Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 7.2e-189 663.7 320 100.0
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 1.4e-184 649.4 320 97.5
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 1.6e-183 646.0 320 96.9
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 3.0e-179 631.7 320 94.1
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 1.1e-176 623.2 320 93.1
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 5.4e-176 620.9 320 92.2
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 5.7e-170 600.9 319 89.0
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 1.7e-169 599.4 304 93.8
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 1.0e-166 590.1 319 87.1
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 1.9e-165 585.9 319 85.6
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 1.6e-164 582.8 315 86.0
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 1.4e-163 579.7 315 87.0
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 2.3e-163 578.9 319 85.9
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.0e-163 578.6 315 86.7
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 4.0e-163 578.2 319 85.6
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 5.2e-163 577.8 315 86.0
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 6.8e-163 577.4 315 86.7
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 9.8e-162 573.5 306 87.9
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 1.7e-161 572.8 320 83.8
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 2.9e-161 572.0 319 84.0
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 2.9e-161 572.0 315 85.4
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 3.7e-161 571.6 319 84.3
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 4.9e-161 571.2 318 84.6
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 4.9e-161 571.2 312 85.6
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 8.3e-161 570.5 319 85.0
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.8e-160 569.3 319 85.0
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 2.4e-160 568.9 312 86.2
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 3.2e-160 568.5 315 85.7
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 3.2e-160 568.5 319 82.4
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 7.0e-160 567.4 315 83.5
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 7.0e-160 567.4 319 83.1
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 9.2e-160 567.0 316 83.2
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 9.2e-160 567.0 315 85.4
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 4.6e-159 564.7 318 83.3
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 5.9e-159 564.3 319 81.5
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 7.8e-159 563.9 303 87.8
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 1.3e-158 563.1 315 84.8
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 1.7e-158 562.8 315 83.5
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 2.3e-158 562.4 316 83.5
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 8.6e-158 560.5 315 83.2
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 1.9e-157 559.3 312 84.9
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 2.5e-157 558.9 315 83.2
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 7.3e-157 557.4 315 83.2
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 1.2e-156 556.6 315 81.6
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 1.6e-156 556.2 315 85.7
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 2.1e-156 555.8 315 85.1
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 3.6e-156 555.1 313 82.7
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 8.0e-156 553.9 317 83.0
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 8.0e-156 553.9 300 87.0
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 1.0e-155 553.5 316 81.6
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 1.4e-155 553.1 315 82.2
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 2.3e-155 552.4 317 82.0
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 4.0e-155 551.6 299 86.6
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 6.8e-155 550.8 314 81.5
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 1.2e-154 550.1 315 81.6
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 1.2e-154 550.1 314 83.8
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 7.5e-154 547.4 314 83.1
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 7.5e-154 547.4 314 83.1
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 7.5e-154 547.4 315 81.6
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 1.7e-153 546.2 303 84.5
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 2.2e-153 545.8 304 85.9
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 3.7e-153 545.0 303 85.1
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 4.9e-153 544.7 315 81.3
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 1.1e-152 543.5 315 81.9
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 1.4e-152 543.1 313 82.7
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 2.4e-152 542.3 315 80.3
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 3.2e-152 542.0 325 77.5
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.7e-151 538.9 303 83.8
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 3.5e-151 538.5 308 85.1
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 4.6e-151 538.1 311 79.4
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 2.3e-150 535.8 369 71.5
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 5.0e-150 534.6 299 83.6
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 6.6e-150 534.3 314 79.3
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 1.6e-148 529.6 308 79.9
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 1.1e-147 526.9 300 81.7
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 3.1e-147 525.4 319 78.1
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 8.9e-147 523.9 302 80.5
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.7e-145 519.6 317 79.5
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 6.6e-142 507.7 321 76.0
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 1.6e-140 503.1 291 81.1
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 3.6e-140 501.9 304 77.0
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 8.1e-140 500.7 295 78.6
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 1.1e-139 500.4 297 79.5
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 1.8e-139 499.6 285 85.6
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 5.2e-139 498.0 284 82.4
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 2.9e-137 492.3 270 86.7
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 8.4e-137 490.7 313 72.8
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 9.2e-136 487.3 280 83.6
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 6.0e-135 484.6 314 70.4
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 3.9e-134 481.9 280 83.2
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.6e-132 476.5 280 82.9
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 1.4e-131 473.4 268 81.3
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 9.9e-130 467.2 316 72.2
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 2.2e-129 466.1 314 67.8
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 4.9e-129 464.9 247 85.4
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 1.1e-125 453.8 308 68.2
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 2.6e-122 442.6 303 71.0
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 3.2e-120 435.6 254 79.9
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 1.8e-115 419.9 301 70.1
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 4.0e-115 418.7 272 73.5
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 2.9e-113 412.5 258 77.9
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 8.4e-113 411.0 287 65.5
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 1.5e-109 400.2 237 79.7
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 2.1e-108 396.4 317 59.3
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 4.5e-106 388.7 218 83.9
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 1.9e-101 373.2 315 58.1
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 3.2e-96 355.9 209 79.4
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 2.7e-87 326.2 306 52.6
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 7.9e-87 324.7 326 50.9
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 2.5e-80 303.1 204 68.6
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 9.7e-77 291.2 170 82.4
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.4e-75 287.3 184 71.7
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 3.1e-75 286.2 288 47.6
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 7.7e-74 281.6 299 49.2
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 2.8e-68 263.1 165 72.7
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 5.3e-67 258.8 170 74.1
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 1.1e-64 251.1 145 80.0
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 2.4e-59 233.4 189 60.3
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 1.6e-58 230.7 120 88.3
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.6e-58 230.7 129 82.9
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 5.2e-54 215.7 182 61.0
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 6.8e-54 215.3 118 81.4
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 2.4e-51 206.8 135 69.6
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 1.8e-46 190.7 104 85.6
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 2.3e-46 190.3 108 81.5
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 2.9e-44 183.3 172 59.3
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 4.9e-44 182.6 130 67.7
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 4.0e-38 162.9 118 64.4
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 2.2e-36 157.1 105 68.6
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 3.9e-33 146.4 313 34.5
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 6.6e-33 145.6 95 78.9
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 8.6e-33 145.2 108 65.7
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 2.3e-30 137.1 324 33.3
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 1.1e-27 128.3 71 88.7
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 4.6e-26 122.9 120 55.8
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 6.2e-23 112.5 301 30.2
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 4.1e-19 99.8 95 52.6
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 3.5e-18 96.7 69 66.7
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 2.3e-17 94.0 69 65.2
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 1.5e-13 81.3 40 92.5
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 1.5e-13 81.3 40 92.5
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 4.4e-13 79.7 40 90.0
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 4.9e-12 76.3 51 62.7
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 6.4e-12 75.9 294 27.6
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 4.2e-11 73.2 165 27.9
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 4.2e-11 73.2 53 64.2
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 1.7e-09 67.8 310 26.8
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 2.3e-09 67.4 256 28.5
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 6.6e-09 65.9 293 27.6
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 6.6e-09 65.9 283 24.4
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 8.7e-09 65.5 291 25.4
FvH4_2g19461 Fragaria vesca HOM05D005131 ORTHO05D006645 8.7e-09 65.5 66 53.0
CAN.G1767.1 Capsicum annuum HOM05D000162 ORTHO05D000090 3.3e-08 63.5 83 42.2
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 9.6e-08 62.0 240 26.2
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 8.1e-07 58.9 215 27.0
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 1.1e-06 58.5 218 28.9
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.4e-06 58.2 209 26.8
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 1.4e-06 58.2 123 35.0
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 3.1e-06 57.0 209 26.8
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.0e-06 56.6 209 27.3
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 5.3e-06 56.2 208 26.0
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.0e-06 55.5 208 26.0
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.0e-06 55.5 209 26.8


User provided reference genes

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