Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G259100 Glycine max HOM05D008433 ORTHO05D009918 8.7e-70 266.9 142 100.0
VMungo1309G0842 Vigna mungo HOM05D008433 ORTHO05D009918 5.7e-45 184.5 143 71.3
Phvul.009G257200 Phaseolus vulgaris HOM05D008433 ORTHO05D009918 5.9e-42 174.5 144 63.9
TPR.G22611 Trifolium pratense HOM05D008433 ORTHO05D009918 8.8e-22 107.5 132 50.8
Psat3g000840 Pisum sativum HOM05D008433 ORTHO05D009918 5.0e-17 91.7 145 51.0
Lj1g0005818 Lotus japonicus HOM05D008433 ORTHO05D009918 5.5e-16 88.2 148 43.9
AT2G46735 Arabidopsis thaliana HOM05D008433 ORTHO05D009918 2.3e-14 82.8 102 46.1
AL4G46200 Arabidopsis lyrata HOM05D008433 ORTHO05D009918 6.8e-14 81.3 101 46.5
Thhalv10001667m.g Eutrema salsugineum HOM05D008433 ORTHO05D009918 2.0e-13 79.7 109 43.1
Manes.05G017500 Manihot esculenta HOM05D008433 ORTHO05D009918 2.6e-13 79.3 153 36.6
Thecc.01G334700 Theobroma cacao HOM05D008433 ORTHO05D009918 1.3e-12 77.0 89 49.4
arahy.Tifrunner.gnm1.ann1.TN0QSJ Arachis hypogaea HOM05D032367 ORTHO05D009918 1.7e-12 76.6 141 51.1
CARHR142080 Cardamine hirsuta HOM05D008433 ORTHO05D009918 1.7e-12 76.6 101 45.5
CiPaw.01G081400 Carya illinoinensis HOM05D008433 ORTHO05D009918 2.8e-12 75.9 107 47.7
BolC4t21776H Brassica oleracea HOM05D000145 ORTHO05D013968 4.9e-12 75.1 108 42.6
Duzib138G0947 Durio zibethinus HOM05D008433 ORTHO05D009918 4.9e-12 75.1 133 39.8
BcaNung03892 Brassica carinata HOM05D008433 ORTHO05D009918 6.3e-12 74.7 100 42.0
CANSAT56G2967 Cannabis sativa HOM05D013717 ORTHO05D009918 8.3e-12 74.3 169 39.1
Carub.0004s2944 Capsella rubella HOM05D008433 ORTHO05D009918 8.3e-12 74.3 106 48.1
A05p01070 Brassica napus HOM05D000145 ORTHO05D013968 1.4e-11 73.6 102 42.2
C04p01210 Brassica napus HOM05D000145 ORTHO05D013968 1.4e-11 73.6 102 51.0
BraA05t19107Z Brassica rapa HOM05D000145 ORTHO05D013968 1.4e-11 73.6 102 42.2
Cfa004661 Carpinus fangiana HOM05D008433 ORTHO05D009918 2.4e-11 72.8 119 39.5
BcaC02g12646 Brassica carinata HOM05D008433 ORTHO05D009918 9.2e-11 70.9 102 50.0
Lalb_Chr18g0044671 Lupinus albus HOM05D008433 ORTHO05D009918 9.2e-11 70.9 148 41.2
TWI14G1180 Tripterygium wilfordii HOM05D008433 ORTHO05D009918 9.2e-11 70.9 145 34.5
arahy.Tifrunner.gnm1.ann1.2VFH9L Arachis hypogaea HOM05D032367 ORTHO05D009918 1.6e-10 70.1 141 48.2
Gohir.D11G104900 Gossypium hirsutum HOM05D008433 ORTHO05D009918 4.5e-10 68.6 78 50.0
Gorai.007G112200 Gossypium raimondii HOM05D008433 ORTHO05D009918 4.5e-10 68.6 78 50.0
Cpa.g.sc141.14 Carica papaya HOM05D008433 ORTHO05D009918 5.9e-10 68.2 84 42.9
Ca_09539_v3 Cicer arietinum L. HOM05D032367 ORTHO05D009918 5.9e-10 68.2 48 68.8
Glyma.03G260400 Glycine max HOM05D008433 ORTHO05D009918 5.9e-10 68.2 74 58.1
BcaB06g29468 Brassica carinata HOM05D008433 ORTHO05D009918 1.0e-09 67.4 97 45.4
BcaC02g07009 Brassica carinata HOM05D008433 ORTHO05D009918 1.0e-09 67.4 97 45.4
Gohir.A11G100200 Gossypium hirsutum HOM05D008433 ORTHO05D009918 1.0e-09 67.4 76 48.7
CANSAT56G3323 Cannabis sativa HOM05D013717 ORTHO05D009918 1.3e-09 67.0 170 32.9
Potri.002G178100 Populus trichocarpa HOM05D008433 ORTHO05D009918 1.7e-09 66.6 97 46.4
Sabra02G0135500 Salix brachista HOM05D008433 ORTHO05D009918 3.8e-09 65.5 105 44.8
Aa31LG1G28120 Aethionema arabicum HOM05D008433 ORTHO05D009918 6.6e-09 64.7 81 44.4
Actinidia28092 Actinidia chinensis HOM05D013717 ORTHO05D009918 2.5e-08 62.8 132 37.9
Medtr7g118130 Medicago truncatula HOM05D008433 ORTHO05D009918 2.5e-08 62.8 119 47.1
Sed0019953 Sechium edule HOM05D029570 ORTHO05D009918 3.3e-08 62.4 101 37.6
A04p34600 Brassica napus HOM05D008433 ORTHO05D009918 4.3e-08 62.0 105 37.1
BraA04t18918Z Brassica rapa HOM05D008433 ORTHO05D009918 4.3e-08 62.0 105 37.1
CsaV3_6G008920 Cucumis sativus L. HOM05D029570 ORTHO05D009918 4.3e-08 62.0 141 29.8
MSTRG.20921 Avicennia marina HOM05D008433 ORTHO05D009918 1.2e-07 60.5 161 28.0
Oeu046652.1 Olea europaea HOM05D008433 ORTHO05D009918 1.2e-07 60.5 79 39.2
BcaC02g07007 Brassica carinata HOM05D008433 ORTHO05D009918 2.1e-07 59.7 105 37.1
C04p72390 Brassica napus HOM05D008433 ORTHO05D009918 2.1e-07 59.7 105 37.1
BolC4t28725H Brassica oleracea HOM05D008433 ORTHO05D009918 2.1e-07 59.7 105 37.1
COL.COLO4_06213 Corchorus olitorius HOM05D008433 ORTHO05D009918 2.8e-07 59.3 93 46.2
FAN01G0488 Fragaria x ananassa HOM05D013717 ORTHO05D009918 2.8e-07 59.3 131 32.8
Hma1.2p1_1697F.1_g298100 Hydrangea macrophylla HOM05D008433 ORTHO05D009918 2.8e-07 59.3 108 44.4
Oeu015062.1 Olea europaea HOM05D008433 ORTHO05D009918 2.8e-07 59.3 86 39.5
Rhsim01G0179000 Rhododendron simsii HOM05D008433 ORTHO05D009918 2.8e-07 59.3 111 40.5
FAN06G2608 Fragaria x ananassa HOM05D013717 ORTHO05D009918 3.6e-07 58.9 128 32.8
TAR629G1417 Trochodendron aralioides HOM05D008433 ORTHO05D009918 4.7e-07 58.5 80 48.8
Prupe.2G196100 Prunus persica HOM05D013717 ORTHO05D009918 6.1e-07 58.2 133 33.8
AUR62004552 Chenopodium quinoa HOM05D008433 ORTHO05D009918 8.0e-07 57.8 132 29.5
Ciclev10023317m.g Citrus clementina HOM05D008433 ORTHO05D009918 8.0e-07 57.8 130 40.0
PGR031G3198 Punica granatum HOM05D008433 ORTHO05D009918 1.0e-06 57.4 92 40.2
AUR62022666 Chenopodium quinoa HOM05D008433 ORTHO05D009918 1.4e-06 57.0 105 33.3
FAN03G0231 Fragaria x ananassa HOM05D013717 ORTHO05D009918 1.4e-06 57.0 129 31.8
Nn1g00412 Nelumbo nucifera HOM05D033573 ORTHO05D009918 1.8e-06 56.6 82 41.5
Nitab4.5_0002053g0010 Nicotiana tabacum HOM05D018587 ORTHO05D009918 3.0e-06 55.8 112 33.0
RcHm_v2.0_Chr1g0360901 Rosa chinensis HOM05D013717 ORTHO05D009918 4.0e-06 55.5 78 44.9
ClCG06G002750 Citrullus lanatus HOM05D029570 ORTHO05D009918 5.2e-06 55.1 92 35.9
FAN10G3359 Fragaria x ananassa HOM05D013717 ORTHO05D009918 5.2e-06 55.1 77 40.3
CSS0049417 Camellia sinensis var. sinensis HOM05D008433 ORTHO05D009918 6.8e-06 54.7 120 39.2
PGSC0003DMG400010820 Solanum tuberosum HOM05D018587 ORTHO05D009918 6.8e-06 54.7 85 38.8
FAN10G3789 Fragaria x ananassa HOM05D013717 ORTHO05D009918 8.9e-06 54.3 129 31.8


User provided reference genes

Program Settings