Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G228200 Glycine max HOM05D006340 ORTHO05D007568 1.1e-288 996.5 718 100.0
Glyma.03G231000 Glycine max HOM05D006340 ORTHO05D007568 2.0e-202 709.9 636 91.4
Phvul.001G224800 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 1.2e-175 620.9 641 84.6
VMungo1383G0056 Vigna mungo HOM05D006340 ORTHO05D007568 7.8e-167 591.7 642 82.2
Glyma.10G146700 Glycine max HOM05D006340 ORTHO05D007568 5.7e-125 452.6 647 71.3
Glyma.20G096700 Glycine max HOM05D006340 ORTHO05D007568 2.0e-122 444.1 647 70.5
Ca_10176_v3 Cicer arietinum L. HOM05D006340 ORTHO05D007568 1.2e-119 434.9 655 69.2
Medtr1g084120 Medicago truncatula HOM05D006340 ORTHO05D007568 9.7e-117 425.2 652 65.2
Phvul.007G201700 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 1.1e-115 421.8 647 68.5
Lalb_Chr02g0147781 Lupinus albus HOM05D006340 ORTHO05D007568 5.1e-110 402.9 648 66.7
TPR.G2586 Trifolium pratense HOM05D006340 ORTHO05D007568 8.2e-108 395.6 671 65.4
QL03p014074 Quercus lobata HOM05D006340 ORTHO05D007568 5.3e-107 392.9 653 66.9
Lj5g0007706 Lotus japonicus HOM05D006340 ORTHO05D007568 5.0e-105 386.3 646 64.4
VMungo0720G2454 Vigna mungo HOM05D006340 ORTHO05D007568 1.1e-99 368.6 648 64.5
Cfa006707 Carpinus fangiana HOM05D006340 ORTHO05D007568 4.1e-99 366.7 652 64.7
TAR362G0132 Trochodendron aralioides HOM05D006340 ORTHO05D007568 5.0e-97 359.8 653 63.6
arahy.Tifrunner.gnm1.ann1.31L8TN Arachis hypogaea HOM05D006340 ORTHO05D007568 1.9e-96 357.8 657 64.4
arahy.Tifrunner.gnm1.ann1.35WTTC Arachis hypogaea HOM05D006340 ORTHO05D007568 1.9e-96 357.8 654 64.5
Haze_04056 Corylus avellana HOM05D006340 ORTHO05D007568 1.9e-96 357.8 652 60.0
CiPaw.07G030100 Carya illinoinensis HOM05D006340 ORTHO05D007568 3.7e-92 343.6 651 64.1
TWI36G0703 Tripterygium wilfordii HOM05D006340 ORTHO05D007568 1.5e-88 331.6 654 62.7
Thecc.05G323700 Theobroma cacao HOM05D006340 ORTHO05D007568 3.6e-87 327.0 654 61.2
Psat6g152600 Pisum sativum HOM05D006340 ORTHO05D007568 4.7e-87 326.6 499 57.3
Prupe.6G312400 Prunus persica HOM05D006340 ORTHO05D007568 6.8e-86 322.8 660 61.2
Potri.005G013000 Populus trichocarpa HOM05D006340 ORTHO05D007568 4.4e-85 320.1 655 61.1
Duzib177G0712 Durio zibethinus HOM05D006340 ORTHO05D007568 1.3e-84 318.5 659 61.0
Ciclev10000538m.g Citrus clementina HOM05D006340 ORTHO05D007568 3.7e-84 317.0 653 62.0
CiPaw.08G154900 Carya illinoinensis HOM05D006340 ORTHO05D007568 5.4e-83 313.2 642 63.1
CSS0010691 Camellia sinensis var. sinensis HOM05D006340 ORTHO05D007568 7.0e-83 312.8 657 60.3
Atru.chr2.357 Acer truncatum HOM05D006340 ORTHO05D007568 1.2e-82 312.0 647 61.5
Actinidia35518 Actinidia chinensis HOM05D006340 ORTHO05D007568 2.0e-82 311.2 668 60.2
Potri.013G008200 Populus trichocarpa HOM05D006340 ORTHO05D007568 1.3e-81 308.5 650 60.0
Cpa.g.sc48.167 Carica papaya HOM05D006340 ORTHO05D007568 3.8e-81 307.0 656 61.3
Dinv30898 Davidia involucrata HOM05D006340 ORTHO05D007568 5.5e-80 303.1 631 41.0
Manes.09G177400 Manihot esculenta HOM05D006340 ORTHO05D007568 5.5e-80 303.1 636 52.5
Hma1.2p1_0008F-1.1_g005560 Hydrangea macrophylla HOM05D006340 ORTHO05D007568 3.6e-79 300.4 641 61.2
Gohir.D11G284300 Gossypium hirsutum HOM05D006340 ORTHO05D007568 4.7e-79 300.1 654 60.9
MD00G1208300 Malus domestica HOM05D006340 ORTHO05D007568 2.3e-78 297.7 658 59.1
TAR633G1326 Trochodendron aralioides HOM05D006340 ORTHO05D007568 2.6e-77 294.3 650 59.7
Gorai.007G307200 Gossypium raimondii HOM05D006340 ORTHO05D007568 4.9e-76 290.0 654 60.2
Sed0011043 Sechium edule HOM05D006340 ORTHO05D007568 1.1e-75 288.9 647 60.0
GSVIVG01031248001 Vitis vinifera HOM05D006340 ORTHO05D007568 1.8e-75 288.1 646 59.9
COL.COLO4_05545 Corchorus olitorius HOM05D006340 ORTHO05D007568 2.0e-74 284.6 658 58.8
CsaV3_2G007150 Cucumis sativus L. HOM05D006340 ORTHO05D007568 2.0e-74 284.6 635 59.5
Gorai.004G236300 Gossypium raimondii HOM05D006340 ORTHO05D007568 4.5e-74 283.5 656 59.0
Lju926C5T2 Lonicera japonica HOM05D006340 ORTHO05D007568 2.9e-73 280.8 632 54.4
Sabra13G0006900 Salix brachista HOM05D006340 ORTHO05D007568 3.8e-73 280.4 657 49.8
MD12G1205300 Malus domestica HOM05D006340 ORTHO05D007568 5.0e-73 280.0 658 57.6
Duzib128G1170 Durio zibethinus HOM05D006340 ORTHO05D007568 8.6e-73 279.3 641 61.2
Actinidia16863 Actinidia chinensis HOM05D006340 ORTHO05D007568 1.1e-72 278.9 685 47.7
Nn3g21728 Nelumbo nucifera HOM05D006340 ORTHO05D007568 1.9e-72 278.1 657 59.8
Sed0017369 Sechium edule HOM05D006340 ORTHO05D007568 2.5e-72 277.7 646 58.4
ClCG02G014860 Citrullus lanatus HOM05D006340 ORTHO05D007568 4.7e-71 273.5 669 44.4
MBI18_g32031_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 6.1e-71 273.1 657 43.1
Aqoxy2G02721 Aquilegia oxysepala HOM05D006340 ORTHO05D007568 1.4e-70 271.9 657 58.3
DCAR_025287 Daucus carota HOM05D006340 ORTHO05D007568 2.3e-70 271.2 645 57.8
CANSAT54G2981 Cannabis sativa HOM05D006340 ORTHO05D007568 4.0e-70 270.4 657 56.8
Gohir.D08G222500 Gossypium hirsutum HOM05D006340 ORTHO05D007568 6.8e-70 269.6 656 58.2
Gohir.A08G205400 Gossypium hirsutum HOM05D006340 ORTHO05D007568 4.4e-69 266.9 658 57.9
Sabra05G0021400 Salix brachista HOM05D006340 ORTHO05D007568 3.2e-67 260.8 683 34.0
Cc02_g35160 Coffea canephora HOM05D006340 ORTHO05D007568 5.4e-67 260.0 651 53.3
MBI19_g03242_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 5.4e-67 260.0 648 48.5
MELO3C004178.2 Cucumis melo HOM05D006340 ORTHO05D007568 1.6e-66 258.5 645 48.4
Lj5C328T5 Lonicera japonica HOM05D006340 ORTHO05D007568 6.0e-66 256.5 627 54.2
PSO761G0363 Papaver somniferum HOM05D006340 ORTHO05D007568 3.3e-64 250.8 636 57.4
Lsat_1_v5_gn_5_40480 Lactuca sativa HOM05D006340 ORTHO05D007568 8.9e-62 242.7 640 56.7
ATR0693G206 Amborella trichopoda HOM05D006340 ORTHO05D007568 2.4e-59 234.6 645 56.9
Os01g0300900 Oryza sativa ssp. japonica HOM05D006340 ORTHO05D007568 2.4e-59 234.6 647 49.5
vmacro01568 Vaccinium macrocarpon HOM05D006340 ORTHO05D007568 3.2e-59 234.2 661 46.0
HanXRQChr11g0324231 Helianthus annuus HOM05D006340 ORTHO05D007568 5.4e-59 233.4 627 57.9
ECA246G2180 Erigeron canadensis HOM05D006340 ORTHO05D007568 7.0e-59 233.0 640 57.3
arahy.Tifrunner.gnm1.ann1.Y7QP4L Arachis hypogaea HOM05D006340 ORTHO05D007568 2.7e-58 231.1 637 54.3
AUR62006742 Chenopodium quinoa HOM05D006340 ORTHO05D007568 6.0e-58 229.9 639 56.8
Zm00001eb340330 Zea mays HOM05D006340 ORTHO05D007568 1.3e-57 228.8 657 52.2
PSO210G6591 Papaver somniferum HOM05D006340 ORTHO05D007568 1.7e-57 228.4 535 62.8
PGR031G1700 Punica granatum HOM05D006340 ORTHO05D007568 5.0e-57 226.9 639 57.7
Eucgr.H03294 Eucalyptus grandis HOM05D006340 ORTHO05D007568 6.6e-57 226.5 644 55.6
Zm00001eb130130 Zea mays HOM05D006340 ORTHO05D007568 1.5e-56 225.3 643 47.3
Hund07311 Selenicereus undatus HOM05D006340 ORTHO05D007568 5.6e-56 223.4 637 56.0
AUR62000387 Chenopodium quinoa HOM05D006340 ORTHO05D007568 2.1e-55 221.5 630 57.5
Rhsim11G0096500 Rhododendron simsii HOM05D006340 ORTHO05D007568 3.6e-55 220.7 657 51.0
PGSC0003DMG400002763 Solanum tuberosum HOM05D006340 ORTHO05D007568 3.4e-53 214.2 654 54.9
DCAR_029344 Daucus carota HOM05D006340 ORTHO05D007568 7.5e-53 213.0 623 41.7
Dinv24462 Davidia involucrata HOM05D006340 ORTHO05D007568 7.5e-53 213.0 332 42.5
Nitab4.5_0001338g0100 Nicotiana tabacum HOM05D006340 ORTHO05D007568 1.7e-52 211.8 671 48.4
Sopen01g044100 Solanum pennellii HOM05D006340 ORTHO05D007568 2.9e-52 211.1 662 54.1
CAN.G1076.21 Capsicum annuum HOM05D006340 ORTHO05D007568 1.4e-51 208.8 645 50.2
Nitab4.5_0004525g0020 Nicotiana tabacum HOM05D006340 ORTHO05D007568 2.4e-51 208.0 645 49.9
Oeu053742.1 Olea europaea HOM05D006340 ORTHO05D007568 2.7e-50 204.5 639 53.8
Oeu052936.1 Olea europaea HOM05D006340 ORTHO05D007568 3.5e-50 204.1 647 55.3
Ah.06g195990 Amaranthus hybridus HOM05D006340 ORTHO05D007568 1.3e-49 202.2 632 54.3
EL10Ac4g09463 Beta vulgaris HOM05D006340 ORTHO05D007568 5.1e-49 200.3 626 55.3
HPP92_005420 Vanilla planifolia HOM05D006340 ORTHO05D007568 5.1e-49 200.3 634 55.5
RcHm_v2.0_Chr3g0457201 Rosa chinensis HOM05D006340 ORTHO05D007568 1.5e-48 198.7 665 52.6
THA.LOC104816894 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 3.3e-48 197.6 622 46.9
FvH4_6g07501 Fragaria vesca HOM05D006340 ORTHO05D007568 1.8e-46 191.8 672 52.1
FAN02G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 5.2e-46 190.3 672 52.7
FAN14G3207 Fragaria x ananassa HOM05D006340 ORTHO05D007568 3.4e-45 187.6 672 51.9
arahy.Tifrunner.gnm1.ann1.9H9EE5 Arachis hypogaea HOM05D006340 ORTHO05D007568 1.6e-42 178.7 653 41.2
Migut.N00937 Erythranthe guttata HOM05D006340 ORTHO05D007568 3.5e-42 177.6 637 49.1
Sabra05G0020800 Salix brachista HOM05D006340 ORTHO05D007568 6.2e-39 166.8 361 60.7
Sc16g0009070 Simmondsia chinensis HOM05D006340 ORTHO05D007568 7.6e-37 159.8 470 48.3
FAN09G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 1.1e-35 156.0 523 46.1
Gohir.A11G274100 Gossypium hirsutum HOM05D006340 ORTHO05D007568 1.1e-35 156.0 500 47.8
Solyc01g100600.4 Solanum lycopersicum HOM05D006340 ORTHO05D007568 1.0e-33 149.4 499 42.7
Peaxi162Scf01061g00014 Petunia axillaris HOM05D006340 ORTHO05D007568 4.8e-31 140.6 514 28.4
Sabra05G0009200 Salix brachista HOM05D006340 ORTHO05D007568 1.4e-30 139.0 203 77.3
Sabra05G0020900 Salix brachista HOM05D006340 ORTHO05D007568 2.0e-29 135.2 284 36.6
MSTRG.27938 Avicennia marina HOM05D006340 ORTHO05D007568 2.6e-29 134.8 359 32.3
PSO541G0443 Papaver somniferum HOM05D006340 ORTHO05D007568 2.5e-24 118.2 251 36.3
CDE02G0367 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 1.3e-23 115.9 627 42.4
Dinv24463 Davidia involucrata HOM05D006340 ORTHO05D007568 4.8e-23 114.0 177 79.1
Sabra05G0022400 Salix brachista HOM05D006340 ORTHO05D007568 4.8e-23 114.0 182 39.6
MSTRG.27937 Avicennia marina HOM05D006340 ORTHO05D007568 9.0e-22 109.8 204 65.2
CDE08G0055 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 2.0e-21 108.6 467 42.8
SGA_v2.0_scaffold5G02892 Striga asiatica HOM05D006340 ORTHO05D007568 4.5e-21 107.5 631 36.5
FAN05G4753 Fragaria x ananassa HOM05D006340 ORTHO05D007568 6.4e-20 103.6 443 45.4
SalBow3G0642 Salvia bowleyana HOM05D006340 ORTHO05D007568 1.9e-19 102.1 318 30.2
THA.LOC104824492 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 1.9e-16 92.0 51 72.5
unitig_52.g17414 Utricularia gibba HOM05D006340 ORTHO05D007568 2.1e-15 88.6 234 44.4
SMO115G0101 Selaginella moellendorffii HOM05D006340 ORTHO05D007568 4.5e-13 80.9 475 27.2
SMO201G0046 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 9.7e-08 63.2 46 52.2
Lsat_1_v5_gn_4_110741 Lactuca sativa HOM05D003320 ORTHO05D003941 1.6e-07 62.4 47 48.9
HanXRQChr16g0502481 Helianthus annuus HOM05D003320 ORTHO05D003941 2.2e-07 62.0 48 47.9
SMO228G0070 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 2.2e-07 62.0 46 52.2
SMO199G0080 Selaginella moellendorffii HOM05D003320 ORTHO05D011006 4.8e-07 60.8 46 52.2
SMO274G0045 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 4.8e-07 60.8 46 52.2
ECA232G1579 Erigeron canadensis HOM05D003320 ORTHO05D003941 6.3e-07 60.5 47 46.8
SMO022G0002 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 8.2e-07 60.1 47 53.2
HanXRQChr09g0270371 Helianthus annuus HOM05D003320 ORTHO05D003941 1.4e-06 59.3 47 44.7
PSO017G6858 Papaver somniferum HOM05D003320 ORTHO05D003941 1.4e-06 59.3 46 50.0
PSO478G2958 Papaver somniferum HOM05D003320 ORTHO05D003941 1.4e-06 59.3 46 50.0
SMO125G0002 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.4e-06 59.3 46 50.0
SGA_v2.0_scaffold176G39381 Striga asiatica HOM05D001137 ORTHO05D001967 1.4e-06 59.3 46 56.5
CSS0013666 Camellia sinensis var. sinensis HOM05D003320 ORTHO05D003941 1.8e-06 58.9 46 50.0
MBI16_g10850_MAGBIO Magnolia biondii HOM05D003320 ORTHO05D003941 1.8e-06 58.9 46 50.0
CBR_g42082 Chara braunii HOM05D003320 ORTHO05D003941 2.4e-06 58.5 47 46.8
Potri.008G031200 Populus trichocarpa HOM05D001137 ORTHO05D001967 2.4e-06 58.5 46 58.7
Sabra08G0020600 Salix brachista HOM05D001137 ORTHO05D001967 2.4e-06 58.5 46 58.7
SMO360G0028 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 3.1e-06 58.2 46 50.0
Peaxi162Scf00201g00346 Petunia axillaris HOM05D003320 ORTHO05D003941 4.1e-06 57.8 46 52.2
ECA169G0006 Erigeron canadensis HOM05D006340 ORTHO05D007568 5.3e-06 57.4 50 58.0
MD06G1203300 Malus domestica HOM05D003320 ORTHO05D003941 5.3e-06 57.4 46 47.8
MD14G1213900 Malus domestica HOM05D003320 ORTHO05D003941 5.3e-06 57.4 46 47.8
Mapoly0031s0090 Marchantia polymorpha HOM05D003320 ORTHO05D003941 5.3e-06 57.4 47 44.7
Potri.010G230300 Populus trichocarpa HOM05D001137 ORTHO05D001967 5.3e-06 57.4 46 56.5
Sabra10G0178700 Salix brachista HOM05D001137 ORTHO05D001967 5.3e-06 57.4 46 56.5
Oeu057198.3 Olea europaea HOM05D003320 ORTHO05D003941 6.9e-06 57.0 46 50.0
Psat4g047520 Pisum sativum HOM05D003320 ORTHO05D003941 6.9e-06 57.0 46 47.8
SMO077G0003 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 6.9e-06 57.0 46 47.8
SMO171G0124 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 6.9e-06 57.0 44 54.5
Migut.L00877 Erythranthe guttata HOM05D003320 ORTHO05D003941 9.0e-06 56.6 46 52.2
Eucgr.B01931 Eucalyptus grandis HOM05D001137 ORTHO05D001967 9.0e-06 56.6 46 54.3
Lj5A256T13 Lonicera japonica HOM05D001137 ORTHO05D001967 9.0e-06 56.6 43 51.2
Manes.10G052700 Manihot esculenta HOM05D001137 ORTHO05D001967 9.0e-06 56.6 46 56.5
Prupe.5G207100 Prunus persica HOM05D003320 ORTHO05D003941 9.0e-06 56.6 46 47.8
SMO253G0002 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 9.0e-06 56.6 46 47.8
Solyc11g007960.2 Solanum lycopersicum HOM05D001137 ORTHO05D001967 9.0e-06 56.6 46 56.5
Sopen11g003830 Solanum pennellii HOM05D001137 ORTHO05D001967 9.0e-06 56.6 46 56.5
PGSC0003DMG400027336 Solanum tuberosum HOM05D001137 ORTHO05D001967 9.0e-06 56.6 46 56.5
HPP92_006046 Vanilla planifolia HOM05D003320 ORTHO05D003941 9.0e-06 56.6 46 47.8


User provided reference genes

Program Settings