Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 1.0e-232 809.7 407 100.0
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 3.2e-226 788.1 407 97.3
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 1.4e-213 746.1 407 90.7
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 2.2e-211 738.8 407 89.2
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 2.2e-198 695.7 406 86.5
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 2.4e-189 665.6 404 81.2
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 1.2e-188 663.3 404 81.7
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 2.9e-187 658.7 404 80.2
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 6.8e-184 647.5 409 79.2
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 7.5e-183 644.0 407 77.9
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 9.8e-183 643.7 407 78.4
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 1.7e-182 642.9 407 78.1
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 2.2e-182 642.5 407 77.6
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 1.1e-181 640.2 408 78.2
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 1.4e-181 639.8 407 77.4
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 9.2e-181 637.1 407 77.1
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 9.2e-181 637.1 407 77.1
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 1.0e-179 633.6 407 76.4
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 5.0e-179 631.3 407 76.9
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 1.6e-177 626.3 407 75.9
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 6.2e-177 624.4 407 73.7
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 1.8e-176 622.9 405 75.1
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 1.8e-176 622.9 405 75.1
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 2.3e-176 622.5 405 74.8
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 4.0e-176 621.7 407 74.9
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.2e-175 620.2 406 75.4
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.6e-175 619.0 405 75.6
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 4.4e-175 618.2 397 76.8
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 5.8e-175 617.8 397 76.6
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 1.3e-174 616.7 405 74.1
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.3e-174 616.7 407 73.0
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.7e-174 616.3 403 76.2
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 3.7e-174 615.1 407 72.5
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 4.9e-174 614.8 410 72.2
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 4.9e-174 614.8 405 73.8
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 4.9e-174 614.8 408 73.0
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.1e-173 613.6 405 73.8
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.1e-173 613.6 407 73.2
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 1.6e-172 609.8 403 73.7
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 2.1e-172 609.4 407 74.0
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 4.6e-172 608.2 407 74.2
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 6.0e-172 607.8 403 73.7
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.7e-171 606.3 407 70.8
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 3.0e-171 605.5 407 70.8
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 5.0e-171 604.7 402 72.6
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 1.1e-170 603.6 407 72.0
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 2.5e-170 602.4 402 72.4
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 5.6e-170 601.3 407 71.5
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 5.6e-170 601.3 407 73.7
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 7.3e-170 600.9 407 72.2
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 9.5e-170 600.5 407 71.0
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.8e-169 599.0 403 74.2
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 6.2e-169 597.8 410 70.7
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 6.4e-166 587.8 403 71.2
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 1.6e-164 583.2 407 71.0
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 3.5e-164 582.0 404 70.8
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 7.8e-164 580.9 409 70.7
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 1.3e-163 580.1 407 71.0
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 2.3e-163 579.3 402 70.6
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 3.0e-163 578.9 405 69.6
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 6.6e-163 577.8 407 69.8
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 6.6e-163 577.8 406 69.7
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 8.6e-163 577.4 408 69.1
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 1.9e-162 576.2 414 68.8
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 7.3e-162 574.3 402 68.9
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 7.3e-162 574.3 406 68.5
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 9.5e-162 573.9 400 70.0
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 1.2e-161 573.5 407 68.3
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 1.6e-161 573.2 401 68.1
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 8.1e-161 570.9 411 68.6
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.1e-160 570.5 402 68.7
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.8e-160 569.7 408 68.4
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 1.8e-160 569.7 407 69.0
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 1.8e-160 569.7 407 69.0
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 2.4e-160 569.3 411 68.6
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 2.4e-160 569.3 408 67.4
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 4.0e-160 568.5 411 68.4
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 5.2e-160 568.2 406 68.7
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.2e-159 567.0 402 67.9
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 5.8e-159 564.7 404 69.8
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 5.8e-159 564.7 410 67.3
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 7.6e-159 564.3 411 67.4
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 7.6e-159 564.3 411 67.4
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 7.6e-159 564.3 411 67.4
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 7.6e-159 564.3 411 67.6
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 1.3e-158 563.5 411 68.4
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 1.1e-157 560.5 432 65.0
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 3.2e-157 558.9 408 67.6
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 1.2e-156 557.0 405 67.2
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 1.6e-156 556.6 401 67.8
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 1.6e-156 556.6 403 66.7
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 4.6e-156 555.1 402 68.2
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 2.3e-155 552.7 402 66.2
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 5.1e-155 551.6 403 68.2
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 8.7e-155 550.8 397 66.2
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 1.5e-154 550.1 397 66.2
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 1.9e-154 549.7 402 66.9
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 9.6e-154 547.4 403 65.8
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 1.6e-153 546.6 403 66.0
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 2.1e-153 546.2 398 66.6
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 2.8e-153 545.8 423 64.8
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 3.6e-153 545.4 412 64.6
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 4.4e-151 538.5 407 66.1
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 7.6e-151 537.7 410 64.4
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 7.6e-151 537.7 360 73.1
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 6.4e-150 534.6 364 70.9
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 3.2e-149 532.3 403 66.3
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 9.3e-149 530.8 402 66.2
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 1.3e-147 526.9 408 64.0
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 6.6e-147 524.6 488 58.2
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 3.8e-142 508.8 402 63.7
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.6e-140 503.4 408 61.5
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 3.5e-140 502.3 409 61.1
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 1.8e-139 500.0 408 62.5
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 3.0e-139 499.2 398 60.8
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 3.9e-139 498.8 398 61.1
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 4.3e-138 495.4 403 59.3
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 6.2e-137 491.5 313 77.0
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 3.4e-135 485.7 371 64.4
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 5.1e-131 471.9 410 58.3
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 5.6e-130 468.4 272 83.1
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 9.0e-128 461.1 404 58.2
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 3.0e-123 446.0 415 54.5
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 2.4e-120 436.4 315 67.6
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 3.8e-118 429.1 376 57.4
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 7.9e-108 394.8 312 62.2
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 1.2e-100 370.9 266 68.8
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 1.0e-99 367.9 415 47.7
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 1.0e-99 367.9 272 65.8
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 1.5e-98 364.0 417 45.3
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 2.9e-94 349.7 250 74.8
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 9.4e-93 344.7 424 46.5
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 6.1e-92 342.0 412 50.7
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 4.4e-90 335.9 409 47.2
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 2.3e-75 287.0 443 40.0
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 4.9e-65 252.7 173 72.8
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 4.9e-65 252.7 170 71.8
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 1.9e-64 250.8 181 68.0
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 4.1e-64 249.6 161 75.8
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 6.6e-62 242.3 212 58.0
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 2.2e-57 227.3 178 61.8
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 9.2e-56 221.9 134 80.6
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 6.8e-51 205.7 190 54.7
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 2.0e-50 204.1 111 87.4
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 8.3e-49 198.7 340 36.8
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 7.1e-48 195.7 148 62.8
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 2.4e-32 144.1 93 72.0
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 6.6e-30 136.0 101 64.4
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 8.7e-22 109.0 97 62.9
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 9.0e-19 99.0 270 28.5
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 3.4e-18 97.1 70 67.1
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 1.9e-13 81.3 84 58.3
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 4.5e-10 70.1 57 63.2


User provided reference genes

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