43 178.3 196 52.6
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 7.0e-43 177.9 196 51.5
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 7.0e-43 177.9 193 50.8
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 1.6e-42 176.8 197 51.8
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 7.7e-42 174.5 193 52.8
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 1.0e-41 174.1 200 51.5
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 3.8e-41 172.2 200 50.5
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 3.8e-41 172.2 193 53.4
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 3.8e-41 172.2 199 52.3
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 3.8e-41 172.2 226 47.3
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 3.8e-41 172.2 201 50.2
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 6.5e-41 171.4 195 51.3
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 8.5e-41 171.0 200 53.5
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 8.5e-41 171.0 191 52.4
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 1.1e-40 170.6 199 51.8
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 1.1e-40 170.6 226 46.9
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 2.5e-40 169.5 203 50.2
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 2.5e-40 169.5 196 49.5
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 5.5e-40 168.3 195 49.2
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 5.5e-40 168.3 199 51.3
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 5.5e-40 168.3 203 50.2
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 5.5e-40 168.3 203 49.3
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 1.2e-39 167.2 199 50.8
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 1.6e-39 166.8 199 50.8
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 1.6e-39 166.8 199 50.8
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 2.1e-39 166.4 199 50.8
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 2.1e-39 166.4 199 48.7
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 2.7e-39 166.0 194 51.0
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 3.6e-39 165.6 204 48.5
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 3.0e-38 162.5 199 50.3
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 4.0e-38 162.2 196 48.5
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 4.0e-38 162.2 194 48.5
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 5.2e-38 161.8 194 47.9
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 5.2e-38 161.8 202 45.5
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 6.7e-38 161.4 217 45.2
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 8.8e-38 161.0 194 49.0
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 1.2e-37 160.6 205 49.8
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 2.0e-37 159.8 198 49.5
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 1.3e-36 157.1 193 49.2
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 7.0e-35 151.4 182 48.4
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 7.0e-35 151.4 117 64.1
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 2.2e-33 146.4 197 44.7
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 4.2e-32 142.1 200 46.0
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 3.6e-31 139.0 195 42.6
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 2.6e-29 132.9 93 73.1
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 1.7e-25 120.2 202 37.6
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.5e-24 117.1 124 57.3
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 2.5e-24 116.3 193 38.9
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 4.2e-24 115.5 194 36.1
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 8.0e-23 111.3 190 38.9
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 1.0e-22 110.9 91 61.5
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 6.8e-22 108.2 194 37.6
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 1.4e-19 100.5 191 33.5
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 3.1e-19 99.4 129 42.6
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 7.8e-18 94.7 158 41.1
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 1.3e-17 94.0 58 75.9
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 1.6e-15 87.0 66 65.2
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 6.1e-15 85.1 66 65.2
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 3.1e-14 82.8 58 72.4
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 6.8e-14 81.6 57 66.7
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 7.5e-13 78.2 199 34.7
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 1.3e-12 77.4 56 67.9
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 6.4e-12 75.1 100 47.0
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 1.9e-11 73.6 55 72.7
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 2.4e-11 73.2 57 63.2
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 2.3e-09 66.6 74 43.2
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 1.9e-08 63.5 54 53.7
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 9.5e-08 61.2 54 51.9
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-06 57.8 150 31.3


User provided reference genes

Program Settings