Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G007500 Glycine max HOM05D007409 ORTHO05D009264 1.3e-49 201.1 304 100.0
Glyma.07G160400 Glycine max HOM05D007409 ORTHO05D009264 3.3e-26 123.2 58 96.6
Phvul.003G009700 Phaseolus vulgaris HOM05D007409 ORTHO05D009264 2.5e-21 107.1 58 81.0
Lj3g0009247 Lotus japonicus HOM05D007409 ORTHO05D009264 6.1e-20 102.4 56 80.4
VMungo1215G2624 Vigna mungo HOM05D007409 ORTHO05D009264 6.1e-20 102.4 58 77.6
Psat6g097560 Pisum sativum HOM05D007409 ORTHO05D009264 3.3e-18 96.7 58 74.1
TPR.G18613 Trifolium pratense HOM05D007409 ORTHO05D009264 1.3e-17 94.7 58 72.4
arahy.Tifrunner.gnm1.ann1.SGC6ES Arachis hypogaea HOM05D003579 ORTHO05D004266 6.3e-17 92.4 59 69.5
RcHm_v2.0_Chr4g0425991 Rosa chinensis HOM05D007409 ORTHO05D009264 2.4e-16 90.5 54 70.4
Atru.chr4.3064 Acer truncatum HOM05D007409 ORTHO05D009264 5.3e-16 89.4 56 67.9
Medtr1g035250 Medicago truncatula HOM05D007409 ORTHO05D009264 7.0e-16 89.0 58 67.2
Manes.11G109300 Manihot esculenta HOM05D007409 ORTHO05D009264 4.5e-15 86.3 57 64.9
COL.COLO4_34570 Corchorus olitorius HOM05D007409 ORTHO05D009264 1.3e-14 84.7 56 62.5
Ciclev10004501m.g Citrus clementina HOM05D007409 ORTHO05D009264 2.2e-14 84.0 56 66.1
arahy.Tifrunner.gnm1.ann1.U86FK3 Arachis hypogaea HOM05D003579 ORTHO05D009264 2.9e-14 83.6 53 71.7
FvH4_4g20630 Fragaria vesca HOM05D007409 ORTHO05D009264 3.8e-14 83.2 54 61.1
MD13G1149200 Malus domestica HOM05D007409 ORTHO05D009264 6.5e-14 82.4 58 56.9
TWI09G0724 Tripterygium wilfordii HOM05D007409 ORTHO05D009264 8.5e-14 82.0 57 57.9
Thecc.04G305700 Theobroma cacao HOM05D007409 ORTHO05D009264 1.1e-13 81.6 56 60.7
Haze_01348 Corylus avellana HOM05D007409 ORTHO05D009264 1.9e-13 80.9 58 60.3
Duzib052G0390 Durio zibethinus HOM05D007409 ORTHO05D009264 4.2e-13 79.7 53 64.2
QL06p012977 Quercus lobata HOM05D007409 ORTHO05D009264 4.2e-13 79.7 57 59.6
ClCG06G004440 Citrullus lanatus HOM05D007409 ORTHO05D009264 7.2e-13 79.0 58 58.6
CsaV3_6G028460 Cucumis sativus L. HOM05D007409 ORTHO05D009264 7.2e-13 79.0 58 56.9
CsaV3_UNG230130 Cucumis sativus L. HOM05D007409 ORTHO05D009264 7.2e-13 79.0 58 56.9
CANSAT78G0164 Cannabis sativa HOM05D007409 ORTHO05D009264 9.4e-13 78.6 56 57.1
Prupe.1G113200 Prunus persica HOM05D007409 ORTHO05D009264 1.2e-12 78.2 56 62.5
Cfa015278 Carpinus fangiana HOM05D007409 ORTHO05D009264 2.1e-12 77.4 48 68.8
Gohir.D01G023574 Gossypium hirsutum HOM05D007409 ORTHO05D009264 2.7e-12 77.0 54 55.6
Gorai.002G031400 Gossypium raimondii HOM05D007409 ORTHO05D009264 2.7e-12 77.0 54 55.6
SHI00109 Sapria himalayana HOM05D007409 ORTHO05D009264 4.7e-12 76.3 60 53.3
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 6.1e-12 75.9 55 56.4
MELO3C021257.2 Cucumis melo HOM05D007409 ORTHO05D009264 6.1e-12 75.9 58 53.4
Gohir.A01G035500 Gossypium hirsutum HOM05D007409 ORTHO05D009264 1.8e-11 74.3 54 53.7
RcHm_v2.0_Chr4g0426031 Rosa chinensis HOM05D007409 ORTHO05D031595 1.8e-11 74.3 47 63.8
Sed0014802 Sechium edule HOM05D007409 ORTHO05D009264 2.3e-11 73.9 58 55.2
PGR031G2326 Punica granatum HOM05D007409 ORTHO05D009264 3.3e-10 70.1 49 63.3
Eucgr.B03979 Eucalyptus grandis HOM05D007409 ORTHO05D009264 3.7e-09 66.6 58 50.0
CARHR157620 Cardamine hirsuta HOM05D007409 ORTHO05D009264 3.1e-08 63.5 53 45.3
BcaB05g22985 Brassica carinata HOM05D007409 ORTHO05D009264 5.3e-08 62.8 53 43.4
FAN12G2839 Fragaria x ananassa HOM05D007409 ORTHO05D009264 5.3e-08 62.8 38 63.2
Actinidia31566 Actinidia chinensis HOM05D050407 ORTHO05D038123 7.0e-08 62.4 43 58.1
Carub.0005s1497 Capsella rubella HOM05D007409 ORTHO05D009264 7.0e-08 62.4 48 50.0
Thhalv10010184m.g Eutrema salsugineum HOM05D007409 ORTHO05D009264 9.1e-08 62.0 53 43.4
FAN07G1068 Fragaria x ananassa HOM05D007409 ORTHO05D009264 1.6e-07 61.2 38 63.2
A01p25200 Brassica napus HOM05D007409 ORTHO05D009264 4.5e-07 59.7 53 39.6
BraA01t02429Z Brassica rapa HOM05D007409 ORTHO05D009264 4.5e-07 59.7 53 39.6
BcaC09g49905 Brassica carinata HOM05D007409 ORTHO05D009264 5.9e-07 59.3 53 39.6
C01p31450 Brassica napus HOM05D007409 ORTHO05D009264 5.9e-07 59.3 53 39.6
BolC1t03079H Brassica oleracea HOM05D007409 ORTHO05D009264 5.9e-07 59.3 53 39.6
Lj6P694T20 Lonicera japonica HOM05D007409 ORTHO05D009264 5.9e-07 59.3 45 57.8
AT3G48810 Arabidopsis thaliana HOM05D007409 ORTHO05D009264 2.2e-06 57.4 48 41.7
Aa31LG11G8360 Aethionema arabicum HOM05D007409 ORTHO05D009264 3.8e-06 56.6 51 39.2
Sp5g13220 Schrenkiella parvula HOM05D007409 ORTHO05D009264 3.8e-06 56.6 48 41.7


User provided reference genes

Program Settings