Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G223500 Glycine max HOM05D007316 ORTHO05D009393 2.6e-29 131.3 64 100.0
Glyma.03G226500 Glycine max HOM05D007316 ORTHO05D009393 2.8e-28 127.9 64 96.9
Phvul.001G220400 Phaseolus vulgaris HOM05D007316 ORTHO05D009393 4.9e-28 127.1 64 96.9
Medtr7g111090 Medicago truncatula HOM05D007316 ORTHO05D009393 2.7e-26 121.3 64 92.2
Ca_09261_v3 Cicer arietinum L. HOM05D007316 ORTHO05D009393 4.5e-26 120.6 64 89.1
arahy.Tifrunner.gnm1.ann1.AE1MMP Arachis hypogaea HOM05D007316 ORTHO05D009393 7.7e-26 119.8 64 90.6
arahy.Tifrunner.gnm1.ann1.CUXT1U Arachis hypogaea HOM05D007316 ORTHO05D009393 7.7e-26 119.8 64 90.6
Psat3g015560 Pisum sativum HOM05D007316 ORTHO05D009393 2.3e-25 118.2 64 87.5
Manes.17G057300 Manihot esculenta HOM05D007316 ORTHO05D009393 1.1e-24 115.9 64 85.9
Lj1g0006735 Lotus japonicus HOM05D007316 ORTHO05D009393 1.5e-24 115.5 63 84.1
Ciclev10023234m.g Citrus clementina HOM05D007316 ORTHO05D009393 1.2e-23 112.5 64 85.9
Potri.004G058400 Populus trichocarpa HOM05D007316 ORTHO05D009393 1.2e-23 112.5 64 82.8
RcHm_v2.0_Chr4g0387941 Rosa chinensis HOM05D007316 ORTHO05D009393 3.6e-23 110.9 64 79.7
RcHm_v2.0_Chr4g0385941 Rosa chinensis HOM05D007316 ORTHO05D009393 4.7e-23 110.5 64 79.7
Potri.011G067800 Populus trichocarpa HOM05D007316 ORTHO05D009393 1.0e-22 109.4 64 79.7
QL09p015786 Quercus lobata HOM05D007316 ORTHO05D009393 1.4e-22 109.0 63 81.0
QL09p023249 Quercus lobata HOM05D007316 ORTHO05D009393 1.4e-22 109.0 63 81.0
RcHm_v2.0_Chr4g0387841 Rosa chinensis HOM05D007316 ORTHO05D009393 1.4e-22 109.0 64 78.1
THA.LOC104813939 Tarenaya hassleriana HOM05D007316 ORTHO05D009393 1.4e-22 109.0 64 81.2
QL02p030600 Quercus lobata HOM05D007316 ORTHO05D009393 1.8e-22 108.6 63 81.0
Cfa016046 Carpinus fangiana HOM05D007316 ORTHO05D009393 2.3e-22 108.2 64 79.7
FvH4_4g00490 Fragaria vesca HOM05D007316 ORTHO05D009393 2.3e-22 108.2 64 78.1
FAN12G3999 Fragaria x ananassa HOM05D007316 ORTHO05D009393 2.3e-22 108.2 64 78.1
FAN17G1024 Fragaria x ananassa HOM05D007316 ORTHO05D009393 2.3e-22 108.2 64 78.1
FAN22G1131 Fragaria x ananassa HOM05D007316 ORTHO05D009393 2.3e-22 108.2 64 78.1
Prupe.3G122600 Prunus persica HOM05D007316 ORTHO05D009393 2.3e-22 108.2 64 81.2
GSVIVG01029768001 Vitis vinifera HOM05D007316 ORTHO05D009393 2.3e-22 108.2 64 81.2
A07p29930 Brassica napus HOM05D007316 ORTHO05D009393 3.0e-22 107.8 64 79.7
C06p34200 Brassica napus HOM05D007316 ORTHO05D009393 3.0e-22 107.8 64 79.7
BolC6t38541H Brassica oleracea HOM05D007316 ORTHO05D009393 3.0e-22 107.8 64 79.7
BraA07t30632Z Brassica rapa HOM05D007316 ORTHO05D009393 3.0e-22 107.8 64 79.7
CANSAT56G2903 Cannabis sativa HOM05D007316 ORTHO05D009393 4.0e-22 107.5 64 81.2
Duzib128G0483 Durio zibethinus HOM05D007316 ORTHO05D009393 4.0e-22 107.5 64 79.7
SalBow3G1440 Salvia bowleyana HOM05D007316 ORTHO05D009393 4.0e-22 107.5 64 81.2
ClCG09G016900 Citrullus lanatus HOM05D007316 ORTHO05D009393 6.8e-22 106.7 64 81.2
CsaV3_2G036390 Cucumis sativus L. HOM05D007316 ORTHO05D009393 6.8e-22 106.7 64 81.2
Gohir.D13G105800 Gossypium hirsutum HOM05D007316 ORTHO05D009393 6.8e-22 106.7 64 79.7
Sed0015703 Sechium edule HOM05D007316 ORTHO05D009393 6.8e-22 106.7 64 81.2
CSS0014503 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.2e-21 105.9 61 80.3
CSS0021979 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.2e-21 105.9 61 80.3
Thecc.05G261200 Theobroma cacao HOM05D007316 ORTHO05D009393 1.5e-21 105.5 64 79.7
TWI23G0494 Tripterygium wilfordii HOM05D007316 ORTHO05D009393 1.5e-21 105.5 64 76.6
Atru.chr12.1494 Acer truncatum HOM05D007316 ORTHO05D009393 2.0e-21 105.1 64 81.2
MELO3C021892.2 Cucumis melo HOM05D007316 ORTHO05D009393 2.0e-21 105.1 64 79.7
Hma1.2p1_0157F.1_g069460 Hydrangea macrophylla HOM05D007316 ORTHO05D009393 2.0e-21 105.1 64 79.7
Sp5g28140 Schrenkiella parvula HOM05D007316 ORTHO05D009393 2.0e-21 105.1 64 76.6
Cc02_g36870 Coffea canephora HOM05D007316 ORTHO05D009393 2.6e-21 104.8 65 81.5
Duzib106G1284 Durio zibethinus HOM05D007316 ORTHO05D009393 2.6e-21 104.8 64 78.1
Lalb_Chr04g0260251 Lupinus albus HOM05D007316 ORTHO05D009393 2.6e-21 104.8 62 79.0
Eucgr.H00565 Eucalyptus grandis HOM05D007316 ORTHO05D009393 3.4e-21 104.4 64 76.6
Aa31LG4G3460 Aethionema arabicum HOM05D007316 ORTHO05D009393 5.7e-21 103.6 64 76.6
CSS0015421 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 7.5e-21 103.2 61 78.7
Migut.B00683 Erythranthe guttata HOM05D007316 ORTHO05D009393 7.5e-21 103.2 64 75.0
Migut.B00911 Erythranthe guttata HOM05D007316 ORTHO05D009393 7.5e-21 103.2 64 75.0
AL2G32940 Arabidopsis lyrata HOM05D007316 ORTHO05D009393 1.3e-20 102.4 64 75.0
MD09G1239400 Malus domestica HOM05D007316 ORTHO05D009393 1.3e-20 102.4 59 81.4
AT1G73177 Arabidopsis thaliana HOM05D007316 ORTHO05D009393 2.2e-20 101.7 64 73.4
Cpa.g.sc233.10 Carica papaya HOM05D007316 ORTHO05D009393 2.2e-20 101.7 65 78.5
Carub.0002s1996 Capsella rubella HOM05D007316 ORTHO05D009393 8.3e-20 99.8 64 71.9
PGR119G2118 Punica granatum HOM05D007316 ORTHO05D009393 1.4e-19 99.0 64 73.4
Aqoxy7G02856 Aquilegia oxysepala HOM05D007316 ORTHO05D009393 1.8e-19 98.6 62 72.6
CARHR066170 Cardamine hirsuta HOM05D007316 ORTHO05D009393 3.2e-19 97.8 64 71.9
BcaC08g45665 Brassica carinata HOM05D007316 ORTHO05D009393 5.4e-19 97.1 79 64.6
CSS0022236 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 5.4e-19 97.1 61 75.4
Peaxi162Scf00071g00128 Petunia axillaris HOM05D007316 ORTHO05D009393 9.2e-19 96.3 61 73.8
Sopen08g002530 Solanum pennellii HOM05D007316 ORTHO05D009393 3.5e-18 94.4 61 75.4
COL.COLO4_20544 Corchorus olitorius HOM05D007316 ORTHO05D009393 4.6e-18 94.0 65 70.8
Lsat_1_v5_gn_9_84180 Lactuca sativa HOM05D007316 ORTHO05D009393 5.9e-18 93.6 59 72.9
HanXRQChr07g0193721 Helianthus annuus HOM05D007316 ORTHO05D009393 7.8e-18 93.2 59 74.6
PGSC0003DMG400026307 Solanum tuberosum HOM05D007316 ORTHO05D009393 2.3e-17 91.7 61 72.1
CiPaw.05G216300 Carya illinoinensis HOM05D007316 ORTHO05D009393 2.3e-14 81.6 50 78.0
Thhalv10019421m.g Eutrema salsugineum HOM05D007316 ORTHO05D009393 2.3e-14 81.6 59 67.8
TAR362G0014 Trochodendron aralioides HOM05D007316 ORTHO05D009393 2.3e-14 81.6 43 88.4
Oeu034759.1 Olea europaea HOM05D007316 ORTHO05D009393 5.8e-13 77.0 44 81.8
Nn7g37509 Nelumbo nucifera HOM05D007316 ORTHO05D009393 1.3e-12 75.9 42 83.3
CSS0021742 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.7e-12 75.5 52 67.3
vmacro19806 Vaccinium macrocarpon HOM05D007316 ORTHO05D009393 2.2e-12 75.1 43 83.7
GSVIVG01026029001 Vitis vinifera HOM05D007316 ORTHO05D009393 2.2e-12 75.1 44 77.3
CSS0008863 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 4.9e-12 73.9 44 77.3
CSS0044079 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 4.9e-12 73.9 44 77.3
Os07g0633800 Oryza sativa ssp. japonica HOM05D007316 ORTHO05D009393 4.9e-12 73.9 57 59.6
CSS0028514 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.4e-12 73.6 44 75.0
CSS0044918 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.4e-12 73.6 44 75.0
CSS0047183 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.4e-12 73.6 44 75.0
ECA236G4186 Erigeron canadensis HOM05D007316 ORTHO05D009393 6.4e-12 73.6 60 60.0
CSS0047605 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 4.1e-11 70.9 44 72.7
CSS0025187 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 5.4e-11 70.5 44 70.5
Actinidia11709 Actinidia chinensis HOM05D007316 ORTHO05D009393 3.5e-10 67.8 34 88.2
MBI18_g28941_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D004701 7.8e-10 66.6 43 69.8
Ah.09g230190 Amaranthus hybridus HOM05D007316 ORTHO05D009393 1.7e-09 65.5 43 72.1
Gorai.013G118500 Gossypium raimondii HOM05D007316 ORTHO05D009393 3.0e-09 64.7 64 56.2
EL10Ac8g18312 Beta vulgaris HOM05D007316 ORTHO05D009393 1.5e-08 62.4 43 72.1
AUR62021328 Chenopodium quinoa HOM05D007316 ORTHO05D009393 1.5e-08 62.4 43 69.8
Rhsim05G0117300 Rhododendron simsii HOM05D007316 ORTHO05D009393 2.5e-08 61.6 64 54.7
RhsimUnG0015700 Rhododendron simsii HOM05D007316 ORTHO05D009393 2.5e-08 61.6 64 54.7
Gohir.A13G102600 Gossypium hirsutum HOM05D007316 ORTHO05D009393 7.3e-08 60.1 64 53.1
Mapoly0010s0075 Marchantia polymorpha HOM05D007316 ORTHO05D009393 1.6e-07 58.9 52 48.1
unitig_749.g14119 Utricularia gibba HOM05D007316 ORTHO05D009393 1.1e-06 56.2 75 42.7
MCO03G596 Micromonas commoda HOM05D007316 ORTHO05D009393 1.4e-06 55.8 53 45.3
CAN.G530.4 Capsicum annuum HOM05D007316 ORTHO05D009393 8.9e-06 53.1 34 67.6


User provided reference genes

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