Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 7.3e-130 467.2 237 100.0
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 2.2e-118 429.1 237 90.7
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 1.3e-115 419.9 235 89.8
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 6.7e-115 417.5 234 88.0
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 3.8e-110 401.7 233 85.4
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 4.2e-109 398.3 232 85.8
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 7.1e-109 397.5 233 85.4
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 9.3e-109 397.1 233 85.4
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 1.3e-107 393.3 232 84.9
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 2.3e-107 392.5 232 84.9
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 1.1e-106 390.2 229 84.3
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 5.6e-106 387.9 230 83.9
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 4.2e-101 371.7 230 79.6
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 7.1e-101 370.9 231 79.2
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 2.8e-97 359.0 227 77.5
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 6.3e-97 357.8 233 73.4
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 2.4e-96 355.9 235 72.8
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 3.1e-96 355.5 227 77.5
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 4.1e-96 355.1 235 74.0
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 4.1e-96 355.1 227 75.3
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 9.0e-96 354.0 227 75.8
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 1.5e-95 353.2 235 73.6
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 1.5e-95 353.2 235 72.8
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 7.7e-95 350.9 227 74.0
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 1.7e-94 349.7 227 75.3
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 2.2e-94 349.4 217 77.0
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 2.9e-94 349.0 227 75.3
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 3.8e-94 348.6 227 75.8
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 5.0e-94 348.2 227 73.6
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 8.5e-94 347.4 228 73.7
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.9e-93 346.3 235 71.1
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 4.2e-93 345.1 228 73.2
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 5.5e-93 344.7 227 74.4
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 1.2e-92 343.6 228 74.1
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 1.2e-92 343.6 227 74.0
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.2e-92 343.6 228 72.4
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 1.2e-92 343.6 222 75.7
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.6e-92 343.2 227 74.9
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 2.1e-92 342.8 231 71.0
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 2.1e-92 342.8 224 75.0
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.1e-92 342.8 224 75.0
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 2.7e-92 342.4 215 75.8
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 4.6e-92 341.7 231 71.0
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 7.9e-92 340.9 235 68.9
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.0e-91 340.5 235 70.2
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.4e-91 340.1 228 72.8
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 1.8e-91 339.7 223 71.7
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.8e-91 339.7 232 71.1
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 3.0e-91 339.0 227 71.8
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 3.9e-91 338.6 228 72.8
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 3.9e-91 338.6 227 72.7
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 5.1e-91 338.2 223 71.7
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 6.7e-91 337.8 235 68.9
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 6.7e-91 337.8 228 71.5
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 6.7e-91 337.8 230 70.4
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 1.5e-90 336.7 230 71.7
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.5e-90 336.7 228 71.1
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 2.0e-90 336.3 227 72.2
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 2.0e-90 336.3 227 73.1
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 3.3e-90 335.5 228 71.1
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 4.3e-90 335.1 223 71.3
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 4.3e-90 335.1 236 72.9
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.4e-90 334.3 235 68.9
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 7.4e-90 334.3 228 71.1
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 4.8e-89 331.6 224 71.9
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 4.8e-89 331.6 228 71.1
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 8.2e-89 330.9 232 69.8
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 1.1e-88 330.5 222 72.1
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 1.1e-88 330.5 231 69.7
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 1.4e-88 330.1 223 70.4
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 1.4e-88 330.1 227 69.2
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 2.4e-88 329.3 233 73.8
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 2.4e-88 329.3 222 72.5
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 3.1e-88 328.9 222 72.1
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 3.1e-88 328.9 215 74.9
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 3.1e-88 328.9 230 72.2
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 4.1e-88 328.6 222 73.0
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 4.1e-88 328.6 222 71.6
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 5.3e-88 328.2 222 72.1
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 6.9e-88 327.8 227 70.9
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 6.9e-88 327.8 228 71.1
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 9.1e-88 327.4 224 71.9
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 1.2e-87 327.0 236 71.2
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 1.5e-87 326.6 222 71.6
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 2.6e-87 325.9 222 71.6
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 4.5e-87 325.1 227 70.0
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 5.9e-87 324.7 222 71.2
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 5.9e-87 324.7 229 70.7
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 7.7e-87 324.3 222 71.6
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 7.7e-87 324.3 219 72.1
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 1.3e-86 323.6 227 69.6
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 1.7e-86 323.2 231 68.8
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.7e-86 323.2 221 70.6
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 2.2e-86 322.8 227 68.7
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.2e-86 322.8 231 69.7
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 3.8e-86 322.0 223 71.3
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.8e-86 322.0 202 75.7
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 5.0e-86 321.6 227 70.0
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 8.5e-86 320.9 222 71.6
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 8.5e-86 320.9 268 62.7
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 2.5e-85 319.3 232 68.1
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 2.5e-85 319.3 229 70.3
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 4.2e-85 318.5 217 72.8
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 9.4e-85 317.4 227 66.1
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 2.1e-84 316.2 227 68.7
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 1.0e-83 313.9 225 68.0
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 3.0e-83 312.4 215 69.8
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.0e-83 312.4 229 66.8
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 5.1e-83 311.6 229 66.8
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 8.8e-83 310.8 223 67.7
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.1e-82 310.5 229 66.4
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 2.0e-82 309.7 227 65.6
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 2.6e-82 309.3 229 65.9
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.8e-81 305.1 235 63.8
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 6.3e-81 304.7 216 68.5
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.4e-80 303.5 313 51.4
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 9.1e-80 300.8 195 76.9
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-79 300.4 237 62.0
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 2.6e-79 299.3 204 72.1
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 1.7e-78 296.6 224 66.1
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 2.9e-78 295.8 225 64.9
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 3.6e-76 288.9 228 62.3
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 8.0e-76 287.7 227 63.0
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 2.2e-73 279.6 208 63.9
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 2.8e-73 279.3 188 72.9
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.1e-69 267.3 181 71.8
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.9e-69 266.5 221 60.2
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 4.2e-69 265.4 195 66.7
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 4.4e-66 255.4 232 58.6
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 7.7e-63 244.6 148 77.0
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 2.9e-62 242.7 224 56.7
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 5.5e-61 238.4 182 65.4
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 8.0e-60 234.6 213 58.7
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 4.0e-59 232.3 216 54.2
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 9.8e-58 227.6 144 75.0
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 2.2e-57 226.5 218 54.1
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 2.8e-57 226.1 133 80.5
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 1.4e-56 223.8 226 53.1
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.2e-53 211.5 124 79.8
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 3.2e-48 196.1 138 70.3
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 7.8e-47 191.4 136 67.6
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 1.0e-46 191.0 147 66.0
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 1.0e-46 191.0 142 69.7
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 4.3e-45 185.7 144 63.9
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 1.8e-43 180.3 142 61.3
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 2.9e-41 172.9 132 65.2
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 3.7e-41 172.6 119 66.4
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 4.9e-41 172.2 134 64.2
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 2.0e-39 166.8 217 42.9
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 4.6e-39 165.6 133 63.9
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.1e-36 156.8 176 47.2
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 2.1e-36 156.8 124 67.7
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 3.6e-36 156.0 126 62.7
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 1.1e-35 154.5 191 47.6
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.2e-34 151.0 91 81.3
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 2.9e-33 146.4 85 80.0
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 2.4e-32 143.3 106 68.9
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 2.4e-32 143.3 85 83.5
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 9.2e-32 141.4 109 66.1
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 1.0e-30 137.9 102 68.6
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 9.5e-29 131.3 93 72.0
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 4.0e-27 125.9 81 76.5
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 6.8e-27 125.2 85 70.6
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 5.8e-26 122.1 85 67.1
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 2.2e-25 120.2 95 65.3
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 4.9e-25 119.0 69 82.6
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 2.4e-24 116.7 77 72.7
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 1.2e-23 114.4 99 59.6
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.5e-23 112.8 85 63.5
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 7.8e-23 111.7 79 65.8
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 3.9e-22 109.4 85 64.7
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 9.6e-21 104.8 125 46.4
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.8e-19 100.5 104 56.7
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 1.4e-16 90.9 92 50.0
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 3.2e-16 89.7 61 72.1
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 3.5e-15 86.3 74 59.5
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 3.5e-15 86.3 63 71.4
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 1.3e-14 84.3 187 31.0
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 6.6e-14 82.0 220 30.5
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 3.3e-13 79.7 60 65.0
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 1.7e-09 67.4 67 46.3
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 2.2e-09 67.0 49 63.3


User provided reference genes

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