Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 3.0e-168 595.1 303 100.0
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 1.9e-162 575.9 303 96.0
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 3.5e-161 571.6 303 95.0
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 6.0e-161 570.9 303 95.4
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 1.8e-152 542.7 303 90.1
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 3.9e-152 541.6 303 91.1
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 1.5e-151 539.7 303 89.1
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 1.9e-151 539.3 303 89.8
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 3.3e-151 538.5 303 89.8
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 1.3e-150 536.6 303 88.4
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 2.1e-150 535.8 303 89.1
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 1.8e-149 532.7 303 89.4
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 4.2e-146 521.5 303 87.1
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 1.5e-143 513.1 300 85.0
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.9e-143 512.7 300 84.7
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 4.3e-143 511.5 300 86.0
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 5.7e-143 511.1 300 84.7
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 5.7e-143 511.1 303 85.8
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 7.4e-143 510.8 300 84.3
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 4.8e-142 508.1 300 85.0
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 6.3e-142 507.7 303 84.5
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.1e-141 506.9 303 83.5
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 1.4e-141 506.5 303 83.8
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 1.4e-141 506.5 303 85.8
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 1.8e-141 506.1 300 83.7
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 1.5e-140 503.1 302 82.8
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 1.5e-140 503.1 300 83.7
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.6e-140 502.3 300 83.7
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 4.5e-140 501.5 303 84.8
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 7.6e-140 500.7 300 83.3
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 7.6e-140 500.7 303 82.8
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 1.7e-139 499.6 316 80.1
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 3.8e-139 498.4 303 82.5
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 3.8e-139 498.4 303 82.8
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 3.8e-139 498.4 303 83.2
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 5.0e-139 498.0 301 82.1
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 8.5e-139 497.3 300 82.7
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 8.5e-139 497.3 301 82.4
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 4.2e-138 495.0 303 81.8
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 7.2e-138 494.2 303 83.2
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 1.2e-137 493.4 301 81.4
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 3.6e-137 491.9 303 82.2
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 3.6e-137 491.9 303 81.2
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 4.6e-137 491.5 301 80.1
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 6.1e-137 491.1 303 82.2
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 7.9e-137 490.7 303 80.9
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 7.9e-137 490.7 300 80.3
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.0e-136 490.3 298 82.9
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 1.3e-136 490.0 302 79.8
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 3.0e-136 488.8 300 80.3
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 3.9e-136 488.4 302 79.5
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.9e-136 488.4 297 82.8
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 3.9e-136 488.4 300 80.3
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 6.7e-136 487.6 303 80.9
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 1.1e-135 486.9 303 79.9
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 1.9e-135 486.1 300 79.3
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 2.5e-135 485.7 303 80.5
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 4.3e-135 485.0 303 80.9
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 4.3e-135 485.0 301 78.4
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 5.7e-135 484.6 301 81.7
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 9.7e-135 483.8 300 80.0
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 1.3e-134 483.4 301 81.1
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 1.6e-134 483.0 301 81.7
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.6e-134 483.0 298 82.2
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 1.6e-134 483.0 300 80.0
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 8.2e-134 480.7 301 78.1
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 1.8e-133 479.6 301 78.7
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 9.1e-133 477.2 302 78.8
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 1.5e-132 476.5 300 78.3
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.5e-132 476.5 303 79.9
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 1.0e-131 473.8 303 76.9
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 3.8e-131 471.9 300 79.0
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 5.0e-131 471.5 303 78.2
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 1.1e-130 470.3 303 75.6
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 1.4e-130 469.9 305 78.0
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 2.5e-130 469.2 303 77.6
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 3.2e-130 468.8 298 77.2
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 3.2e-130 468.8 303 76.6
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 3.2e-130 468.8 300 78.0
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 9.4e-130 467.2 300 78.0
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.6e-129 466.5 303 77.2
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 1.6e-129 466.5 303 77.9
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 2.1e-129 466.1 300 76.3
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 2.1e-129 466.1 303 77.2
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 4.6e-129 464.9 302 77.8
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 4.6e-129 464.9 302 77.8
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 7.9e-129 464.2 345 70.7
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 1.8e-128 463.0 303 77.2
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 2.3e-128 462.6 303 76.9
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 3.0e-128 462.2 302 77.5
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 5.1e-128 461.5 298 76.5
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 6.7e-128 461.1 303 75.6
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 8.8e-128 460.7 303 76.6
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 1.5e-127 459.9 302 76.8
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 2.6e-127 459.1 294 77.6
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 4.4e-127 458.4 300 76.0
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 5.7e-127 458.0 298 76.2
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 7.4e-127 457.6 303 77.2
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 9.7e-127 457.2 303 74.9
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 2.8e-126 455.7 321 72.6
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 3.7e-126 455.3 300 76.7
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 1.1e-125 453.8 303 75.2
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.4e-125 453.4 303 73.9
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 1.8e-125 453.0 303 75.6
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 5.3e-125 451.4 303 74.6
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 2.0e-124 449.5 301 74.1
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 2.6e-124 449.1 316 72.5
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 5.9e-124 448.0 303 75.2
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 2.2e-123 446.0 300 73.7
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 5.0e-123 444.9 303 72.9
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 3.2e-122 442.2 309 73.5
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 1.2e-121 440.3 303 72.6
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 4.7e-121 438.3 338 67.8
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 1.1e-119 433.7 249 86.3
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 2.6e-119 432.6 241 88.0
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 1.3e-115 420.2 259 79.9
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 1.1e-114 417.2 293 70.0
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 4.2e-114 415.2 298 66.4
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 1.2e-113 413.7 293 69.3
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.4e-112 410.2 301 71.1
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 1.8e-112 409.8 340 62.6
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 1.8e-112 409.8 288 69.4
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 2.6e-111 406.0 300 70.0
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 3.1e-109 399.1 312 68.9
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 1.3e-107 393.7 303 68.3
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 3.7e-102 375.6 300 68.0
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 2.4e-101 372.9 209 88.0
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 2.7e-100 369.4 295 61.7
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 2.3e-99 366.3 305 62.0
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 4.7e-97 358.6 509 43.8
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 1.2e-95 354.0 209 82.8
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 7.5e-95 351.3 290 57.6
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 3.6e-89 332.4 200 83.0
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 1.4e-88 330.5 220 75.9
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 2.9e-78 296.2 246 66.3
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 5.0e-75 285.4 246 57.7
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 1.5e-74 283.9 298 51.3
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 2.5e-74 283.1 245 64.1
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 2.0e-63 246.9 154 81.2
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 1.9e-50 203.8 281 41.3
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 7.3e-50 201.8 298 38.9
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.9e-45 187.2 148 59.5
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 5.4e-45 185.7 108 82.4
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 1.4e-37 161.0 101 77.2
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 3.9e-35 152.9 199 48.7
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.3e-33 147.9 84 83.3
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 2.0e-31 140.6 102 72.5
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 6.5e-22 109.0 234 29.5
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 4.2e-21 106.3 70 74.3
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 2.1e-20 104.0 151 41.1
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 4.6e-20 102.8 87 65.5
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 6.1e-20 102.4 83 63.9
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 2.3e-19 100.5 86 62.8
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 3.9e-19 99.8 161 39.8
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 6.7e-19 99.0 63 73.0
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 2.5e-18 97.1 121 49.6
RcHm_v2.0_Chr7g0229041 Rosa chinensis HOM05D004556 ORTHO05D005298 5.3e-08 62.8 40 72.5
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 5.9e-07 59.3 46 58.7
Sp1g08890 Schrenkiella parvula HOM05D000111 ORTHO05D013786 7.7e-07 58.9 62 56.5
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 3.8e-06 56.6 54 57.4
arahy.Tifrunner.gnm1.ann1.N1YJY2 Arachis hypogaea HOM05D001256 ORTHO05D000106 5.0e-06 56.2 35 80.0


User provided reference genes

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