Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G194908 Glycine max HOM05D004768 ORTHO05D005812 3.4e-52 208.0 100 100.0
arahy.Tifrunner.gnm1.ann1.F6QZS0 Arachis hypogaea HOM05D004768 ORTHO05D005812 1.8e-13 79.3 36 97.2
arahy.Tifrunner.gnm1.ann1.UHNL6N Arachis hypogaea HOM05D004768 ORTHO05D005812 1.8e-13 79.3 36 97.2
Phvul.001G190000 Phaseolus vulgaris HOM05D004768 ORTHO05D005812 2.4e-13 79.0 41 90.2
VMungo1383G3473 Vigna mungo HOM05D004768 ORTHO05D005812 5.3e-13 77.8 41 87.8
TPR.G19532 Trifolium pratense HOM05D004768 ORTHO05D005812 1.2e-12 76.6 43 81.4
Lj1g0007409 Lotus japonicus HOM05D004768 ORTHO05D005812 2.0e-12 75.9 43 79.1
Actinidia05433 Actinidia chinensis HOM05D004768 ORTHO05D005812 2.6e-12 75.5 39 87.2
Medtr7g104550 Medicago truncatula HOM05D004768 ORTHO05D005812 3.4e-12 75.1 41 85.4
Duzib128G0567 Durio zibethinus HOM05D004768 ORTHO05D005812 4.5e-12 74.7 37 86.5
CSS0047457 Camellia sinensis var. sinensis HOM05D004768 ORTHO05D005812 7.6e-12 73.9 36 86.1
Ca_09003_v3 Cicer arietinum L. HOM05D004768 ORTHO05D005812 7.6e-12 73.9 41 82.9
Glyma.03G195400 Glycine max HOM05D004768 ORTHO05D005812 7.6e-12 73.9 35 91.4
Aqoxy2G01203 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 1.0e-11 73.6 36 86.1
MSTRG.10364 Avicennia marina HOM05D004768 ORTHO05D005812 1.0e-11 73.6 35 91.4
Cc06_g05720 Coffea canephora HOM05D004768 ORTHO05D005812 1.0e-11 73.6 36 86.1
Oeu047201.1 Olea europaea HOM05D004768 ORTHO05D005812 1.0e-11 73.6 35 91.4
CANSAT78G2462 Cannabis sativa HOM05D004768 ORTHO05D005812 1.3e-11 73.2 35 88.6
Gohir.A01G206500 Gossypium hirsutum HOM05D004768 ORTHO05D005812 1.3e-11 73.2 35 88.6
Gohir.D01G195900 Gossypium hirsutum HOM05D004768 ORTHO05D005812 1.3e-11 73.2 35 88.6
Lalb_Chr20g0111731 Lupinus albus HOM05D004768 ORTHO05D005812 1.3e-11 73.2 41 85.4
MELO3C009471.2 Cucumis melo HOM05D004768 ORTHO05D005812 1.7e-11 72.8 37 83.8
DCAR_009162 Daucus carota HOM05D004768 ORTHO05D005812 1.7e-11 72.8 36 83.3
Lj2A136G54 Lonicera japonica HOM05D004768 ORTHO05D005812 1.7e-11 72.8 36 83.3
Atru.chr8.1546 Acer truncatum HOM05D004768 ORTHO05D005812 2.2e-11 72.4 35 88.6
ATR0776G063 Amborella trichopoda HOM05D004768 ORTHO05D005812 2.2e-11 72.4 39 82.1
Psat3g033480 Pisum sativum HOM05D004768 ORTHO05D005812 2.2e-11 72.4 41 82.9
QL07p038809 Quercus lobata HOM05D004768 ORTHO05D005812 2.2e-11 72.4 35 88.6
QL07p039071 Quercus lobata HOM05D004768 ORTHO05D005812 2.2e-11 72.4 35 88.6
Rhsim03G0075500 Rhododendron simsii HOM05D004768 ORTHO05D005812 2.2e-11 72.4 35 88.6
MSTRG.26639 Avicennia marina HOM05D004768 ORTHO05D005812 2.9e-11 72.0 35 85.7
Thecc.05G088700 Theobroma cacao HOM05D004768 ORTHO05D005812 2.9e-11 72.0 35 85.7
Cpa.g.sc5.22 Carica papaya HOM05D004768 ORTHO05D005812 3.8e-11 71.6 35 85.7
ClCG10G018990 Citrullus lanatus HOM05D004768 ORTHO05D005812 3.8e-11 71.6 36 86.1
CsaV3_3G037260 Cucumis sativus L. HOM05D004768 ORTHO05D005812 3.8e-11 71.6 36 86.1
HanXRQChr05g0133111 Helianthus annuus HOM05D004768 ORTHO05D005812 3.8e-11 71.6 35 85.7
Sed0006419 Sechium edule HOM05D004768 ORTHO05D005812 3.8e-11 71.6 36 86.1
Sc02g0000880 Simmondsia chinensis HOM05D004768 ORTHO05D005812 3.8e-11 71.6 41 75.6
EL10Ac4g08441 Beta vulgaris HOM05D004768 ORTHO05D005812 4.9e-11 71.2 41 73.2
EL10Ac4g08444 Beta vulgaris HOM05D004768 ORTHO05D005812 4.9e-11 71.2 41 73.2
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 4.9e-11 71.2 36 80.6
Potri.001G221000 Populus trichocarpa HOM05D004768 ORTHO05D005812 4.9e-11 71.2 34 88.2
Potri.001G221150 Populus trichocarpa HOM05D004768 ORTHO05D005812 4.9e-11 71.2 34 88.2
Sabra16G0131600 Salix brachista HOM05D004768 ORTHO05D000138 4.9e-11 71.2 34 88.2
Sed0028141 Sechium edule HOM05D004768 ORTHO05D005812 4.9e-11 71.2 36 83.3
SGA_v2.0_scaffold184G39961 Striga asiatica HOM05D004768 ORTHO05D005812 4.9e-11 71.2 35 85.7
vmacro07406 Vaccinium macrocarpon HOM05D004768 ORTHO05D005812 4.9e-11 71.2 35 85.7
COL.COLO4_29739 Corchorus olitorius HOM05D004768 ORTHO05D005812 6.5e-11 70.9 35 80.0
Migut.L01777 Erythranthe guttata HOM05D004768 ORTHO05D005812 6.5e-11 70.9 35 85.7
Eucgr.K02044 Eucalyptus grandis HOM05D004768 ORTHO05D005812 6.5e-11 70.9 34 88.2
Gorai.002G240100 Gossypium raimondii HOM05D004768 ORTHO05D005812 6.5e-11 70.9 35 85.7
CiPaw.09G013600 Carya illinoinensis HOM05D004768 ORTHO05D005812 8.4e-11 70.5 35 88.6
Hma1.2p1_0084F.1_g043770 Hydrangea macrophylla HOM05D004768 ORTHO05D005812 8.4e-11 70.5 36 80.6
Ciclev10012077m.g Citrus clementina HOM05D004768 ORTHO05D005812 1.1e-10 70.1 35 80.0
Haze_19607 Corylus avellana HOM05D004768 ORTHO05D005812 1.1e-10 70.1 35 85.7
FAN02G2744 Fragaria x ananassa HOM05D004768 ORTHO05D005812 1.1e-10 70.1 50 70.0
MD12G1035900 Malus domestica HOM05D004768 ORTHO05D005812 1.1e-10 70.1 40 80.0
MD14G1022600 Malus domestica HOM05D004768 ORTHO05D005812 1.1e-10 70.1 40 80.0
Nitab4.5_0003550g0050 Nicotiana tabacum HOM05D004768 ORTHO05D005812 1.1e-10 70.1 36 83.3
PSO384G2514 Papaver somniferum HOM05D004768 ORTHO05D005812 1.1e-10 70.1 41 80.5
Sopen09g029240 Solanum pennellii HOM05D004768 ORTHO05D005812 1.1e-10 70.1 36 83.3
GSVIVG01033839001 Vitis vinifera HOM05D004768 ORTHO05D005812 1.1e-10 70.1 35 82.9
Lsat_1_v5_gn_5_164801 Lactuca sativa HOM05D004768 ORTHO05D005812 1.4e-10 69.7 36 83.3
PSO339G5247 Papaver somniferum HOM05D004768 ORTHO05D005812 1.4e-10 69.7 41 80.5
Potri.002G212800 Populus trichocarpa HOM05D004768 ORTHO05D005812 1.4e-10 69.7 34 85.3
HanXRQChr01g0001951 Helianthus annuus HOM05D004768 ORTHO05D005812 1.9e-10 69.3 35 85.7
Prupe.7G110600 Prunus persica HOM05D004768 ORTHO05D005812 1.9e-10 69.3 40 77.5
SEGI_40271 Sequoiadendron giganteum HOM05D004768 ORTHO05D005812 1.9e-10 69.3 36 77.8
Solyc09g074400.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 1.9e-10 69.3 35 85.7
TWI74G0982 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 1.9e-10 69.3 34 85.3
TWI77G0792 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 1.9e-10 69.3 34 85.3
CiPaw.10G009400 Carya illinoinensis HOM05D004768 ORTHO05D005812 2.5e-10 68.9 35 85.7
CDE02G3328 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 2.5e-10 68.9 36 75.0
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 2.5e-10 68.9 36 80.6
SMO239G0020 Selaginella moellendorffii HOM05D004768 ORTHO05D005812 2.5e-10 68.9 75 50.7
PSO229G0127 Papaver somniferum HOM05D004768 ORTHO05D005812 3.2e-10 68.6 41 78.0
Peaxi162Scf00290g00062 Petunia axillaris HOM05D004768 ORTHO05D005812 3.2e-10 68.6 36 77.8
Glyma.10G117950 Glycine max HOM05D004768 ORTHO05D005812 4.2e-10 68.2 84 45.2
PGR142G0725 Punica granatum HOM05D004768 ORTHO05D005812 4.2e-10 68.2 35 77.1
CDE08G0455 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 5.5e-10 67.8 36 75.0
AUR62017616 Chenopodium quinoa HOM05D004768 ORTHO05D005812 5.5e-10 67.8 41 70.7
FvH4_6g18650 Fragaria vesca HOM05D004768 ORTHO05D005812 5.5e-10 67.8 50 68.0
FAN05G3800 Fragaria x ananassa HOM05D004768 ORTHO05D005812 5.5e-10 67.8 50 68.0
FAN05G5395 Fragaria x ananassa HOM05D004768 ORTHO05D005812 5.5e-10 67.8 50 68.0
FAN14G4330 Fragaria x ananassa HOM05D004768 ORTHO05D005812 5.5e-10 67.8 50 68.0
Sp4g05920 Schrenkiella parvula HOM05D004768 ORTHO05D005812 5.5e-10 67.8 35 82.9
THA.LOC104816391 Tarenaya hassleriana HOM05D004768 ORTHO05D005812 5.5e-10 67.8 35 80.0
Carub.0007s0749 Capsella rubella HOM05D004768 ORTHO05D005812 7.1e-10 67.4 35 80.0
CARHR241000 Cardamine hirsuta HOM05D004768 ORTHO05D005812 7.1e-10 67.4 35 77.1
Manes.08G025000 Manihot esculenta HOM05D004768 ORTHO05D005812 7.1e-10 67.4 34 85.3
A08p05150 Brassica napus HOM05D004768 ORTHO05D005812 9.3e-10 67.0 42 71.4
CARHR262780 Cardamine hirsuta HOM05D004768 ORTHO05D005812 9.3e-10 67.0 37 75.7
RcHm_v2.0_Chr3g0473611 Rosa chinensis HOM05D004768 ORTHO05D005812 1.6e-09 66.2 50 66.0
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 2.1e-09 65.9 35 80.0
FAN09G1393 Fragaria x ananassa HOM05D004768 ORTHO05D005812 2.7e-09 65.5 50 66.0
SalBow7G2666 Salvia bowleyana HOM05D004768 ORTHO05D005812 2.7e-09 65.5 34 79.4
Aqoxy3G02763 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 3.5e-09 65.1 36 80.6
BcaB08g35238 Brassica carinata HOM05D004768 ORTHO05D005812 3.5e-09 65.1 35 80.0
Thhalv10002028m.g Eutrema salsugineum HOM05D004768 ORTHO05D005812 3.5e-09 65.1 35 77.1
Carub.0004s0588 Capsella rubella HOM05D004768 ORTHO05D005812 4.6e-09 64.7 35 77.1
AL4G18210 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 6.0e-09 64.3 35 77.1
AT2G26060 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 6.0e-09 64.3 35 77.1
AT4G32990 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 6.0e-09 64.3 35 71.4
Manes.09G055600 Manihot esculenta HOM05D004768 ORTHO05D005812 1.3e-08 63.2 34 76.5
HPP92_013808 Vanilla planifolia HOM05D004768 ORTHO05D005812 1.3e-08 63.2 35 77.1
AL7G18690 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 2.3e-08 62.4 35 68.6
A09p55390 Brassica napus HOM05D004768 ORTHO05D005812 2.3e-08 62.4 35 77.1
BraA09t40941Z Brassica rapa HOM05D004768 ORTHO05D005812 2.3e-08 62.4 35 77.1
BcaC07g40836 Brassica carinata HOM05D004768 ORTHO05D005812 5.1e-08 61.2 35 74.3
C08p38320 Brassica napus HOM05D004768 ORTHO05D005812 5.1e-08 61.2 35 74.3
BolC8t51408H Brassica oleracea HOM05D004768 ORTHO05D005812 5.1e-08 61.2 35 74.3
Os07g0252000 Oryza sativa ssp. japonica HOM05D004768 ORTHO05D005812 6.7e-08 60.8 36 77.8
Zm00001eb304430 Zea mays HOM05D004768 ORTHO05D005812 4.3e-07 58.2 34 76.5
Mapoly0001s0287 Marchantia polymorpha HOM05D004768 ORTHO05D005812 7.4e-07 57.4 37 64.9
DCAR_020747 Daucus carota HOM05D004768 ORTHO05D005812 1.6e-06 56.2 36 72.2
Aa31LG5G9700 Aethionema arabicum HOM05D004768 ORTHO05D005812 4.8e-06 54.7 45 60.0


User provided reference genes

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