Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 2.6e-253 878.2 453 100.0
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 3.1e-238 828.2 453 94.7
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 1.9e-219 765.8 453 86.3
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 4.7e-218 761.1 453 85.9
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 2.3e-217 758.8 453 85.4
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 4.9e-215 751.1 453 85.0
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 9.2e-214 746.9 455 84.6
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 2.0e-213 745.7 453 85.4
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 1.3e-212 743.0 455 84.4
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 3.0e-209 731.9 452 82.5
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 1.4e-198 696.4 403 88.3
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 2.2e-183 646.0 437 75.3
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 4.6e-181 638.3 454 73.8
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 1.9e-179 632.9 429 74.4
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 1.2e-178 630.2 438 71.9
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 4.7e-178 628.2 441 73.5
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 1.8e-177 626.3 439 72.9
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 6.9e-177 624.4 443 71.6
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 1.5e-176 623.2 428 74.3
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 2.6e-176 622.5 440 72.0
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 7.6e-176 620.9 420 75.5
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 9.9e-176 620.5 443 70.2
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 9.9e-176 620.5 437 72.3
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.7e-175 619.8 413 75.5
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 2.2e-175 619.4 420 73.3
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 2.2e-175 619.4 443 70.7
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 2.2e-175 619.4 428 73.8
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 2.9e-175 619.0 431 70.8
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 6.4e-175 617.8 441 71.9
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 1.1e-174 617.1 420 73.8
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.1e-174 617.1 416 74.8
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 1.1e-174 617.1 434 72.4
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 4.2e-174 615.1 434 71.0
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 5.4e-174 614.8 419 73.5
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 9.3e-174 614.0 436 71.1
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 9.3e-174 614.0 418 73.4
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 2.1e-173 612.8 441 70.1
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 4.6e-173 611.7 435 72.9
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 7.8e-173 610.9 420 73.8
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 7.8e-173 610.9 419 72.6
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 3.9e-172 608.6 436 70.4
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 7.3e-171 604.4 407 74.9
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 9.6e-171 604.0 416 72.8
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 1.3e-170 603.6 408 74.8
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 2.1e-170 602.8 408 72.5
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 3.6e-170 602.1 440 70.9
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 1.4e-169 600.1 459 67.8
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 1.4e-169 600.1 440 69.3
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 6.9e-169 597.8 419 72.1
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 2.0e-168 596.3 412 71.1
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 1.3e-167 593.6 412 74.0
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 1.7e-167 593.2 440 67.7
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 2.9e-167 592.4 412 70.6
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 4.9e-167 591.7 419 71.8
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 4.9e-167 591.7 419 71.6
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 6.4e-167 591.3 425 70.1
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.9e-166 589.7 419 71.4
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 3.2e-166 589.0 440 67.3
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 3.2e-166 589.0 440 68.6
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 7.1e-166 587.8 430 70.5
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 9.3e-166 587.4 421 71.7
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.6e-165 586.6 440 68.9
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 1.3e-164 583.6 414 72.7
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 1.8e-164 583.2 430 67.0
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 1.8e-164 583.2 391 72.9
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 3.3e-163 578.9 422 71.1
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 3.3e-163 578.9 415 71.1
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 5.6e-163 578.2 404 73.0
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 5.6e-163 578.2 441 69.8
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 6.2e-162 574.7 445 67.4
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 6.2e-162 574.7 431 68.0
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 8.1e-162 574.3 427 68.9
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 4.0e-161 572.0 409 70.2
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 1.2e-160 570.5 540 58.5
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 5.8e-160 568.2 410 69.8
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 6.4e-159 564.7 448 66.7
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 1.4e-158 563.5 417 70.0
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 1.4e-158 563.5 465 62.8
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 2.4e-158 562.8 452 64.4
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 2.4e-158 562.8 417 69.8
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 2.1e-157 559.7 405 70.6
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 4.6e-157 558.5 431 67.7
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 1.6e-154 550.1 435 66.7
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 4.5e-152 542.0 402 68.4
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 7.6e-152 541.2 390 68.5
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 2.2e-151 539.7 441 66.0
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 2.2e-151 539.7 441 66.0
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 7.9e-149 531.2 409 66.5
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 1.8e-148 530.0 392 71.2
QL12p027136 Quercus lobata HOM05D001496 ORTHO05D007453 5.3e-145 518.5 370 71.9
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 4.2e-142 508.8 417 62.4
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 7.4e-139 498.0 435 60.5
TAR633G2480 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.7e-138 496.9 371 70.4
FvH4_2g25370 Fragaria vesca HOM05D001496 ORTHO05D007453 1.0e-132 477.6 329 73.6
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 1.2e-128 464.2 399 60.4
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 3.8e-127 459.1 397 59.2
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 8.5e-127 458.0 419 58.9
CARHR143130 Cardamine hirsuta HOM05D001496 ORTHO05D007453 4.7e-125 452.2 326 71.5
BraA05t19016Z Brassica rapa HOM05D001496 ORTHO05D007453 8.0e-117 424.9 345 65.5
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 8.0e-117 424.9 432 56.5
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 5.7e-107 392.1 395 54.9
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 7.0e-105 385.2 298 64.8
Ah.16g101380 Amaranthus hybridus HOM05D001496 ORTHO05D007453 1.6e-104 384.0 369 61.5
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 5.4e-97 359.0 254 73.2
FAN20G0671 Fragaria x ananassa HOM05D001496 ORTHO05D007453 8.6e-95 351.7 337 59.6
MCO05G420 Micromonas commoda HOM05D001496 ORTHO05D007453 1.2e-93 347.8 395 48.9
FAN15G0073 Fragaria x ananassa HOM05D001496 ORTHO05D007453 3.6e-85 319.7 204 80.9
MD03G1285200 Malus domestica HOM05D001496 ORTHO05D007453 2.4e-81 307.0 229 70.3
MD03G1285100 Malus domestica HOM05D001496 ORTHO05D007453 1.0e-79 301.6 215 67.4
PRCOL_00006487 Prasinoderma coloniale HOM05D001496 ORTHO05D007453 4.0e-76 289.7 392 44.9
Haze_26252 Corylus avellana HOM05D001496 ORTHO05D007453 1.0e-63 248.4 393 39.9
Gohir.A05G239300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 5.8e-51 206.1 126 77.8
COL.COLO4_15168 Corchorus olitorius HOM05D001496 ORTHO05D007453 1.5e-46 191.4 120 75.0
Gohir.A01G111300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 4.0e-44 183.3 110 79.1
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 7.6e-43 179.1 112 75.9
Gohir.A02G071100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 9.9e-43 178.7 110 77.3
Gohir.A12G153600 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.9e-41 174.5 110 75.5
Os01g0172000 Oryza sativa ssp. japonica HOM05D001496 ORTHO05D007453 2.4e-36 157.5 124 64.5
Gohir.A07G160700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.4e-33 148.3 104 75.0
BraA03t11820Z Brassica rapa HOM05D001496 ORTHO05D007453 9.3e-33 145.6 89 75.3
A03p26050 Brassica napus HOM05D000073 ORTHO05D000033 3.5e-32 143.7 106 67.0
FAN27G2092 Fragaria x ananassa HOM05D001496 ORTHO05D007453 6.1e-24 116.3 94 59.6
MBI19_g29447_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 8.8e-23 112.5 68 75.0
MBI14_g09685_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 6.3e-21 106.3 68 73.5
BolC3t15455H Brassica oleracea HOM05D001496 ORTHO05D007453 1.4e-20 105.1 125 52.8
SEGI_31251 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 1.4e-20 105.1 78 59.0
SEGI_39661 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 6.9e-20 102.8 70 64.3
C03p31050 Brassica napus HOM05D001496 ORTHO05D007453 1.0e-18 99.0 127 51.2
QL02p058842 Quercus lobata HOM05D001496 ORTHO05D000125 3.2e-17 94.0 49 79.6
Actinidia02729 Actinidia chinensis HOM05D001496 ORTHO05D007453 2.3e-15 87.8 244 37.3
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 6.3e-13 79.7 51 70.6
HanXRQChr05g0138141 Helianthus annuus HOM05D001496 ORTHO05D007453 3.1e-12 77.4 43 76.7
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 2.9e-10 70.9 41 78.0


User provided reference genes

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