Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 7.4e-50 200.3 105 100.0
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 4.5e-39 164.5 106 85.8
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 1.3e-38 162.9 103 85.4
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 6.5e-38 160.6 103 84.5
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 3.6e-28 128.3 112 63.4
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 4.1e-24 114.8 106 66.0
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 2.2e-22 109.0 112 59.8
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 5.0e-22 107.8 93 65.6
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 1.5e-21 106.3 111 59.5
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 1.5e-21 106.3 102 64.7
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 3.2e-21 105.1 107 58.9
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 3.2e-21 105.1 88 67.0
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 4.7e-20 101.3 112 58.0
Medtr7g111180 Medicago truncatula HOM05D007325 ORTHO05D009251 8.0e-20 100.5 107 57.0
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 3.0e-19 98.6 91 61.5
arahy.Tifrunner.gnm1.ann1.GPC6YY Arachis hypogaea HOM05D007325 ORTHO05D009251 4.0e-19 98.2 76 65.8
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 6.8e-19 97.4 104 56.7
Medtr7g111170 Medicago truncatula HOM05D007325 ORTHO05D009251 6.8e-19 97.4 83 63.9
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 1.5e-18 96.3 101 59.4
Medtr1g085240 Medicago truncatula HOM05D007325 ORTHO05D009251 3.4e-18 95.1 82 64.6
Phvul.007G207000 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 4.8e-17 91.3 111 50.5
TPR.G8391 Trifolium pratense HOM05D007325 ORTHO05D009251 4.8e-17 91.3 107 57.0
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 6.3e-17 90.9 111 50.5
Glyma.10G141100 Glycine max HOM05D007325 ORTHO05D009251 3.1e-16 88.6 110 50.9
QL03p011419 Quercus lobata HOM05D007325 ORTHO05D009251 1.2e-15 86.7 72 62.5
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 1.6e-15 86.3 116 46.6
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 2.0e-15 85.9 106 54.7
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 2.7e-15 85.5 80 61.2
Lalb_Chr15g0077801 Lupinus albus HOM05D007325 ORTHO05D009251 4.5e-15 84.7 90 54.4
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 5.9e-15 84.3 72 65.3
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 2.9e-14 82.0 116 51.7
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 2.9e-14 82.0 90 55.6
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 3.8e-14 81.6 81 60.5
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 6.5e-14 80.9 103 50.5
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 1.1e-13 80.1 95 51.6
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 1.5e-13 79.7 73 60.3
Psat0s4029g0040 Pisum sativum HOM05D007325 ORTHO05D009251 1.5e-13 79.7 113 47.8
Eucgr.H01350 Eucalyptus grandis HOM05D007325 ORTHO05D009251 2.5e-13 79.0 111 49.5
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 3.2e-13 78.6 77 61.0
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 5.5e-13 77.8 86 52.3
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 7.2e-13 77.4 91 52.7
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 9.5e-13 77.0 91 52.7
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 9.5e-13 77.0 91 52.7
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 2.1e-12 75.9 103 48.5
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 3.6e-12 75.1 86 55.8
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 8.0e-12 73.9 102 50.0
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.4e-11 73.2 81 56.8
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.4e-11 73.2 81 56.8
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.4e-11 73.2 81 56.8
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 2.3e-11 72.4 109 45.9
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 4.0e-11 71.6 93 51.6
FAN14G5110 Fragaria x ananassa HOM05D007325 ORTHO05D009251 8.8e-11 70.5 54 68.5
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 1.2e-10 70.1 83 57.8
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 1.2e-10 70.1 83 57.8
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 1.2e-10 70.1 83 57.8
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 1.2e-10 70.1 72 55.6
Potri.005G000401 Populus trichocarpa HOM05D007325 ORTHO05D009251 2.0e-10 69.3 86 52.3
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 4.4e-10 68.2 105 44.8
Lj9P239T47 Lonicera japonica HOM05D007325 ORTHO05D009251 4.4e-10 68.2 78 52.6
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 1.3e-09 66.6 70 60.0
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 1.3e-09 66.6 70 60.0
Lsat_1_v5_gn_9_83741 Lactuca sativa HOM05D007325 ORTHO05D009251 2.2e-09 65.9 86 48.8
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 4.9e-09 64.7 111 46.8
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 4.9e-09 64.7 91 48.4
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 6.3e-09 64.3 65 56.9
ATR0693G152 Amborella trichopoda HOM05D007325 ORTHO05D009251 1.4e-08 63.2 89 43.8
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 5.4e-08 61.2 76 50.0
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 7.0e-08 60.8 96 40.6
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 1.2e-07 60.1 94 45.7
TAR365G1009 Trochodendron aralioides HOM05D007325 ORTHO05D009251 1.2e-07 60.1 92 40.2
SalBow6G6911 Salvia bowleyana HOM05D007325 ORTHO05D009251 2.0e-07 59.3 91 47.3
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 2.0e-07 59.3 92 43.5
AT5G26731 Arabidopsis thaliana HOM05D007325 ORTHO05D009251 7.7e-07 57.4 94 46.8
Carub.0003s0533 Capsella rubella HOM05D007325 ORTHO05D009251 1.7e-06 56.2 83 49.4
BraA03t12615Z Brassica rapa HOM05D007325 ORTHO05D009251 2.3e-06 55.8 83 51.8
Migut.B00680 Erythranthe guttata HOM05D007325 ORTHO05D009251 2.9e-06 55.5 92 43.5
MBI18_g03881_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 2.9e-06 55.5 51 56.9
TWI14G0425 Tripterygium wilfordii HOM05D007325 ORTHO05D009251 2.9e-06 55.5 74 52.7
A05p42120 Brassica napus HOM05D007325 ORTHO05D009251 8.6e-06 53.9 70 51.4
BraA05t22930Z Brassica rapa HOM05D007325 ORTHO05D009251 8.6e-06 53.9 70 51.4


User provided reference genes

Program Settings