Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G233500 Glycine max HOM05D006406 ORTHO05D007883 5.7e-200 700.7 341 100.0
Glyma.03G235700 Glycine max HOM05D006406 ORTHO05D007883 1.2e-136 490.3 277 88.1
Phvul.006G089700 Phaseolus vulgaris HOM05D006406 ORTHO05D007883 9.2e-126 454.1 277 83.0
VMungo0540G0116 Vigna mungo HOM05D006406 ORTHO05D007883 4.6e-125 451.8 278 83.1
Ca_05800_v3 Cicer arietinum L. HOM05D006406 ORTHO05D007883 3.2e-110 402.5 285 72.6
TPR.G33225 Trifolium pratense HOM05D006406 ORTHO05D007883 2.1e-106 389.8 286 71.7
Medtr7g112650 Medicago truncatula HOM05D006406 ORTHO05D007883 6.2e-106 388.3 282 70.2
Lj1g0022852 Lotus japonicus HOM05D006406 ORTHO05D007883 3.1e-105 386.0 283 69.6
Lalb_Chr18g0045761 Lupinus albus HOM05D006406 ORTHO05D007883 5.3e-105 385.2 278 73.0
Psat0s27g0120 Pisum sativum HOM05D006406 ORTHO05D007883 3.8e-103 379.0 277 70.0
Haze_04140 Corylus avellana HOM05D006406 ORTHO05D007883 1.9e-102 376.7 283 66.8
Cfa006628 Carpinus fangiana HOM05D006406 ORTHO05D007883 1.6e-101 373.6 283 66.8
arahy.Tifrunner.gnm1.ann1.Q6XDLT Arachis hypogaea HOM05D006406 ORTHO05D007883 6.0e-101 371.7 277 67.9
Duzib177G0190 Durio zibethinus HOM05D006406 ORTHO05D007883 7.9e-101 371.3 277 67.9
arahy.Tifrunner.gnm1.ann1.PP7FUY Arachis hypogaea HOM05D006406 ORTHO05D007883 1.8e-100 370.2 277 67.5
QL03p020986 Quercus lobata HOM05D006406 ORTHO05D007883 5.1e-100 368.6 284 66.5
QL03p021882 Quercus lobata HOM05D006406 ORTHO05D007883 1.6e-98 363.6 284 65.5
CiPaw.08G161900 Carya illinoinensis HOM05D006406 ORTHO05D007883 3.7e-98 362.5 283 66.8
Thecc.05G312900 Theobroma cacao HOM05D006406 ORTHO05D007883 1.4e-97 360.5 275 66.5
MD04G1200800 Malus domestica HOM05D006406 ORTHO05D007883 1.8e-97 360.1 258 68.6
Cpa.g.sc48.95 Carica papaya HOM05D006406 ORTHO05D007883 6.9e-97 358.2 259 67.6
COL.COLO4_10518 Corchorus olitorius HOM05D006406 ORTHO05D007883 2.6e-96 356.3 275 65.5
Prupe.6G320900 Prunus persica HOM05D006406 ORTHO05D007883 4.5e-96 355.5 291 64.3
Dinv30810 Davidia involucrata HOM05D006406 ORTHO05D007883 5.8e-96 355.1 243 70.0
Manes.08G117600 Manihot esculenta HOM05D006406 ORTHO05D007883 7.6e-96 354.8 285 63.9
RcHm_v2.0_Chr3g0455711 Rosa chinensis HOM05D006406 ORTHO05D007883 1.0e-95 354.4 281 65.1
Potri.013G017100 Populus trichocarpa HOM05D006406 ORTHO05D007883 2.2e-95 353.2 292 63.4
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 8.4e-95 351.3 280 65.4
Atru.chr2.29 Acer truncatum HOM05D006406 ORTHO05D007883 1.1e-94 350.9 276 65.2
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.4e-94 350.5 270 66.7
Sabra13G0015900 Salix brachista HOM05D006406 ORTHO05D007883 2.5e-94 349.7 283 63.6
Sabra13G0020100 Salix brachista HOM05D006406 ORTHO05D007883 2.5e-94 349.7 283 63.6
Ciclev10001711m.g Citrus clementina HOM05D006406 ORTHO05D007883 3.2e-94 349.4 292 61.3
Gorai.013G125700 Gossypium raimondii HOM05D006406 ORTHO05D007883 4.2e-94 349.0 275 64.7
Gohir.A13G109200 Gossypium hirsutum HOM05D006406 ORTHO05D007883 1.6e-93 347.1 275 64.4
TAR633G0157 Trochodendron aralioides HOM05D006406 ORTHO05D007883 2.3e-92 343.2 295 61.4
TWI12G0288 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 3.9e-92 342.4 281 63.7
PGR083G2713 Punica granatum HOM05D006406 ORTHO05D007883 6.7e-92 341.7 246 69.1
Oeu043348.1 Olea europaea HOM05D006406 ORTHO05D007883 8.7e-92 341.3 272 64.0
Gohir.D13G112000 Gossypium hirsutum HOM05D006406 ORTHO05D007883 3.3e-91 339.3 271 64.2
CsaV3_1G038840 Cucumis sativus L. HOM05D006406 ORTHO05D007883 7.4e-91 338.2 280 62.5
CAN.G1459.10 Capsicum annuum HOM05D006406 ORTHO05D007883 1.6e-90 337.0 240 67.9
Hma1.2p1_1212F.1_g267260 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 4.8e-90 335.5 280 62.1
Nitab4.5_0003658g0090 Nicotiana tabacum HOM05D006406 ORTHO05D007883 1.4e-89 334.0 252 65.1
ClCG03G017120 Citrullus lanatus HOM05D006406 ORTHO05D007883 1.8e-89 333.6 283 61.5
vmacro04816 Vaccinium macrocarpon HOM05D006406 ORTHO05D007883 1.8e-89 333.6 304 58.9
Nitab4.5_0003844g0020 Nicotiana tabacum HOM05D006406 ORTHO05D007883 2.4e-89 333.2 252 65.1
Hund07096 Selenicereus undatus HOM05D006406 ORTHO05D007883 3.1e-89 332.8 274 62.0
Peaxi162Scf00037g01125 Petunia axillaris HOM05D006406 ORTHO05D007883 4.1e-89 332.4 271 62.0
MBI18_g46420_MAGBIO Magnolia biondii HOM05D006406 ORTHO05D007883 1.2e-88 330.9 258 65.1
Lj9C146T2 Lonicera japonica HOM05D006406 ORTHO05D007883 2.0e-88 330.1 265 62.3
Nn4g25830 Nelumbo nucifera HOM05D006406 ORTHO05D007883 2.0e-88 330.1 302 58.6
Rhsim07G0188300 Rhododendron simsii HOM05D006406 ORTHO05D007883 2.0e-88 330.1 235 67.7
CANSAT54G1062 Cannabis sativa HOM05D006406 ORTHO05D007883 2.6e-88 329.7 281 60.9
Carub.0006s2486 Capsella rubella HOM05D006406 ORTHO05D007883 3.4e-88 329.3 278 60.4
Sed0006495 Sechium edule HOM05D006406 ORTHO05D007883 3.4e-88 329.3 284 60.9
GSVIVG01031144001 Vitis vinifera HOM05D006406 ORTHO05D007883 3.4e-88 329.3 290 59.3
Sopen01g043220 Solanum pennellii HOM05D006406 ORTHO05D007883 1.0e-87 327.8 283 61.5
Eucgr.B01914 Eucalyptus grandis HOM05D006406 ORTHO05D007883 1.7e-87 327.0 300 59.3
Aqoxy5G00730 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 5.0e-87 325.5 253 63.2
THA.LOC104818716 Tarenaya hassleriana HOM05D006406 ORTHO05D007883 5.0e-87 325.5 286 60.5
SalBow7G2778 Salvia bowleyana HOM05D006406 ORTHO05D007883 6.5e-87 325.1 235 66.4
Sc16g0008820 Simmondsia chinensis HOM05D006406 ORTHO05D007883 8.5e-87 324.7 282 59.9
PGSC0003DMG400007542 Solanum tuberosum HOM05D006406 ORTHO05D007883 8.5e-87 324.7 252 65.1
Solyc01g099700.3 Solanum lycopersicum HOM05D006406 ORTHO05D007883 1.1e-86 324.3 288 59.7
HanXRQChr11g0339311 Helianthus annuus HOM05D006406 ORTHO05D007883 2.5e-86 323.2 277 61.0
AT5G27710 Arabidopsis thaliana HOM05D006406 ORTHO05D007883 3.2e-86 322.8 278 59.0
Actinidia35561 Actinidia chinensis HOM05D006406 ORTHO05D007883 4.2e-86 322.4 306 58.5
AUR62000764 Chenopodium quinoa HOM05D006406 ORTHO05D007883 4.2e-86 322.4 262 62.6
Aa31LG11G9460 Aethionema arabicum HOM05D006406 ORTHO05D007883 9.3e-86 321.2 283 57.6
CARHR186230 Cardamine hirsuta HOM05D006406 ORTHO05D007883 6.1e-85 318.5 281 57.3
Sp2g20880 Schrenkiella parvula HOM05D006406 ORTHO05D007883 1.8e-84 317.0 278 59.0
Hund07097 Selenicereus undatus HOM05D006406 ORTHO05D007883 2.3e-84 316.6 234 65.4
TWI36G0652 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 3.0e-84 316.2 288 57.6
AL6G39250 Arabidopsis lyrata HOM05D006406 ORTHO05D007883 3.9e-84 315.8 278 57.2
Thhalv10005730m.g Eutrema salsugineum HOM05D006406 ORTHO05D007883 6.7e-84 315.1 278 58.3
EL10Ac4g09916 Beta vulgaris HOM05D006406 ORTHO05D007883 5.7e-83 312.0 254 63.4
CSS0003718 Camellia sinensis var. sinensis HOM05D006406 ORTHO05D007883 1.8e-81 307.0 286 57.3
SGA_v2.0_scaffold172G38986 Striga asiatica HOM05D006406 ORTHO05D007883 5.3e-81 305.4 286 59.4
Migut.N01744 Erythranthe guttata HOM05D006406 ORTHO05D007883 2.0e-80 303.5 259 61.8
A09p05410 Brassica napus HOM05D006406 ORTHO05D007883 5.9e-80 302.0 277 57.0
Ah.06g189770 Amaranthus hybridus HOM05D006406 ORTHO05D007883 7.7e-80 301.6 237 63.7
BraA09t36179Z Brassica rapa HOM05D006406 ORTHO05D007883 7.7e-80 301.6 277 57.0
FvH4_6g06560 Fragaria vesca HOM05D006406 ORTHO05D007883 1.7e-79 300.4 243 65.0
PSO210G1514 Papaver somniferum HOM05D006406 ORTHO05D007883 1.7e-79 300.4 284 58.1
PSO210G1688 Papaver somniferum HOM05D006406 ORTHO05D007883 8.5e-79 298.1 280 59.3
CDE11G0411 Ceratophyllum demersum HOM05D001335 ORTHO05D001184 9.4e-78 294.7 249 57.4
BcaB04g19684 Brassica carinata HOM05D006406 ORTHO05D007883 2.7e-77 293.1 281 54.8
unitig_52.g17112 Utricularia gibba HOM05D006406 ORTHO05D007883 4.6e-77 292.4 282 58.2
BcaC04g23642 Brassica carinata HOM05D006406 ORTHO05D007883 1.8e-76 290.4 278 55.8
Lsat_1_v5_gn_9_88181 Lactuca sativa HOM05D006406 ORTHO05D007883 1.8e-76 290.4 239 60.3
C09p05890 Brassica napus HOM05D006406 ORTHO05D007883 2.6e-75 286.6 279 55.9
BolC9t53515H Brassica oleracea HOM05D006406 ORTHO05D007883 2.6e-75 286.6 279 55.9
ECA236G2290 Erigeron canadensis HOM05D006406 ORTHO05D007883 4.4e-75 285.8 236 61.0
ATR0796G153 Amborella trichopoda HOM05D006406 ORTHO05D007883 5.0e-71 272.3 225 59.1
Os07g0673000 Oryza sativa ssp. japonica HOM05D006406 ORTHO05D007883 1.6e-69 267.3 234 54.7
Cc02_g34120 Coffea canephora HOM05D006406 ORTHO05D007883 4.7e-69 265.8 160 76.2
MELO3C015308.2 Cucumis melo HOM05D006406 ORTHO05D007883 5.7e-67 258.8 322 48.1
DCAR_029393 Daucus carota HOM05D006406 ORTHO05D007883 6.3e-66 255.4 298 50.0
AUR62005205 Chenopodium quinoa HOM05D006406 ORTHO05D007883 7.0e-65 251.9 271 53.1
Hma1.2p1_1212F.1_g267270 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 8.5e-63 245.0 221 60.2
Oeu043349.1 Olea europaea HOM05D006406 ORTHO05D007883 8.5e-63 245.0 213 61.5
SEGI_05797 Sequoiadendron giganteum HOM05D006406 ORTHO05D007883 1.1e-62 244.6 282 47.5
Zm00001eb111280 Zea mays HOM05D006406 ORTHO05D007883 1.2e-61 241.1 208 55.8
PGSC0003DMG400024710 Solanum tuberosum HOM05D006406 ORTHO05D007883 9.7e-59 231.5 203 62.6
arahy.Tifrunner.gnm1.ann1.AST3BR Arachis hypogaea HOM05D006406 ORTHO05D007883 3.0e-52 209.9 158 65.8
Mapoly0054s0047 Marchantia polymorpha HOM05D006406 ORTHO05D007883 1.7e-47 194.1 232 44.8
Pp3c6_26830 Physcomitrium patens HOM05D006406 ORTHO05D007883 3.8e-47 193.0 161 55.3
SMO172G0153 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 1.5e-46 191.0 240 43.3
SMO172G0232 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 2.3e-44 183.7 235 42.6
CBR_g19246 Chara braunii HOM05D006406 ORTHO05D007883 5.2e-44 182.6 155 53.5
HPP92_011843 Vanilla planifolia HOM05D006406 ORTHO05D007883 3.4e-43 179.9 220 45.9
SMO198G0100 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 2.8e-37 160.2 259 38.2
PSO421G0497 Papaver somniferum HOM05D006406 ORTHO05D007883 8.0e-37 158.7 244 37.3
MSTRG.16393 Avicennia marina HOM05D006406 ORTHO05D007883 1.7e-34 151.0 175 54.3
FAN02G3513 Fragaria x ananassa HOM05D006406 ORTHO05D007883 9.5e-30 135.2 146 56.8
BcaB07g32734 Brassica carinata HOM05D006406 ORTHO05D007883 1.0e-15 88.6 138 42.8
AagrBONN_evm.TU.Sc2ySwM_362.2555 Anthoceros agrestis HOM05D006406 ORTHO05D007883 2.8e-13 80.5 63 55.6
AL3G41450 Arabidopsis lyrata HOM05D000059 ORTHO05D000128 2.0e-11 74.3 41 80.5
Lsat_1_v5_gn_5_186620 Lactuca sativa HOM05D006406 ORTHO05D007883 3.4e-11 73.6 163 36.2
Cre09.g392700 Chlamydomonas reinhardtii HOM05D006406 ORTHO05D007883 1.3e-07 61.6 45 60.0


User provided reference genes

Program Settings