Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G212200 Glycine max HOM05D003556 ORTHO05D003404 2.3e-94 349.0 184 100.0
Glyma.03G215700 Glycine max HOM05D003556 ORTHO05D003404 3.1e-83 312.0 185 90.3
Phvul.009G236000 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 8.6e-70 267.3 185 75.7
VMungo1309G0611 Vigna mungo HOM05D003556 ORTHO05D003404 2.5e-69 265.8 185 74.6
Phvul.001G209000 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 5.6e-69 264.6 197 71.6
Phvul.001G208900 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 2.6e-66 255.8 193 70.5
Phvul.001G208700 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 2.9e-65 252.3 193 70.5
Phvul.001G208800 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 9.3e-64 247.3 193 68.9
VMungo1383G0005 Vigna mungo HOM05D003556 ORTHO05D003404 2.5e-61 239.2 190 68.4
Lalb_Chr04g0259851 Lupinus albus HOM05D003556 ORTHO05D003404 4.3e-61 238.4 181 73.5
Phvul.001G208600 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 5.6e-61 238.0 193 66.3
Lj1g0023613 Lotus japonicus HOM05D003556 ORTHO05D003404 7.3e-61 237.7 182 70.3
VMungo1383G2652 Vigna mungo HOM05D003556 ORTHO05D003404 9.0e-59 230.7 178 68.0
VMungo0331G0621 Vigna mungo HOM05D003556 ORTHO05D003404 5.8e-58 228.0 188 66.5
Ca_09185_v3 Cicer arietinum L. HOM05D003556 ORTHO05D003404 7.6e-58 227.6 162 70.4
Medtr7g108865 Medicago truncatula HOM05D003556 ORTHO05D003404 1.4e-56 223.4 176 67.6
Lalb_Chr15g0078461 Lupinus albus HOM05D003556 ORTHO05D003404 7.1e-56 221.1 178 69.1
Psat0s1683g0040 Pisum sativum HOM05D003556 ORTHO05D003404 1.2e-55 220.3 173 65.3
TPR.G9645 Trifolium pratense HOM05D003556 ORTHO05D003404 2.7e-55 219.2 175 66.9
Lalb_Chr02g0146451 Lupinus albus HOM05D003556 ORTHO05D003404 1.9e-53 213.0 164 64.6
Lj5g0004990 Lotus japonicus HOM05D003556 ORTHO05D003404 4.0e-51 205.3 167 64.1
Medtr4g071020 Medicago truncatula HOM05D003556 ORTHO05D003404 4.9e-49 198.4 178 61.8
Lalb_Chr06g0166521 Lupinus albus HOM05D003556 ORTHO05D003404 4.2e-48 195.3 175 58.3
TPR.G30505 Trifolium pratense HOM05D002265 ORTHO05D002400 7.1e-48 194.5 180 56.1
VMungo0720G1834 Vigna mungo HOM05D003556 ORTHO05D003404 2.1e-47 193.0 168 59.5
Psat7g183080 Pisum sativum HOM05D003556 ORTHO05D003404 4.6e-47 191.8 173 57.8
Ca_20910_v3 Cicer arietinum L. HOM05D003556 ORTHO05D003404 6.0e-47 191.4 195 53.3
Glyma.10G017300 Glycine max HOM05D003556 ORTHO05D003404 5.6e-45 184.9 179 55.9
Phvul.007G246800 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 7.4e-45 184.5 179 55.3
VMungo1309G2342 Vigna mungo HOM05D003556 ORTHO05D003404 9.6e-45 184.1 154 60.4
Glyma.02G016700 Glycine max HOM05D003556 ORTHO05D003404 2.1e-44 183.0 177 54.2
arahy.Tifrunner.gnm1.ann1.HDU51Y Arachis hypogaea HOM05D003556 ORTHO05D003404 1.4e-40 170.2 186 50.0
arahy.Tifrunner.gnm1.ann1.GMFP2F Arachis hypogaea HOM05D003556 ORTHO05D003404 2.5e-40 169.5 192 49.5
Haze_04964 Corylus avellana HOM05D003556 ORTHO05D003404 6.9e-27 124.8 162 42.6
Cfa005888 Carpinus fangiana HOM05D003556 ORTHO05D003404 6.5e-25 118.2 168 39.9
CsaV3_4G000950 Cucumis sativus L. HOM05D003556 ORTHO05D003404 4.2e-24 115.5 177 39.5
ClCG10G011070 Citrullus lanatus HOM05D003556 ORTHO05D003404 2.3e-22 109.8 175 40.6
CANSAT25G1336 Cannabis sativa HOM05D003556 ORTHO05D003404 3.9e-22 109.0 149 39.6
CSS0043898 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 8.8e-22 107.8 145 37.9
PGR119G1148 Punica granatum HOM05D003556 ORTHO05D003404 2.5e-21 106.3 189 38.1
SHI15103 Sapria himalayana HOM05D003556 ORTHO05D003404 2.5e-21 106.3 172 39.0
MELO3C017944.2 Cucumis melo HOM05D003556 ORTHO05D003404 4.3e-21 105.5 148 39.9
FvH4_2g25950 Fragaria vesca HOM05D003556 ORTHO05D003404 9.7e-21 104.4 148 38.5
FAN24G2751 Fragaria x ananassa HOM05D003556 ORTHO05D003404 9.7e-21 104.4 148 38.5
FAN20G1394 Fragaria x ananassa HOM05D003556 ORTHO05D003404 1.3e-20 104.0 148 38.5
FAN15G3222 Fragaria x ananassa HOM05D003556 ORTHO05D003404 1.7e-20 103.6 148 37.8
QL12p028082 Quercus lobata HOM05D003556 ORTHO05D003404 1.1e-19 100.9 173 35.8
Actinidia21437 Actinidia chinensis HOM05D003556 ORTHO05D003404 1.4e-19 100.5 167 37.7
CSS0044540 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 1.8e-19 100.1 177 36.2
MD11G1307600 Malus domestica HOM05D003556 ORTHO05D003404 1.8e-19 100.1 156 36.5
FAN27G3015 Fragaria x ananassa HOM05D003556 ORTHO05D003404 4.1e-19 99.0 148 37.8
Potri.004G016500 Populus trichocarpa HOM05D003556 ORTHO05D003404 4.1e-19 99.0 185 34.6
Sabra11G0000800 Salix brachista HOM05D003556 ORTHO05D003404 4.1e-19 99.0 176 35.8
CiPaw.08G093400 Carya illinoinensis HOM05D003556 ORTHO05D003404 9.1e-19 97.8 179 35.2
Potri.001G127500 Populus trichocarpa HOM05D003556 ORTHO05D003404 2.6e-18 96.3 175 36.6
Sabra01G0098200 Salix brachista HOM05D003556 ORTHO05D003404 4.5e-18 95.5 171 36.3
Thecc.01G303600 Theobroma cacao HOM05D003556 ORTHO05D003404 5.9e-18 95.1 167 34.7
Aqoxy2G02898 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 2.2e-17 93.2 165 36.4
RcHm_v2.0_Chr6g0294271 Rosa chinensis HOM05D003556 ORTHO05D003404 2.2e-17 93.2 150 34.0
Aa31LG10G420 Aethionema arabicum HOM05D003556 ORTHO05D003404 1.1e-16 90.9 172 31.4
AL1G63880 Arabidopsis lyrata HOM05D003556 ORTHO05D003404 1.1e-16 90.9 176 29.5
Lj2A1197T77 Lonicera japonica HOM05D003556 ORTHO05D003404 1.1e-16 90.9 194 33.0
TAR216G0004 Trochodendron aralioides HOM05D003556 ORTHO05D003404 1.1e-16 90.9 169 36.7
PSO832G2602 Papaver somniferum HOM05D003556 ORTHO05D003404 1.4e-16 90.5 150 35.3
Sed0000124 Sechium edule HOM05D003556 ORTHO05D003404 1.4e-16 90.5 174 33.3
Atru.chr5.1112 Acer truncatum HOM05D003556 ORTHO05D003404 1.9e-16 90.1 138 33.3
MBI19_g44106_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 1.9e-16 90.1 151 39.7
PSO210G6958 Papaver somniferum HOM05D003556 ORTHO05D003404 2.5e-16 89.7 182 33.0
Rhsim13G0008900 Rhododendron simsii HOM05D003556 ORTHO05D003404 4.2e-16 89.0 150 33.3
Duzib133G0465 Durio zibethinus HOM05D003556 ORTHO05D003404 7.2e-16 88.2 174 32.8
THA.LOC104801288 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 9.4e-16 87.8 174 31.0
TAR362G0992 Trochodendron aralioides HOM05D003556 ORTHO05D003404 9.4e-16 87.8 174 33.3
A06p00030 Brassica napus HOM05D003556 ORTHO05D003404 1.2e-15 87.4 178 29.2
BraA06t23219Z Brassica rapa HOM05D003556 ORTHO05D003404 1.2e-15 87.4 178 29.2
Cfa005889 Carpinus fangiana HOM05D003556 ORTHO05D003404 1.2e-15 87.4 151 35.1
Aqoxy5G00783 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 1.6e-15 87.0 175 33.1
Dinv19674 Davidia involucrata HOM05D003556 ORTHO05D003404 1.6e-15 87.0 152 33.6
TWI14G0192 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 1.6e-15 87.0 174 29.9
Carub.0001s4433 Capsella rubella HOM05D003556 ORTHO05D003404 2.1e-15 86.7 174 29.3
ClCG03G017200 Citrullus lanatus HOM05D003556 ORTHO05D003404 2.1e-15 86.7 152 33.6
Dinv33067 Davidia involucrata HOM05D003556 ORTHO05D003404 2.1e-15 86.7 175 31.4
Nn3g21538 Nelumbo nucifera HOM05D003556 ORTHO05D003404 2.7e-15 86.3 149 36.2
TWI23G0284 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 2.7e-15 86.3 174 32.2
CARHR045450 Cardamine hirsuta HOM05D003556 ORTHO05D003404 3.6e-15 85.9 176 29.0
Sed0028173 Sechium edule HOM05D003556 ORTHO05D003404 3.6e-15 85.9 179 31.8
THA.LOC104825958 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 4.7e-15 85.5 170 31.8
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 6.1e-15 85.1 157 34.4
Thhalv10012280m.g Eutrema salsugineum HOM05D003556 ORTHO05D003404 7.9e-15 84.7 176 28.4
Haze_04963 Corylus avellana HOM05D003556 ORTHO05D003404 1.0e-14 84.3 176 32.4
CANSAT25G0193 Cannabis sativa HOM05D003556 ORTHO05D003404 1.4e-14 84.0 162 32.1
Thhalv10029000m.g Eutrema salsugineum HOM05D003556 ORTHO05D003404 1.4e-14 84.0 148 33.8
Aa31LG5G1910 Aethionema arabicum HOM05D003556 ORTHO05D003404 1.8e-14 83.6 151 32.5
CARHR250460 Cardamine hirsuta HOM05D003556 ORTHO05D003404 1.8e-14 83.6 148 33.8
TWI59G1361 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 1.8e-14 83.6 181 28.7
Ciclev10023798m.g Citrus clementina HOM05D003556 ORTHO05D003404 2.3e-14 83.2 149 35.6
MELO3C015291.2 Cucumis melo HOM05D003556 ORTHO05D003404 2.3e-14 83.2 153 33.3
A08p00310 Brassica napus HOM05D003556 ORTHO05D003404 3.0e-14 82.8 176 29.5
BraA08t32089Z Brassica rapa HOM05D003556 ORTHO05D003404 3.0e-14 82.8 176 29.5
CsaV3_1G038650 Cucumis sativus L. HOM05D003556 ORTHO05D003404 3.0e-14 82.8 153 32.0
Sp6g02140 Schrenkiella parvula HOM05D003556 ORTHO05D003404 3.0e-14 82.8 170 32.9
Carub.0006s3492 Capsella rubella HOM05D003556 ORTHO05D003404 5.1e-14 82.0 148 33.1
AL6G50890 Arabidopsis lyrata HOM05D003556 ORTHO05D003404 8.8e-14 81.3 148 33.1
AT1G55770 Arabidopsis thaliana HOM05D003556 ORTHO05D003404 8.8e-14 81.3 176 28.4
Cpa.g.sc48.109 Carica papaya HOM05D003556 ORTHO05D003404 1.5e-13 80.5 170 32.9
BcaB01g02062 Brassica carinata HOM05D003556 ORTHO05D003404 2.0e-13 80.1 174 32.8
BcaC08g44217 Brassica carinata HOM05D003556 ORTHO05D003404 2.0e-13 80.1 176 28.4
A03p31140 Brassica napus HOM05D003556 ORTHO05D003404 2.0e-13 80.1 147 33.3
C06p16220 Brassica napus HOM05D003556 ORTHO05D003404 2.0e-13 80.1 176 28.4
BolC6t36819H Brassica oleracea HOM05D003556 ORTHO05D003404 2.0e-13 80.1 176 28.4
BcaB01g02439 Brassica carinata HOM05D003556 ORTHO05D003404 2.6e-13 79.7 166 31.9
BraA03t12291Z Brassica rapa HOM05D003556 ORTHO05D003404 2.6e-13 79.7 147 33.3
THA.LOC104822713 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 2.6e-13 79.7 176 31.2
BcaC01g06767 Brassica carinata HOM05D003556 ORTHO05D003404 3.3e-13 79.3 171 31.6
BolC3t16082H Brassica oleracea HOM05D003556 ORTHO05D003404 3.3e-13 79.3 171 31.6
C03p37950 Brassica napus HOM05D003556 ORTHO05D003404 4.4e-13 79.0 170 31.2
Duzib138G0838 Durio zibethinus HOM05D003556 ORTHO05D003404 4.4e-13 79.0 148 32.4
Sp1g41350 Schrenkiella parvula HOM05D003556 ORTHO05D003404 4.4e-13 79.0 172 28.5
A02p24580 Brassica napus HOM05D003556 ORTHO05D003404 5.7e-13 78.6 176 31.2
C02p38810 Brassica napus HOM05D003556 ORTHO05D003404 5.7e-13 78.6 176 31.2
BolC2t09897H Brassica oleracea HOM05D003556 ORTHO05D003404 5.7e-13 78.6 176 31.2
BraA02t07448Z Brassica rapa HOM05D003556 ORTHO05D003404 5.7e-13 78.6 176 31.2
BraA05t20629Z Brassica rapa HOM05D003556 ORTHO05D003404 5.7e-13 78.6 177 27.7
BcaC03g16110 Brassica carinata HOM05D003556 ORTHO05D003404 7.4e-13 78.2 175 31.4
A05p17320 Brassica napus HOM05D003556 ORTHO05D003404 7.4e-13 78.2 177 27.7
Gohir.A08G042100 Gossypium hirsutum HOM05D003556 ORTHO05D003404 7.4e-13 78.2 144 32.6
C03p93200 Brassica napus HOM05D003556 ORTHO05D003404 9.7e-13 77.8 176 28.4
BolC3t21618H Brassica oleracea HOM05D003556 ORTHO05D003404 9.7e-13 77.8 176 28.4
Gohir.D08G051900 Gossypium hirsutum HOM05D003556 ORTHO05D003404 9.7e-13 77.8 144 31.9
Sed0018956 Sechium edule HOM05D003556 ORTHO05D003404 9.7e-13 77.8 166 32.5
ATR0693G401 Amborella trichopoda HOM05D001445 ORTHO05D001261 1.3e-12 77.4 150 36.0
Dinv40359 Davidia involucrata HOM05D003556 ORTHO05D003404 1.3e-12 77.4 171 31.6
BcaC04g24050 Brassica carinata HOM05D003556 ORTHO05D003404 1.7e-12 77.0 170 31.8
A09p01710 Brassica napus HOM05D003556 ORTHO05D003404 1.7e-12 77.0 170 31.8
C09p01780 Brassica napus HOM05D003556 ORTHO05D003404 1.7e-12 77.0 170 31.8
BolC9t53113H Brassica oleracea HOM05D003556 ORTHO05D003404 1.7e-12 77.0 170 31.8
BraA09t35826Z Brassica rapa HOM05D003556 ORTHO05D003404 1.7e-12 77.0 170 31.8
Gorai.004G052000 Gossypium raimondii HOM05D003556 ORTHO05D003404 1.7e-12 77.0 138 32.6
Sed0024461 Sechium edule HOM05D003556 ORTHO05D003404 1.7e-12 77.0 173 32.9
BcaB07g33190 Brassica carinata HOM05D003556 ORTHO05D003404 2.2e-12 76.6 165 27.3
Sc25g0000800 Simmondsia chinensis HOM05D003556 ORTHO05D003404 2.2e-12 76.6 188 28.2
Manes.09G173500 Manihot esculenta HOM05D003556 ORTHO05D003404 2.8e-12 76.3 148 31.8
BcaB05g23608 Brassica carinata HOM05D003556 ORTHO05D003404 3.7e-12 75.9 176 30.1
Cpa.g.sc151.17 Carica papaya HOM05D003556 ORTHO05D003404 4.8e-12 75.5 176 33.0
BcaB02g10800 Brassica carinata HOM05D003556 ORTHO05D003404 8.2e-12 74.7 176 27.3
MBI18_g25093_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 1.4e-11 73.9 170 32.4
Actinidia19773 Actinidia chinensis HOM05D003556 ORTHO05D003404 3.1e-11 72.8 149 34.9
Rhsim05G0137100 Rhododendron simsii HOM05D003556 ORTHO05D003404 5.3e-11 72.0 147 32.0
AUR62008689 Chenopodium quinoa HOM05D003556 ORTHO05D003404 1.6e-10 70.5 161 29.2
AT4G02250 Arabidopsis thaliana HOM05D003556 ORTHO05D003404 3.5e-10 69.3 130 33.1
EL10Ac7g18176 Beta vulgaris HOM05D003556 ORTHO05D003404 3.5e-10 69.3 153 30.1
CiPaw.07G023500 Carya illinoinensis HOM05D003556 ORTHO05D003404 3.5e-10 69.3 167 31.1
Cfa014665 Carpinus fangiana HOM05D003556 ORTHO05D003404 4.5e-10 68.9 156 30.8
AUR62025555 Chenopodium quinoa HOM05D003556 ORTHO05D003404 5.9e-10 68.6 148 29.7
Cfa006653 Carpinus fangiana HOM05D003556 ORTHO05D003404 1.0e-09 67.8 176 31.8
Potri.006G134900 Populus trichocarpa HOM05D004113 ORTHO05D003404 1.7e-09 67.0 185 29.2
Nn1g02148 Nelumbo nucifera HOM05D001445 ORTHO05D001261 2.2e-09 66.6 183 30.6
Eucgr.K03504 Eucalyptus grandis HOM05D003556 ORTHO05D003404 3.2e-08 62.8 156 30.8
Prupe.4G001200 Prunus persica HOM05D008403 ORTHO05D010317 5.5e-08 62.0 160 33.1
PSO782G0985 Papaver somniferum HOM05D001445 ORTHO05D001261 2.1e-07 60.1 176 25.6
vmacro07979 Vaccinium macrocarpon HOM05D003146 ORTHO05D001819 2.7e-07 59.7 154 33.1
CANSAT54G0162 Cannabis sativa HOM05D003556 ORTHO05D003404 8.0e-07 58.2 146 28.8
QL03p019550 Quercus lobata HOM05D003556 ORTHO05D003404 1.0e-06 57.8 171 26.9
HPP92_014651 Vanilla planifolia HOM05D001445 ORTHO05D001261 1.0e-06 57.8 187 27.8
Aqoxy7G04181 Aquilegia oxysepala HOM05D001445 ORTHO05D003404 1.4e-06 57.4 153 28.8
DCAR_002850 Daucus carota HOM05D003556 ORTHO05D003404 1.4e-06 57.4 160 27.5
ATR1149G037 Amborella trichopoda HOM05D003556 ORTHO05D003404 1.8e-06 57.0 144 30.6
Thecc.03G235400 Theobroma cacao HOM05D001445 ORTHO05D001261 1.8e-06 57.0 169 24.9
Sabra08G0077500 Salix brachista HOM05D001578 ORTHO05D001207 3.0e-06 56.2 110 34.5
Ciclev10006032m.g Citrus clementina HOM05D001578 ORTHO05D001207 4.0e-06 55.8 152 30.9
Medtr4g122740 Medicago truncatula HOM05D001578 ORTHO05D001207 4.0e-06 55.8 158 29.1
Potri.008G013400 Populus trichocarpa HOM05D008403 ORTHO05D010317 8.8e-06 54.7 171 33.3


User provided reference genes

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